>>> py3-h5py: Building community/py3-h5py 3.1.0-r1 (using abuild 3.9.0_rc2-r1) started Tue, 26 Oct 2021 09:09:49 +0000 >>> py3-h5py: Checking sanity of /home/buildozer/aports/community/py3-h5py/APKBUILD... >>> py3-h5py: Analyzing dependencies... >>> py3-h5py: Installing for build: build-base python3 cython hdf5-dev liblzf-dev py3-numpy-dev py3-pkgconfig py3-setuptools python3-dev py3-pytest-mpi py3-pytest (1/43) Installing libffi (3.4.2-r1) (2/43) Installing gdbm (1.20-r2) (3/43) Installing mpdecimal (2.5.1-r1) (4/43) Installing readline (8.1.1-r0) (5/43) Installing sqlite-libs (3.36.0-r0) (6/43) Installing python3 (3.9.7-r3) (7/43) Installing cython (0.29.23-r0) (8/43) Installing zlib-dev (1.2.11-r3) (9/43) Installing libquadmath (10.3.1_git20210921-r1) (10/43) Installing libgfortran (10.3.1_git20210921-r1) (11/43) Installing hdf5 (1.12.1-r1) (12/43) Installing hdf5-fortran (1.12.1-r1) (13/43) Installing hdf5-dev (1.12.1-r1) (14/43) Installing liblzf (3.6-r0) (15/43) Installing liblzf-dev (3.6-r0) (16/43) Installing openblas (0.3.18-r0) (17/43) Installing py3-numpy (1.21.1-r0) (18/43) Installing py3-numpy-dev (1.21.1-r0) (19/43) Installing py3-pkgconfig (1.5.5-r0) (20/43) Installing py3-ordered-set (4.0.2-r2) (21/43) Installing py3-appdirs (1.4.4-r2) (22/43) Installing py3-parsing (2.4.7-r2) (23/43) Installing py3-six (1.16.0-r0) (24/43) Installing py3-packaging (20.9-r1) (25/43) Installing py3-setuptools (52.0.0-r4) (26/43) Installing python3-dev (3.9.7-r3) (27/43) Installing libevent (2.1.12-r4) (28/43) Installing eudev-libs (3.2.10-r1) (29/43) Installing libxml2 (2.9.12-r1) (30/43) Installing hwloc (2.2.0-r0) (31/43) Installing openmpi (4.0.5-r0) (32/43) Installing py3-mpi4py (3.0.3-r1) (33/43) Installing py3-pytest-mpi (0.5-r1) (34/43) Installing py3-atomicwrites (1.4.0-r1) (35/43) Installing py3-attrs (21.2.0-r0) (36/43) Installing py3-more-itertools (8.10.0-r0) (37/43) Installing py3-iniconfig (1.1.1-r1) (38/43) Installing py3-pluggy (0.13.1-r4) (39/43) Installing py3-py (1.10.0-r1) (40/43) Installing py3-wcwidth (0.2.5-r1) (41/43) Installing py3-toml (0.10.2-r2) (42/43) Installing py3-pytest (6.2.5-r0) (43/43) Installing .makedepends-py3-h5py (20211026.090958) Executing busybox-1.34.1-r2.trigger OK: 903 MiB in 142 packages >>> py3-h5py: Cleaning up srcdir >>> py3-h5py: Cleaning up pkgdir >>> py3-h5py: Fetching https://distfiles.alpinelinux.org/distfiles/v3.15/h5py-3.1.0.tar.gz >>> py3-h5py: Fetching https://distfiles.alpinelinux.org/distfiles/v3.15/h5py-3.1.0.tar.gz >>> py3-h5py: Checking sha512sums... h5py-3.1.0.tar.gz: OK >>> py3-h5py: Unpacking /var/cache/distfiles/v3.15/h5py-3.1.0.tar.gz... running build running build_py creating build creating build/lib.linux-x86_64-3.9 creating build/lib.linux-x86_64-3.9/h5py copying h5py/ipy_completer.py -> build/lib.linux-x86_64-3.9/h5py copying h5py/__init__.py -> build/lib.linux-x86_64-3.9/h5py copying h5py/version.py -> build/lib.linux-x86_64-3.9/h5py copying h5py/h5py_warnings.py -> build/lib.linux-x86_64-3.9/h5py creating build/lib.linux-x86_64-3.9/h5py/_hl copying h5py/_hl/base.py -> build/lib.linux-x86_64-3.9/h5py/_hl copying h5py/_hl/vds.py -> build/lib.linux-x86_64-3.9/h5py/_hl copying h5py/_hl/group.py -> build/lib.linux-x86_64-3.9/h5py/_hl copying h5py/_hl/selections2.py -> build/lib.linux-x86_64-3.9/h5py/_hl copying h5py/_hl/__init__.py -> build/lib.linux-x86_64-3.9/h5py/_hl copying h5py/_hl/files.py -> build/lib.linux-x86_64-3.9/h5py/_hl copying h5py/_hl/datatype.py -> build/lib.linux-x86_64-3.9/h5py/_hl copying h5py/_hl/dims.py -> build/lib.linux-x86_64-3.9/h5py/_hl copying h5py/_hl/attrs.py -> build/lib.linux-x86_64-3.9/h5py/_hl copying h5py/_hl/dataset.py -> build/lib.linux-x86_64-3.9/h5py/_hl copying h5py/_hl/selections.py -> build/lib.linux-x86_64-3.9/h5py/_hl copying h5py/_hl/compat.py -> build/lib.linux-x86_64-3.9/h5py/_hl copying h5py/_hl/filters.py -> build/lib.linux-x86_64-3.9/h5py/_hl creating build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_file2.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_attrs.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_h5f.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/common.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_datatype.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_big_endian_file.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_dims_dimensionproxy.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_h5pl.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_attribute_create.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_attrs_data.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_dataset.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_selections.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_dtype.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_h5t.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_group.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_file.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_file_image.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_dimension_scales.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_h5p.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/__init__.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_dataset_swmr.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_objects.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_filters.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_errors.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_completions.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_base.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_dataset_getitem.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_slicing.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_h5.