>>> py3-bioframe: Building community/py3-bioframe 0.7.2-r1 (using abuild 3.14.1-r0) started Wed, 23 Oct 2024 17:38:05 +0000 >>> py3-bioframe: Validating /home/buildozer/aports/community/py3-bioframe/APKBUILD... >>> py3-bioframe: Analyzing dependencies... >>> py3-bioframe: Installing for build: build-base py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools py3-gpep517 py3-hatchling py3-wheel py3-pytest-xdist (1/118) Installing libbz2 (1.0.8-r6) (2/118) Installing libffi (3.4.6-r0) (3/118) Installing gdbm (1.24-r0) (4/118) Installing xz-libs (5.6.3-r0) (5/118) Installing mpdecimal (4.0.0-r0) (6/118) Installing libpanelw (6.5_p20241006-r0) (7/118) Installing sqlite-libs (3.47.0-r0) (8/118) Installing python3 (3.12.7-r1) (9/118) Installing python3-pycache-pyc0 (3.12.7-r1) (10/118) Installing pyc (3.12.7-r1) (11/118) Installing py3-cairo-pyc (1.27.0-r0) (12/118) Installing py3-certifi (2024.8.30-r0) (13/118) Installing py3-certifi-pyc (2024.8.30-r0) (14/118) Installing libgfortran (14.2.0-r4) (15/118) Installing openblas (0.3.28-r0) (16/118) Installing py3-numpy (2.1.2-r0) (17/118) Installing py3-numpy-pyc (2.1.2-r0) (18/118) Installing py3-contourpy (1.3.0-r0) (19/118) Installing py3-contourpy-pyc (1.3.0-r0) (20/118) Installing py3-cycler (0.12.1-r1) (21/118) Installing py3-cycler-pyc (0.12.1-r1) (22/118) Installing py3-six (1.16.0-r9) (23/118) Installing py3-six-pyc (1.16.0-r9) (24/118) Installing py3-dateutil (2.9.0-r1) (25/118) Installing py3-dateutil-pyc (2.9.0-r1) (26/118) Installing py3-fonttools (4.53.1-r0) (27/118) Installing py3-fonttools-pyc (4.53.1-r0) (28/118) Installing py3-kiwisolver (1.4.5-r1) (29/118) Installing py3-kiwisolver-pyc (1.4.5-r1) (30/118) Installing py3-parsing (3.1.4-r0) (31/118) Installing py3-parsing-pyc (3.1.4-r0) (32/118) Installing py3-packaging (24.1-r0) (33/118) Installing py3-packaging-pyc (24.1-r0) (34/118) Installing libpng (1.6.44-r0) (35/118) Installing freetype (2.13.3-r0) (36/118) Installing libimagequant (4.2.2-r0) (37/118) Installing libjpeg-turbo (3.0.4-r0) (38/118) Installing lcms2 (2.16-r0) (39/118) Installing openjpeg (2.5.2-r0) (40/118) Installing libsharpyuv (1.4.0-r0) (41/118) Installing libwebp (1.4.0-r0) (42/118) Installing tiff (4.7.0-r0) (43/118) Installing libwebpdemux (1.4.0-r0) (44/118) Installing libwebpmux (1.4.0-r0) (45/118) Installing libxau (1.0.11-r4) (46/118) Installing libmd (1.1.0-r0) (47/118) Installing libbsd (0.12.2-r0) (48/118) Installing libxdmcp (1.1.5-r1) (49/118) Installing libxcb (1.16.1-r0) (50/118) Installing py3-pillow (11.0.0-r0) (51/118) Installing py3-pillow-pyc (11.0.0-r0) (52/118) Installing py3-tz (2024.2-r0) (53/118) Installing py3-tz-pyc (2024.2-r0) (54/118) Installing tzdata (2024b-r1) (55/118) Installing tcl (8.6.15-r0) (56/118) Installing libx11 (1.8.10-r0) (57/118) Installing libxrender (0.9.11-r5) (58/118) Installing fontconfig (2.15.0-r1) (59/118) Installing libxft (2.3.8-r3) (60/118) Installing tk (8.6.15-r0) (61/118) Installing python3-tkinter (3.12.7-r0) (62/118) Installing python3-tkinter-pyc (3.12.7-r0) (63/118) Installing py3-matplotlib-pyc (3.7.3-r2) (64/118) Installing python3-pyc (3.12.7-r1) (65/118) Installing libxext (1.3.6-r2) (66/118) Installing pixman (0.43.4-r1) (67/118) Installing cairo (1.18.2-r1) (68/118) Installing py3-cairo (1.27.0-r0) (69/118) Installing qhull (2020.2-r3) (70/118) Installing py3-matplotlib (3.7.3-r2) (71/118) Installing py3-attrs (24.2.0-r0) (72/118) Installing py3-attrs-pyc (24.2.0-r0) (73/118) Installing py3-tzdata (2024.2-r0) (74/118) Installing py3-tzdata-pyc (2024.2-r0) (75/118) Installing py3-pandas (2.2.3-r0) (76/118) Installing py3-pandas-pyc (2.2.3-r0) (77/118) Installing yaml (0.2.5-r2) (78/118) Installing py3-yaml (6.0.2-r0) (79/118) Installing py3-yaml-pyc (6.0.2-r0) (80/118) Installing py3-charset-normalizer (3.3.2-r1) (81/118) Installing py3-charset-normalizer-pyc (3.3.2-r1) (82/118) Installing py3-idna (3.10-r0) (83/118) Installing py3-idna-pyc (3.10-r0) (84/118) Installing py3-urllib3 (1.26.20-r0) (85/118) Installing py3-urllib3-pyc (1.26.20-r0) (86/118) Installing py3-requests (2.32.3-r0) (87/118) Installing py3-requests-pyc (2.32.3-r0) (88/118) Installing py3-typing-extensions (4.12.2-r0) (89/118) Installing py3-typing-extensions-pyc (4.12.2-r0) (90/118) Installing py3-setuptools (70.3.0-r0) (91/118) Installing py3-setuptools-pyc (70.3.0-r0) (92/118) Installing py3-installer (0.7.0-r2) (93/118) Installing py3-installer-pyc (0.7.0-r2) (94/118) Installing py3-gpep517 (16-r0) (95/118) Installing py3-gpep517-pyc (16-r0) (96/118) Installing py3-editables (0.5-r2) (97/118) Installing py3-editables-pyc (0.5-r2) (98/118) Installing py3-pathspec (0.12.1-r2) (99/118) Installing py3-pathspec-pyc (0.12.1-r2) (100/118) Installing py3-pluggy (1.5.0-r0) (101/118) Installing py3-pluggy-pyc (1.5.0-r0) (102/118) Installing py3-trove-classifiers (2024.10.14-r0) (103/118) Installing py3-trove-classifiers-pyc (2024.10.14-r0) (104/118) Installing py3-hatchling (1.25.0-r0) (105/118) Installing py3-hatchling-pyc (1.25.0-r0) (106/118) Installing py3-wheel (0.43.0-r0) (107/118) Installing py3-wheel-pyc (0.43.0-r0) (108/118) Installing py3-execnet (2.1.1-r0) (109/118) Installing py3-execnet-pyc (2.1.1-r0) (110/118) Installing py3-iniconfig (2.0.0-r1) (111/118) Installing py3-iniconfig-pyc (2.0.0-r1) (112/118) Installing py3-py (1.11.0-r4) (113/118) Installing py3-py-pyc (1.11.0-r4) (114/118) Installing py3-pytest (8.3.3-r0) (115/118) Installing py3-pytest-pyc (8.3.3-r0) (116/118) Installing py3-pytest-xdist (3.6.1-r0) (117/118) Installing py3-pytest-xdist-pyc (3.6.1-r0) (118/118) Installing .makedepends-py3-bioframe (20241023.173810) Executing busybox-1.37.0-r3.trigger OK: 444 MiB in 217 packages >>> py3-bioframe: Cleaning up srcdir >>> py3-bioframe: Cleaning up pkgdir >>> py3-bioframe: Cleaning up tmpdir >>> py3-bioframe: Fetching https://distfiles.alpinelinux.org/distfiles/edge/bioframe-0.7.2.tar.gz >>> py3-bioframe: Fetching https://distfiles.alpinelinux.org/distfiles/edge/bioframe-0.7.2.tar.gz >>> py3-bioframe: Checking sha512sums... bioframe-0.7.2.tar.gz: OK >>> py3-bioframe: Unpacking /var/cache/distfiles/bioframe-0.7.2.tar.gz... 2024-10-23 17:38:13,416 gpep517 INFO Building wheel via backend hatchling.build 2024-10-23 17:38:13,532 gpep517 INFO The backend produced .dist/bioframe-0.7.2-py2.py3-none-any.whl bioframe-0.7.2-py2.py3-none-any.whl ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 rootdir: /home/buildozer/aports/community/py3-bioframe/src/bioframe-0.7.2 configfile: pyproject.toml plugins: xdist-3.6.1 created: 32/32 workers 32 workers [68 items] .s.s....s........................................................... [100%] ======================== 65 passed, 3 skipped in 11.79s ======================== /usr/lib/python3.12/site-packages/_pytest/pathlib.py:91: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-7588b15a-afc8-444e-a3ab-da854a2597ea/popen-gw0/test_discovery_via_path_in_non0 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-7588b15a-afc8-444e-a3ab-da854a2597ea/popen-gw0/test_discovery_via_path_in_non0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:91: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-7588b15a-afc8-444e-a3ab-da854a2597ea/popen-gw0 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-7588b15a-afc8-444e-a3ab-da854a2597ea/popen-gw0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:91: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-7588b15a-afc8-444e-a3ab-da854a2597ea : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-7588b15a-afc8-444e-a3ab-da854a2597ea' warnings.warn( >>> py3-bioframe: Entering fakeroot... >>> py3-bioframe-doc*: Running split function doc... 