>>> py3-biopython: Building community/py3-biopython 1.84-r0 (using abuild 3.15.0_rc3-r1) started Thu, 24 Apr 2025 07:43:49 +0000 >>> py3-biopython: Validating /home/buildozer/aports/community/py3-biopython/APKBUILD... >>> py3-biopython: Analyzing dependencies... >>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev (1/31) Installing libgfortran (14.2.0-r5) (2/31) Installing openblas (0.3.28-r0) (3/31) Installing libbz2 (1.0.8-r6) (4/31) Installing libffi (3.4.8-r0) (5/31) Installing gdbm (1.24-r0) (6/31) Installing xz-libs (5.8.1-r0) (7/31) Installing mpdecimal (4.0.0-r0) (8/31) Installing libpanelw (6.5_p20250412-r0) (9/31) Installing sqlite-libs (3.49.1-r0) (10/31) Installing python3 (3.12.10-r0) (11/31) Installing python3-pycache-pyc0 (3.12.10-r0) (12/31) Installing pyc (3.12.10-r0) (13/31) Installing py3-numpy-pyc (2.2.4-r0) (14/31) Installing python3-pyc (3.12.10-r0) (15/31) Installing py3-numpy (2.2.4-r0) (16/31) Installing py3-numpy-tests (2.2.4-r0) (17/31) Installing py3-installer (0.7.0-r2) (18/31) Installing py3-installer-pyc (0.7.0-r2) (19/31) Installing py3-gpep517 (16-r0) (20/31) Installing py3-gpep517-pyc (16-r0) (21/31) Installing py3-parsing (3.2.0-r0) (22/31) Installing py3-parsing-pyc (3.2.0-r0) (23/31) Installing py3-packaging (24.2-r0) (24/31) Installing py3-packaging-pyc (24.2-r0) (25/31) Installing py3-setuptools (77.0.3-r0) (26/31) Installing py3-setuptools-pyc (77.0.3-r0) (27/31) Installing py3-wheel (0.43.0-r0) (28/31) Installing py3-wheel-pyc (0.43.0-r0) (29/31) Installing py3-numpy-dev (2.2.4-r0) (30/31) Installing python3-dev (3.12.10-r0) (31/31) Installing .makedepends-py3-biopython (20250424.074356) Executing busybox-1.37.0-r16.trigger OK: 547 MiB in 134 packages >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Cleaning up tmpdir >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/v3.22/biopython-1.84.tar.gz Connecting to distfiles.alpinelinux.org (172.105.82.32:443) wget: server returned error: HTTP/1.1 404 Not Found >>> py3-biopython: Fetching https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.84.tar.gz Connecting to files.pythonhosted.org ([2a04:4e42:200::223]:443) Connecting to files.pythonhosted.org ([2a04:4e42:200::223]:443) saving to '/var/cache/distfiles/v3.22/biopython-1.84.tar.gz.part' biopython-1.84.tar.g 0% | | 9627 0:45:22 ETA biopython-1.84.tar.g 36% |*********** | 9216k 0:00:03 ETA biopython-1.84.tar.g 60% |******************* | 15.0M 0:00:01 ETA biopython-1.84.tar.g 97% |******************************* | 24.0M 0:00:00 ETA biopython-1.84.tar.g 100% |********************************| 24.5M 0:00:00 ETA '/var/cache/distfiles/v3.22/biopython-1.84.tar.gz.part' saved >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/v3.22/biopython-1.84.tar.gz >>> py3-biopython: Checking sha512sums... biopython-1.84.tar.gz: OK >>> py3-biopython: Unpacking /var/cache/distfiles/v3.22/biopython-1.84.tar.gz... 2025-04-24 07:44:01,157 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__ /usr/lib/python3.12/site-packages/setuptools/dist.py:760: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: Freely Distributable See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() 2025-04-24 07:44:01,178 root INFO running bdist_wheel 2025-04-24 07:44:01,191 root INFO running build 2025-04-24 07:44:01,191 root INFO running build_py 2025-04-24 07:44:01,194 root INFO creating build/lib.linux-aarch64-cpython-312/Bio 2025-04-24 07:44:01,194 root INFO copying Bio/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio 2025-04-24 07:44:01,195 root INFO copying Bio/MaxEntropy.py -> build/lib.linux-aarch64-cpython-312/Bio 2025-04-24 07:44:01,195 root INFO copying Bio/File.py -> build/lib.linux-aarch64-cpython-312/Bio 2025-04-24 07:44:01,195 root INFO copying Bio/bgzf.py -> build/lib.linux-aarch64-cpython-312/Bio 2025-04-24 07:44:01,196 root INFO copying Bio/kNN.py -> build/lib.linux-aarch64-cpython-312/Bio 2025-04-24 07:44:01,196 root INFO copying Bio/MarkovModel.py -> build/lib.linux-aarch64-cpython-312/Bio 2025-04-24 07:44:01,196 root INFO copying Bio/Seq.py -> build/lib.linux-aarch64-cpython-312/Bio 2025-04-24 07:44:01,197 root INFO copying Bio/_utils.py -> build/lib.linux-aarch64-cpython-312/Bio 2025-04-24 07:44:01,197 root INFO copying Bio/LogisticRegression.py -> build/lib.linux-aarch64-cpython-312/Bio 2025-04-24 07:44:01,197 root INFO copying Bio/SeqRecord.py -> build/lib.linux-aarch64-cpython-312/Bio 2025-04-24 07:44:01,198 root INFO copying Bio/SeqFeature.py -> build/lib.linux-aarch64-cpython-312/Bio 2025-04-24 07:44:01,198 root INFO copying Bio/NaiveBayes.py -> build/lib.linux-aarch64-cpython-312/Bio 2025-04-24 07:44:01,198 root INFO copying Bio/pairwise2.py -> build/lib.linux-aarch64-cpython-312/Bio 2025-04-24 07:44:01,199 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Affy 2025-04-24 07:44:01,199 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Affy 2025-04-24 07:44:01,199 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-aarch64-cpython-312/Bio/Affy 2025-04-24 07:44:01,200 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,200 root INFO copying Bio/Align/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,200 root INFO copying Bio/Align/emboss.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,200 root INFO copying Bio/Align/a2m.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,201 root INFO copying Bio/Align/chain.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,201 root INFO copying Bio/Align/bed.