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/conftest.py -> build/lib.linux-x86_64-3.9/h5py/tests copying h5py/tests/test_h5d_direct_chunk.py -> build/lib.linux-x86_64-3.9/h5py/tests creating build/lib.linux-x86_64-3.9/h5py/tests/data_files copying h5py/tests/data_files/__init__.py -> build/lib.linux-x86_64-3.9/h5py/tests/data_files creating build/lib.linux-x86_64-3.9/h5py/tests/test_vds copying h5py/tests/test_vds/test_highlevel_vds.py -> build/lib.linux-x86_64-3.9/h5py/tests/test_vds copying h5py/tests/test_vds/__init__.py -> build/lib.linux-x86_64-3.9/h5py/tests/test_vds copying h5py/tests/test_vds/test_virtual_source.py -> build/lib.linux-x86_64-3.9/h5py/tests/test_vds copying h5py/tests/test_vds/test_lowlevel_vds.py -> build/lib.linux-x86_64-3.9/h5py/tests/test_vds copying h5py/tests/data_files/vlen_string_dset.h5 -> build/lib.linux-x86_64-3.9/h5py/tests/data_files copying h5py/tests/data_files/vlen_string_dset_utc.h5 -> build/lib.linux-x86_64-3.9/h5py/tests/data_files copying h5py/tests/data_files/vlen_string_s390x.h5 -> build/lib.linux-x86_64-3.9/h5py/tests/data_files running build_ext warning: h5py/h5pl.pyx:65:14: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables warning: h5py/h5pl.pyx:66:14: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables warning: h5py/h5pl.pyx:81:14: cpdef variables will not be supported in Cython 3; currently they are no different from cdef variables Loading library to get version: libhdf5.so ******************************************************************************** Summary of the h5py configuration HDF5 include dirs: [] HDF5 library dirs: [] HDF5 Version: (1, 12, 1) MPI Enabled: False Rebuild Required: True ******************************************************************************** Executing api_gen rebuild of defs Executing cythonize() [ 1/24] Cythonizing /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_conv.pyx [ 2/24] Cythonizing /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_errors.pyx [ 3/24] Cythonizing /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_objects.pyx [ 4/24] Cythonizing /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_proxy.pyx [ 5/24] Cythonizing /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_selector.pyx [ 6/24] Cythonizing /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/defs.pyx [ 7/24] Cythonizing /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5.pyx [ 8/24] Cythonizing /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5a.pyx [ 9/24] Cythonizing /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5ac.pyx [10/24] Cythonizing /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5d.pyx [11/24] Cythonizing /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5ds.pyx [12/24] Cythonizing /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5f.pyx [13/24] Cythonizing /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5fd.pyx [14/24] Cythonizing /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5g.pyx [15/24] Cythonizing /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5i.pyx [16/24] Cythonizing /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5l.pyx [17/24] Cythonizing /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5o.pyx [18/24] Cythonizing /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5p.pyx [19/24] Cythonizing /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5pl.pyx [20/24] Cythonizing /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5r.pyx [21/24] Cythonizing /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5s.pyx [22/24] Cythonizing /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5t.pyx [23/24] Cythonizing /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5z.pyx [24/24] Cythonizing /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/utils.pyx building 'h5py.defs' extension creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/home creating build/temp.linux-x86_64-3.9/home/buildozer creating build/temp.linux-x86_64-3.9/home/buildozer/aports creating build/temp.linux-x86_64-3.9/home/buildozer/aports/community creating build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py creating build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src creating build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0 creating build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/defs.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/defs.o /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/defs.c: In function '__pyx_f_4h5py_4defs_H5Pget_driver_info': /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/defs.c:26862:13: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 26862 | __pyx_v_r = H5Pget_driver_info(__pyx_v_plist_id); | ^ gcc -shared -fno-semantic-interposition -fno-semantic-interposition -Os -fomit-frame-pointer -Os -fomit-frame-pointer build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/defs.o -L/usr/lib -lhdf5 -lhdf5_hl -llzf -o build/lib.linux-x86_64-3.9/h5py/defs.cpython-39-x86_64-linux-musl.so building 'h5py._errors' extension gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_errors.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_errors.o /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_errors.c: In function '__pyx_f_4h5py_7_errors_walk_cb': /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_errors.c:1869:13: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1869 | __pyx_t_3 = (__pyx_v_desc[0]).desc; | ^ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_errors.c: In function '__pyx_f_4h5py_7_errors_set_exception': /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_errors.c:1986:64: warning: passing argument 3 of 'H5Ewalk2' from incompatible pointer type [-Wincompatible-pointer-types] 1986 | __pyx_t_1 = ((H5Ewalk(((hid_t)H5E_DEFAULT), H5E_WALK_UPWARD, __pyx_f_4h5py_7_errors_walk_cb, (&__pyx_v_err)) < 0) != 0); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | herr_t (*)(int, H5E_error2_t *, void *) {aka int (*)(int, H5E_error2_t *, void *)} In file