'usr/share/doc' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-doc/usr/share/doc' >>> py3-bioframe-doc*: Preparing subpackage py3-bioframe-doc... >>> py3-bioframe-doc*: Running postcheck for py3-bioframe-doc >>> py3-bioframe-pyc*: Running split function pyc... 'usr/lib/python3.12/site-packages/bioframe/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/__pycache__' 'usr/lib/python3.12/site-packages/bioframe/io/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/io/__pycache__' 'usr/lib/python3.12/site-packages/bioframe/sandbox/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/sandbox/__pycache__' 'usr/lib/python3.12/site-packages/bioframe/core/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/core/__pycache__' >>> py3-bioframe-pyc*: Preparing subpackage py3-bioframe-pyc... >>> py3-bioframe-pyc*: Running postcheck for py3-bioframe-pyc >>> py3-bioframe*: Running postcheck for py3-bioframe >>> py3-bioframe*: Preparing package py3-bioframe... >>> py3-bioframe-doc*: Tracing dependencies... >>> py3-bioframe-doc*: Package size: 7.7 KB >>> py3-bioframe-doc*: Compressing data... >>> py3-bioframe-doc*: Create checksum... >>> py3-bioframe-doc*: Create py3-bioframe-doc-0.7.2-r1.apk >>> py3-bioframe-pyc*: Tracing dependencies... py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools python3~3.12 >>> py3-bioframe-pyc*: Package size: 254.7 KB >>> py3-bioframe-pyc*: Compressing data... >>> py3-bioframe-pyc*: Create checksum... >>> py3-bioframe-pyc*: Create py3-bioframe-pyc-0.7.2-r1.apk >>> py3-bioframe*: Tracing dependencies... py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools python3~3.12 >>> py3-bioframe*: Package size: 231.8 KB >>> py3-bioframe*: Compressing data... >>> py3-bioframe*: Create checksum... >>> py3-bioframe*: Create py3-bioframe-0.7.2-r1.apk >>> py3-bioframe: Build complete at Wed, 23 Oct 2024 17:38:26 +0000 elapsed time 0h 0m 21s >>> py3-bioframe: Cleaning up srcdir >>> py3-bioframe: Cleaning up pkgdir >>> py3-bioframe: Uninstalling dependencies... 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openjpeg (2.5.2-r0) (95/118) Purging pixman (0.43.4-r1) (96/118) Purging qhull (2020.2-r3) (97/118) Purging sqlite-libs (3.47.0-r0) (98/118) Purging tiff (4.7.0-r0) (99/118) Purging tk (8.6.15-r0) (100/118) Purging xz-libs (5.6.3-r0) (101/118) Purging yaml (0.2.5-r2) (102/118) Purging libxft (2.3.8-r3) (103/118) Purging fontconfig (2.15.0-r1) (104/118) Purging freetype (2.13.3-r0) (105/118) Purging libxrender (0.9.11-r5) (106/118) Purging libx11 (1.8.10-r0) (107/118) Purging libxcb (1.16.1-r0) (108/118) Purging libxdmcp (1.1.5-r1) (109/118) Purging libbsd (0.12.2-r0) (110/118) Purging libbz2 (1.0.8-r6) (111/118) Purging libjpeg-turbo (3.0.4-r0) (112/118) Purging libmd (1.1.0-r0) (113/118) Purging libpng (1.6.44-r0) (114/118) Purging libwebp (1.4.0-r0) (115/118) Purging libsharpyuv (1.4.0-r0) (116/118) Purging libxau (1.0.11-r4) (117/118) Purging tcl (8.6.15-r0) (118/118) Purging tzdata (2024b-r1) Executing busybox-1.37.0-r3.trigger OK: 243 MiB in 99 packages >>> py3-bioframe: Updating the community/loongarch64 repository index... >>> py3-bioframe: Signing the index...