included from /usr/include/hdf5.h:26, from /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/api_compat.h:27, from /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_errors.c:665: /usr/include/H5Epublic.h:471:80: note: expected 'H5E_walk2_t' {aka 'int (*)(unsigned int, const H5E_error2_t *, void *)'} but argument is of type 'herr_t (*)(int, H5E_error2_t *, void *)' {aka 'int (*)(int, H5E_error2_t *, void *)'} 471 | H5_DLL herr_t H5Ewalk2(hid_t err_stack, H5E_direction_t direction, H5E_walk2_t func, void *client_data); | ~~~~~~~~~~~~^~~~ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_errors.c:2185:13: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 2185 | __pyx_t_8 = __pyx_v_err.err.desc; | ^ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_errors.c:2236:66: warning: passing argument 3 of 'H5Ewalk2' from incompatible pointer type [-Wincompatible-pointer-types] 2236 | __pyx_t_1 = ((H5Ewalk(((hid_t)H5E_DEFAULT), H5E_WALK_DOWNWARD, __pyx_f_4h5py_7_errors_walk_cb, (&__pyx_v_err)) < 0) != 0); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | herr_t (*)(int, H5E_error2_t *, void *) {aka int (*)(int, H5E_error2_t *, void *)} In file included from /usr/include/hdf5.h:26, from /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/api_compat.h:27, from /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_errors.c:665: /usr/include/H5Epublic.h:471:80: note: expected 'H5E_walk2_t' {aka 'int (*)(unsigned int, const H5E_error2_t *, void *)'} but argument is of type 'herr_t (*)(int, H5E_error2_t *, void *)' {aka 'int (*)(int, H5E_error2_t *, void *)'} 471 | H5_DLL herr_t H5Ewalk2(hid_t err_stack, H5E_direction_t direction, H5E_walk2_t func, void *client_data); | ~~~~~~~~~~~~^~~~ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_errors.c:2268:13: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 2268 | __pyx_t_8 = __pyx_v_err.err.desc; | ^ gcc -shared -fno-semantic-interposition -fno-semantic-interposition -Os -fomit-frame-pointer -Os -fomit-frame-pointer build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_errors.o -L/usr/lib -lhdf5 -lhdf5_hl -llzf -o build/lib.linux-x86_64-3.9/h5py/_errors.cpython-39-x86_64-linux-musl.so building 'h5py._objects' extension gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_objects.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_objects.o /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_objects.c: In function '__pyx_pf_4h5py_8_objects_9FastRLock_6release': /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_objects.c:3038:38: warning: comparison of integer expressions of different signedness: 'long int' and 'long unsigned int' [-Wsign-compare] 3038 | __pyx_t_1 = ((__pyx_v_self->_owner != PyThread_get_thread_ident()) != 0); | ^~ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_objects.c: In function '__pyx_pf_4h5py_8_objects_9FastRLock_10__exit__': /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_objects.c:3256:38: warning: comparison of integer expressions of different signedness: 'long int' and 'long unsigned int' [-Wsign-compare] 3256 | __pyx_t_1 = ((__pyx_v_self->_owner != PyThread_get_thread_ident()) != 0); | ^~ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_objects.c: In function '__pyx_pf_4h5py_8_objects_9FastRLock_12_is_owned': /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_objects.c:3349:59: warning: comparison of integer expressions of different signedness: 'long int' and 'long unsigned int' [-Wsign-compare] 3349 | __pyx_t_1 = __Pyx_PyBool_FromLong((__pyx_v_self->_owner == PyThread_get_thread_ident())); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 63, __pyx_L1_error) | ^~ gcc -shared -fno-semantic-interposition -fno-semantic-interposition -Os -fomit-frame-pointer -Os -fomit-frame-pointer build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_objects.o -L/usr/lib -lhdf5 -lhdf5_hl -llzf -o build/lib.linux-x86_64-3.9/h5py/_objects.cpython-39-x86_64-linux-musl.so building 'h5py._proxy' extension gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_proxy.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_proxy.o gcc -shared -fno-semantic-interposition -fno-semantic-interposition -Os -fomit-frame-pointer -Os -fomit-frame-pointer build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_proxy.o -L/usr/lib -lhdf5 -lhdf5_hl -llzf -o build/lib.linux-x86_64-3.9/h5py/_proxy.cpython-39-x86_64-linux-musl.so building 'h5py.h5fd' extension gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5fd.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5fd.o /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5fd.c: In function '__pyx_f_4h5py_4h5fd_H5FD_fileobj_read': /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5fd.c:3521:29: warning: comparison of integer expressions of different signedness: 'Py_ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 3521 | __pyx_t_6 = ((__pyx_t_9 == __pyx_v_size) != 0); | ^~ gcc -shared -fno-semantic-interposition -fno-semantic-interposition -Os -fomit-frame-pointer -Os -fomit-frame-pointer build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5fd.o -L/usr/lib -lhdf5 -lhdf5_hl -llzf -o build/lib.linux-x86_64-3.9/h5py/h5fd.cpython-39-x86_64-linux-musl.so building 'h5py.h5z' extension creating build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5z.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5z.o gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf/lzf_filter.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf/lzf_filter.o gcc -shared -fno-semantic-interposition -fno-semantic-interposition -Os -fomit-frame-pointer -Os -fomit-frame-pointer build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5z.o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf/lzf_filter.o -L/usr/lib -lhdf5 -lhdf5_hl -llzf -o build/lib.linux-x86_64-3.9/h5py/h5z.cpython-39-x86_64-linux-musl.so building 'h5py.h5' extension gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5.o gcc -shared -fno-semantic-interposition -fno-semantic-interposition -Os -fomit-frame-pointer -Os -fomit-frame-pointer build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5.o -L/usr/lib -lhdf5 -lhdf5_hl -llzf -o build/lib.linux-x86_64-3.9/h5py/h5.cpython-39-x86_64-linux-musl.so building 'h5py.h5i' extension gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5i.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5i.o gcc -shared -fno-semantic-interposition -fno-semantic-interposition -Os -fomit-frame-pointer -Os -fomit-frame-pointer build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5i.o -L/usr/lib -lhdf5 -lhdf5_hl -llzf -o build/lib.linux-x86_64-3.9/h5py/h5i.cpython-39-x86_64-linux-musl.so building 'h5py.h5r' extension gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5r.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5r.o /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5r.c: In function '__pyx_pf_4h5py_3h5r_9Reference_2__nonzero__': /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5r.c:3198:33: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 3198 | for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) { | ^ gcc -shared -fno-semantic-interposition -fno-semantic-interposition -Os -fomit-frame-pointer -Os -fomit-frame-pointer build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5r.o -L/usr/lib -lhdf5 -lhdf5_hl -llzf -o build/lib.linux-x86_64-3.9/h5py/h5r.cpython-39-x86_64-linux-musl.so building 'h5py.utils' extension gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/utils.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/utils.o /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/utils.c: In function '__pyx_f_4h5py_5utils_convert_tuple': /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/utils.c:2695:27: warning: comparison of integer expressions of different signedness: 'Py_ssize_t' {aka 'long int'} and 'hsize_t' {aka 'long long unsigned int'} [-Wsign-compare] 2695 | __pyx_t_2 = ((__pyx_t_1 != __pyx_v_rank) != 0); | ^~ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/utils.c:2745:37: warning: comparison of integer expressions of different signedness: 'int' and 'hsize_t' {aka 'long long unsigned int'} [-Wsign-compare] 2745 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { | ^ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/utils.c: In function '__pyx_f_4h5py_5utils_convert_dims': /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/utils.c:2937:33: warning: comparison of integer expressions of different signedness: 'int' and 'hsize_t' {aka 'long long unsigned int'} [-Wsign-compare] 2937 | for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { | ^ gcc -shared -fno-semantic-interposition -fno-semantic-interposition -Os -fomit-frame-pointer -Os -fomit-frame-pointer build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/utils.o -L/usr/lib -lhdf5 -lhdf5_hl -llzf -o build/lib.linux-x86_64-3.9/h5py/utils.cpython-39-x86_64-linux-musl.so building 'h5py._selector' extension gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_selector.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_selector.o /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_selector.c: In function '__pyx_f_4h5py_9_selector_convert_bools': /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_selector.c:3039:33: warning: comparison of integer expressions of different signedness: 'int' and 'hsize_t' {aka 'long long unsigned int'} [-Wsign-compare] 3039 | for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { | ^ gcc -shared -fno-semantic-interposition -fno-semantic-interposition -Os -fomit-frame-pointer -Os -fomit-frame-pointer build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_selector.o -L/usr/lib -lhdf5 -lhdf5_hl -llzf -o build/lib.linux-x86_64-3.9/h5py/_selector.cpython-39-x86_64-linux-musl.so building 'h5py._conv' extension gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_conv.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_conv.o /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_conv.c: In function '__pyx_f_4h5py_5_conv_generic_converter': /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_conv.c:2673:39: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 2673 | for (__pyx_t_8 = 0; __pyx_t_8 < __pyx_t_7; __pyx_t_8+=1) { | ^ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_conv.c:2739:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 2739 | for (__pyx_t_8 = 0; __pyx_t_8 < __pyx_t_7; __pyx_t_8+=1) { | ^ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_conv.c: In function '__pyx_f_4h5py_5_conv_enum_int_converter_conv': /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_conv.c:6149:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 6149 | for (__pyx_t_8 = 0; __pyx_t_8 < __pyx_t_7; __pyx_t_8+=1) { | ^ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_conv.c:6212:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 6212 | for (__pyx_t_8 = 0; __pyx_t_8 < __pyx_t_7; __pyx_t_8+=1) { | ^ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_conv.c: In function '__pyx_f_4h5py_5_conv_vlen2ndarray': /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_conv.c:6906:39: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 6906 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { | ^ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_conv.c:6972:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 6972 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { | ^ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_conv.c: In function '__pyx_f_4h5py_5_conv_conv_vlen2ndarray': /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_conv.c:7059:38: warning: variable '__pyx_v_in_vlen0' set but not used [-Wunused-but-set-variable] 7059 | struct __pyx_t_4h5py_5_conv_vlen_t __pyx_v_in_vlen0; | ^~~~~~~~~~~~~~~~ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_conv.c: In function '__pyx_f_4h5py_5_conv_ndarray2vlen': /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_conv.c:7476:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 7476 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { | ^ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_conv.c:7701:41: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 7701 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { | ^ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_conv.c:7767:39: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 7767 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { | ^ gcc -shared -fno-semantic-interposition -fno-semantic-interposition -Os -fomit-frame-pointer -Os -fomit-frame-pointer build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/_conv.o -L/usr/lib -lhdf5 -lhdf5_hl -llzf -o build/lib.linux-x86_64-3.9/h5py/_conv.cpython-39-x86_64-linux-musl.so building 'h5py.h5t' extension gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5t.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5t.o /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5t.c: In function '__pyx_f_4h5py_3h5t__c_compound': /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5t.c:18709:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 18709 | if (((__pyx_t_12 > __pyx_t_9) != 0)) { | ^ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5t.c:18729:40: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 18729 | __pyx_t_11 = ((__pyx_v_member_offset > __pyx_cur_scope->__pyx_v_dt->elsize) != 0); | ^ gcc -shared -fno-semantic-interposition -fno-semantic-interposition -Os -fomit-frame-pointer -Os -fomit-frame-pointer build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5t.o -L/usr/lib -lhdf5 -lhdf5_hl -llzf -o build/lib.linux-x86_64-3.9/h5py/h5t.cpython-39-x86_64-linux-musl.so building 'h5py.h5s' extension gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5s.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5s.o gcc -shared -fno-semantic-interposition -fno-semantic-interposition -Os -fomit-frame-pointer -Os -fomit-frame-pointer build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5s.o -L/usr/lib -lhdf5 -lhdf5_hl -llzf -o build/lib.linux-x86_64-3.9/h5py/h5s.cpython-39-x86_64-linux-musl.so building 'h5py.h5p' extension gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5p.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5p.o /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5p.c: In function '__pyx_pf_4h5py_3h5p_8PropDCID_22set_filter': /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5p.c:9089:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 9089 | for (__pyx_t_1 = 0; __pyx_t_1 < __pyx_t_8; __pyx_t_1+=1) { | ^ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5p.c: In function '__pyx_pf_4h5py_3h5p_8PropDCID_28get_filter': /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5p.c:9465:33: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 9465 | for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) { | ^ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5p.c: In function '__pyx_pf_4h5py_3h5p_8PropDCID_32get_filter_by_id': /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5p.c:9905:35: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 9905 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { | ^ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5p.c: In function '__Pyx_PyInt_As_hbool_t': /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5p.c:36046:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 36046 | return (hbool_t) (((hbool_t)-1)*(((((hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5p.c:36064:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 36064 | return (hbool_t) (((hbool_t)-1)*(((((((hbool_t)digits[2]) << PyLong_SHIFT) | (hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5p.c:36082:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 36082 | return (hbool_t) (((hbool_t)-1)*(((((((((hbool_t)digits[3]) << PyLong_SHIFT) | (hbool_t)digits[2]) << PyLong_SHIFT) | (hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -shared -fno-semantic-interposition -fno-semantic-interposition -Os -fomit-frame-pointer -Os -fomit-frame-pointer build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5p.o -L/usr/lib -lhdf5 -lhdf5_hl -llzf -o build/lib.linux-x86_64-3.9/h5py/h5p.cpython-39-x86_64-linux-musl.so building 'h5py.h5d' extension gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5d.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5d.o gcc -shared -fno-semantic-interposition -fno-semantic-interposition -Os -fomit-frame-pointer -Os -fomit-frame-pointer build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5d.o -L/usr/lib -lhdf5 -lhdf5_hl -llzf -o build/lib.linux-x86_64-3.9/h5py/h5d.cpython-39-x86_64-linux-musl.so building 'h5py.h5a' extension gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5a.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5a.o gcc -shared -fno-semantic-interposition -fno-semantic-interposition -Os -fomit-frame-pointer -Os -fomit-frame-pointer build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5a.o -L/usr/lib -lhdf5 -lhdf5_hl -llzf -o build/lib.linux-x86_64-3.9/h5py/h5a.cpython-39-x86_64-linux-musl.so building 'h5py.h5f' extension gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5f.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5f.o gcc -shared -fno-semantic-interposition -fno-semantic-interposition -Os -fomit-frame-pointer -Os -fomit-frame-pointer build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5f.o -L/usr/lib -lhdf5 -lhdf5_hl -llzf -o build/lib.linux-x86_64-3.9/h5py/h5f.cpython-39-x86_64-linux-musl.so building 'h5py.h5g' extension gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5g.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5g.o /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5g.c: In function '__pyx_pf_4h5py_3h5g_7GroupID_22__contains__': /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5g.c:7180:37: warning: variable '__pyx_v_new_handler' set but not used [-Wunused-but-set-variable] 7180 | __pyx_t_4h5py_7_errors_err_cookie __pyx_v_new_handler; | ^~~~~~~~~~~~~~~~~~~ gcc -shared -fno-semantic-interposition -fno-semantic-interposition -Os -fomit-frame-pointer -Os -fomit-frame-pointer build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5g.o -L/usr/lib -lhdf5 -lhdf5_hl -llzf -o build/lib.linux-x86_64-3.9/h5py/h5g.cpython-39-x86_64-linux-musl.so building 'h5py.h5l' extension gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5l.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5l.o /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5l.c: In function '__pyx_pf_4h5py_3h5l_9LinkProxy_12get_val': /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5l.c:4540:107: warning: passing argument 4 of '__pyx_f_4h5py_4defs_H5Lunpack_elink_val' from incompatible pointer type [-Wincompatible-pointer-types] 4540 | __pyx_t_1 = __pyx_f_4h5py_4defs_H5Lunpack_elink_val(__pyx_v_buf, __pyx_v_buf_size, (&__pyx_v_wtf), (&__pyx_v_ext_file_name), (&__pyx_v_ext_obj_name)); if (unlikely(__pyx_t_1 == ((herr_t)((herr_t)-1L)))) __PYX_ERR(1, 187, __pyx_L5_error) | ~^~~~~~~~~~~~~~~~~~~~~~~ | | | char ** /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5l.c:4540:107: note: expected 'const char **' but argument is of type 'char **' /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5l.c:4540:133: warning: passing argument 5 of '__pyx_f_4h5py_4defs_H5Lunpack_elink_val' from incompatible pointer type [-Wincompatible-pointer-types] 4540 | __pyx_t_1 = __pyx_f_4h5py_4defs_H5Lunpack_elink_val(__pyx_v_buf, __pyx_v_buf_size, (&__pyx_v_wtf), (&__pyx_v_ext_file_name), (&__pyx_v_ext_obj_name)); if (unlikely(__pyx_t_1 == ((herr_t)((herr_t)-1L)))) __PYX_ERR(1, 187, __pyx_L5_error) | ~^~~~~~~~~~~~~~~~~~~~~~ | | | char ** /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5l.c:4540:133: note: expected 'const char **' but argument is of type 'char **' gcc -shared -fno-semantic-interposition -fno-semantic-interposition -Os -fomit-frame-pointer -Os -fomit-frame-pointer build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5l.o -L/usr/lib -lhdf5 -lhdf5_hl -llzf -o build/lib.linux-x86_64-3.9/h5py/h5l.cpython-39-x86_64-linux-musl.so building 'h5py.h5o' extension gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5o.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5o.o gcc -shared -fno-semantic-interposition -fno-semantic-interposition -Os -fomit-frame-pointer -Os -fomit-frame-pointer build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5o.o -L/usr/lib -lhdf5 -lhdf5_hl -llzf -o build/lib.linux-x86_64-3.9/h5py/h5o.cpython-39-x86_64-linux-musl.so building 'h5py.h5ds' extension gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5ds.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5ds.o gcc -shared -fno-semantic-interposition -fno-semantic-interposition -Os -fomit-frame-pointer -Os -fomit-frame-pointer build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5ds.o -L/usr/lib -lhdf5 -lhdf5_hl -llzf -o build/lib.linux-x86_64-3.9/h5py/h5ds.cpython-39-x86_64-linux-musl.so building 'h5py.h5ac' extension gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5ac.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5ac.o /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5ac.c: In function '__Pyx_PyInt_As_hbool_t': /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5ac.c:8702:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 8702 | return (hbool_t) (((hbool_t)-1)*(((((hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5ac.c:8720:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 8720 | return (hbool_t) (((hbool_t)-1)*(((((((hbool_t)digits[2]) << PyLong_SHIFT) | (hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5ac.c:8738:60: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 8738 | return (hbool_t) (((hbool_t)-1)*(((((((((hbool_t)digits[3]) << PyLong_SHIFT) | (hbool_t)digits[2]) << PyLong_SHIFT) | (hbool_t)digits[1]) << PyLong_SHIFT) | (hbool_t)digits[0]))); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -shared -fno-semantic-interposition -fno-semantic-interposition -Os -fomit-frame-pointer -Os -fomit-frame-pointer build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5ac.o -L/usr/lib -lhdf5 -lhdf5_hl -llzf -o build/lib.linux-x86_64-3.9/h5py/h5ac.cpython-39-x86_64-linux-musl.so building 'h5py.h5pl' extension gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -fomit-frame-pointer -g -fno-semantic-interposition -DTHREAD_STACK_SIZE=0x100000 -Os -fomit-frame-pointer -Os -fomit-frame-pointer -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/lzf -I/usr/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5pl.c -o build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5pl.o gcc -shared -fno-semantic-interposition -fno-semantic-interposition -Os -fomit-frame-pointer -Os -fomit-frame-pointer build/temp.linux-x86_64-3.9/home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/h5py/h5pl.o -L/usr/lib -lhdf5 -lhdf5_hl -llzf -o build/lib.linux-x86_64-3.9/h5py/h5pl.cpython-39-x86_64-linux-musl.so running test running build_py running build_ext Loading library to get version: libhdf5.so ******************************************************************************** Summary of the h5py configuration HDF5 include dirs: [] HDF5 library dirs: [] HDF5 Version: (1, 12, 1) MPI Enabled: False Rebuild Required: False ******************************************************************************** Executing cythonize() ============================= test session starts ============================== platform linux -- Python 3.9.7, pytest-6.2.5, py-1.10.0, pluggy-0.13.1 rootdir: /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0, configfile: pytest.ini plugins: mpi-0.5 collected 658 items h5py/tests/test_attribute_create.py ...... [ 0%] h5py/tests/test_attrs.py ........................ [ 4%] h5py/tests/test_attrs_data.py .................... [ 7%] h5py/tests/test_base.py ........... [ 9%] h5py/tests/test_big_endian_file.py .. [ 9%] h5py/tests/test_completions.py .. [ 9%] h5py/tests/test_dataset.py ............................................F [ 16%] ...........s............................................................ [ 27%] .............................. [ 32%] h5py/tests/test_dataset_getitem.py ..................................... [ 37%] ............................................................... [ 47%] h5py/tests/test_dataset_swmr.py sssss.......... [ 49%] h5py/tests/test_datatype.py .. [ 50%] h5py/tests/test_dimension_scales.py ....s................. [ 53%] h5py/tests/test_dims_dimensionproxy.py . [ 53%] h5py/tests/test_dtype.py ..................ssss [ 56%] h5py/tests/test_errors.py ... [ 57%] h5py/tests/test_file.py ...................ssss......................... [ 64%] ....sss.. [ 65%] h5py/tests/test_file2.py .........s........ [ 68%] h5py/tests/test_file_image.py .. [ 68%] h5py/tests/test_filters.py .s..s [ 69%] h5py/tests/test_group.py ............................................... [ 76%] ......................................... [ 83%] h5py/tests/test_h5.py ..... [ 83%] h5py/tests/test_h5d_direct_chunk.py .... [ 84%] h5py/tests/test_h5f.py ...... [ 85%] h5py/tests/test_h5p.py .......... [ 86%] h5py/tests/test_h5pl.py ...... [ 87%] h5py/tests/test_h5t.py ... [ 88%] h5py/tests/test_objects.py ... [ 88%] h5py/tests/test_selections.py ..... [ 89%] h5py/tests/test_slicing.py ...................................... [ 95%] h5py/tests/test_vds/test_highlevel_vds.py ......... [ 96%] h5py/tests/test_vds/test_lowlevel_vds.py .... [ 97%] h5py/tests/test_vds/test_virtual_source.py .................. [100%] =================================== FAILURES =================================== _________________________ TestCreateFillvalue.test_exc _________________________ self = def test_exc(self): """ Bogus fill value raises TypeError """ with self.assertRaises(ValueError): > dset = self.f.create_dataset('foo', (10,), dtype=[('a', 'i'), ('b', 'f')], fillvalue=42) h5py/tests/test_dataset.py:432: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ h5py/_hl/group.py:148: in create_dataset dsid = dataset.make_new_dset(group, shape, dtype, data, name, **kwds) h5py/_hl/dataset.py:137: in make_new_dset dset_id = h5d.create(parent.id, name, tid, sid, dcpl=dcpl) h5py/_objects.pyx:54: in h5py._objects.with_phil.wrapper ??? h5py/_objects.pyx:55: in h5py._objects.with_phil.wrapper ??? _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ > ??? E OSError: Unable to create dataset (no appropriate function for conversion path) h5py/h5d.pyx:87: OSError =============================== warnings summary =============================== build/lib.linux-x86_64-3.9/h5py/tests/test_dataset.py::TestCreateChunked::test_scalar_assignment build/lib.linux-x86_64-3.9/h5py/tests/test_dataset.py::TestCreateChunked::test_scalar_assignment build/lib.linux-x86_64-3.9/h5py/tests/test_dataset.py::TestCreateChunked::test_scalar_assignment build/lib.linux-x86_64-3.9/h5py/tests/test_dataset.py::test_get_chunk_details /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/build/lib.linux-x86_64-3.9/h5py/_hl/dataset.py:933: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here. Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations if self.chunks and (numpy.prod(self.chunks, dtype=numpy.float) >= build/lib.linux-x86_64-3.9/h5py/tests/test_dataset.py::TestCreateChunked::test_scalar_assignment build/lib.linux-x86_64-3.9/h5py/tests/test_dataset.py::TestCreateChunked::test_scalar_assignment build/lib.linux-x86_64-3.9/h5py/tests/test_dataset.py::TestCreateChunked::test_scalar_assignment build/lib.linux-x86_64-3.9/h5py/tests/test_dataset.py::test_get_chunk_details /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/build/lib.linux-x86_64-3.9/h5py/_hl/dataset.py:934: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here. Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations numpy.prod(selection.array_shape, dtype=numpy.float)): build/lib.linux-x86_64-3.9/h5py/tests/test_dataset.py::TestRegionRefs::test_scalar_dataset build/lib.linux-x86_64-3.9/h5py/tests/test_dataset.py::TestScalarCompound::test_scalar_compound build/lib.linux-x86_64-3.9/h5py/tests/test_dataset_getitem.py::TestScalarFloat::test_tuple build/lib.linux-x86_64-3.9/h5py/tests/test_dataset_getitem.py::TestScalarCompound::test_fieldnames build/lib.linux-x86_64-3.9/h5py/tests/test_dataset_getitem.py::TestScalarCompound::test_fieldnames build/lib.linux-x86_64-3.9/h5py/tests/test_dataset_getitem.py::TestScalarCompound::test_tuple build/lib.linux-x86_64-3.9/h5py/tests/test_slicing.py::TestSingleElement::test_scalar_null build/lib.linux-x86_64-3.9/h5py/tests/test_slicing.py::TestObjectIndex::test_scalar /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/build/lib.linux-x86_64-3.9/h5py/_hl/dataset.py:767: DeprecationWarning: Passing None into shape arguments as an alias for () is deprecated. arr = numpy.ndarray(selection.mshape, dtype=new_dtype) build/lib.linux-x86_64-3.9/h5py/tests/test_dtype.py::TestVlen::test_compound_vlen_bool /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/build/lib.linux-x86_64-3.9/h5py/tests/test_dtype.py:50: DeprecationWarning: `np.bool` is a deprecated alias for the builtin `bool`. To silence this warning, use `bool` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.bool_` here. Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations ('logical', np.bool)]) build/lib.linux-x86_64-3.9/h5py/tests/test_dtype.py::TestVlen::test_compound_vlen_bool /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/build/lib.linux-x86_64-3.9/h5py/tests/test_dtype.py:70: DeprecationWarning: `np.bool` is a deprecated alias for the builtin `bool`. To silence this warning, use `bool` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.bool_` here. Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations ('logical', np.bool)]) build/lib.linux-x86_64-3.9/h5py/tests/test_dtype.py::TestVlen::test_compound_vlen_bool /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/build/lib.linux-x86_64-3.9/h5py/tests/test_dtype.py:74: DeprecationWarning: `np.bool` is a deprecated alias for the builtin `bool`. To silence this warning, use `bool` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.bool_` here. Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations ('logical', np.bool), build/lib.linux-x86_64-3.9/h5py/tests/test_dtype.py::TestOffsets::test_float_round_tripping /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/build/lib.linux-x86_64-3.9/h5py/tests/test_dtype.py:288: DeprecationWarning: `np.typeDict` is a deprecated alias for `np.sctypeDict`. dtypes = set(f for f in np.typeDict.values() build/lib.linux-x86_64-3.9/h5py/tests/test_slicing.py::TestZeroLengthSlicing::test_slice_of_length_zero build/lib.linux-x86_64-3.9/h5py/tests/test_slicing.py::TestZeroLengthSlicing::test_slice_of_length_zero build/lib.linux-x86_64-3.9/h5py/tests/test_slicing.py::TestZeroLengthSlicing::test_slice_of_length_zero /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/build/lib.linux-x86_64-3.9/h5py/tests/test_slicing.py:267: DeprecationWarning: `np.int` is a deprecated alias for the builtin `int`. To silence this warning, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information. Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations dset = self.f.create_dataset('x%d'%i, data=np.zeros(shape, np.int), maxshape=(None,)*len(shape)) build/lib.linux-x86_64-3.9/h5py/tests/test_slicing.py::TestZeroLengthSlicing::test_slice_other_dimension build/lib.linux-x86_64-3.9/h5py/tests/test_slicing.py::TestZeroLengthSlicing::test_slice_other_dimension build/lib.linux-x86_64-3.9/h5py/tests/test_slicing.py::TestZeroLengthSlicing::test_slice_other_dimension /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/build/lib.linux-x86_64-3.9/h5py/tests/test_slicing.py:258: DeprecationWarning: `np.int` is a deprecated alias for the builtin `int`. To silence this warning, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information. Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations dset = self.f.create_dataset('x%d'%i, shape, dtype=np.int, maxshape=(None,)*len(shape)) build/lib.linux-x86_64-3.9/h5py/tests/test_slicing.py::TestZeroLengthSlicing::test_slice_zero_length_dimension build/lib.linux-x86_64-3.9/h5py/tests/test_slicing.py::TestZeroLengthSlicing::test_slice_zero_length_dimension build/lib.linux-x86_64-3.9/h5py/tests/test_slicing.py::TestZeroLengthSlicing::test_slice_zero_length_dimension /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/build/lib.linux-x86_64-3.9/h5py/tests/test_slicing.py:241: DeprecationWarning: `np.int` is a deprecated alias for the builtin `int`. To silence this warning, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information. Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations dset = self.f.create_dataset('x%d'%i, shape, dtype=np.int, maxshape=(None,)*len(shape)) build/lib.linux-x86_64-3.9/h5py/tests/test_vds/test_highlevel_vds.py::TestPercivalHighLevel::test_percival_high_level /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/build/lib.linux-x86_64-3.9/h5py/tests/test_vds/test_highlevel_vds.py:191: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here. Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations layout = h5.VirtualLayout(shape=(79, 200, 200), dtype=np.float) build/lib.linux-x86_64-3.9/h5py/tests/test_vds/test_highlevel_vds.py::TestPercivalHighLevel::test_percival_source_from_dataset /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/build/lib.linux-x86_64-3.9/h5py/tests/test_vds/test_highlevel_vds.py:212: DeprecationWarning: `np.float` is a deprecated alias for the builtin `float`. To silence this warning, use `float` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.float64` here. Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations layout = h5.VirtualLayout(shape=(79, 200, 200), dtype=np.float) build/lib.linux-x86_64-3.9/h5py/tests/test_vds/test_highlevel_vds.py::VDSUnlimitedTestCase::test_unlimited_axis /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/build/lib.linux-x86_64-3.9/h5py/tests/test_vds/test_highlevel_vds.py:417: DeprecationWarning: `np.int` is a deprecated alias for the builtin `int`. To silence this warning, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information. Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations self.layout = h5.VirtualLayout((10, 1), np.int, maxshape=(None, 1)) build/lib.linux-x86_64-3.9/h5py/tests/test_vds/test_highlevel_vds.py::VDSUnlimitedTestCase::test_unlimited_axis /home/buildozer/aports/community/py3-h5py/src/h5py-3.1.0/build/lib.linux-x86_64-3.9/h5py/tests/test_vds/test_highlevel_vds.py:439: DeprecationWarning: `np.int` is a deprecated alias for the builtin `int`. To silence this warning, use `int` by itself. Doing this will not modify any behavior and is safe. When replacing `np.int`, you may wish to use e.g. `np.int64` or `np.int32` to specify the precision. If you wish to review your current use, check the release note link for additional information. Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations source_dset[10:, 1] = np.zeros((10,), dtype=np.int) -- Docs: https://docs.pytest.org/en/stable/warnings.html =========================== short test summary info ============================ FAILED h5py/tests/test_dataset.py::TestCreateFillvalue::test_exc - OSError: U... =========== 1 failed, 636 passed, 21 skipped, 33 warnings in 14.41s ============ >>> ERROR: py3-h5py: check failed >>> py3-h5py: Uninstalling dependencies... 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