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,201 root INFO copying Bio/Align/psl.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,201 root INFO copying Bio/Align/clustal.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,202 root INFO copying Bio/Align/msf.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,202 root INFO copying Bio/Align/tabular.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,202 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,202 root INFO copying Bio/Align/phylip.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,203 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,203 root INFO copying Bio/Align/fasta.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,203 root INFO copying Bio/Align/sam.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,203 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,204 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,204 root INFO copying Bio/Align/maf.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,204 root INFO copying Bio/Align/mauve.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,204 root INFO copying Bio/Align/nexus.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,205 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,205 root INFO copying Bio/Align/hhr.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,205 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,205 root INFO copying Bio/Align/analysis.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,206 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,206 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Align/Applications 2025-04-24 07:44:01,206 root INFO copying Bio/Align/Applications/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Align/Applications 2025-04-24 07:44:01,207 root INFO copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-aarch64-cpython-312/Bio/Align/Applications 2025-04-24 07:44:01,207 root INFO copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-aarch64-cpython-312/Bio/Align/Applications 2025-04-24 07:44:01,207 root INFO copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-aarch64-cpython-312/Bio/Align/Applications 2025-04-24 07:44:01,207 root INFO copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-aarch64-cpython-312/Bio/Align/Applications 2025-04-24 07:44:01,208 root INFO copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-aarch64-cpython-312/Bio/Align/Applications 2025-04-24 07:44:01,208 root INFO copying Bio/Align/Applications/_Prank.py -> build/lib.linux-aarch64-cpython-312/Bio/Align/Applications 2025-04-24 07:44:01,208 root INFO copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-aarch64-cpython-312/Bio/Align/Applications 2025-04-24 07:44:01,208 root INFO copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-aarch64-cpython-312/Bio/Align/Applications 2025-04-24 07:44:01,208 root INFO copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-aarch64-cpython-312/Bio/Align/Applications 2025-04-24 07:44:01,209 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices 2025-04-24 07:44:01,209 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices 2025-04-24 07:44:01,209 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/AlignIO 2025-04-24 07:44:01,209 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO 2025-04-24 07:44:01,210 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO 2025-04-24 07:44:01,210 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO 2025-04-24 07:44:01,210 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO 2025-04-24 07:44:01,210 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO 2025-04-24 07:44:01,211 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO 2025-04-24 07:44:01,211 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO 2025-04-24 07:44:01,211 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO 2025-04-24 07:44:01,211 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO 2025-04-24 07:44:01,212 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO 2025-04-24 07:44:01,212 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-aarch64-cpython-312/Bio/AlignIO 2025-04-24 07:44:01,212 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Alphabet 2025-04-24 07:44:01,212 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Alphabet 2025-04-24 07:44:01,213 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Application 2025-04-24 07:44:01,213 root INFO copying Bio/Application/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Application 2025-04-24 07:44:01,213 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Blast 2025-04-24 07:44:01,213 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Blast 2025-04-24 07:44:01,214 root INFO copying Bio/Blast/_writers.py -> build/lib.linux-aarch64-cpython-312/Bio/Blast 2025-04-24 07:44:01,214 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-aarch64-cpython-312/Bio/Blast 2025-04-24 07:44:01,214 root INFO copying Bio/Blast/Applications.py -> build/lib.linux-aarch64-cpython-312/Bio/Blast 2025-04-24 07:44:01,215 root INFO copying Bio/Blast/_parser.py -> build/lib.linux-aarch64-cpython-312/Bio/Blast 2025-04-24 07:44:01,215 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-aarch64-cpython-312/Bio/Blast 2025-04-24 07:44:01,215 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/CAPS 2025-04-24 07:44:01,215 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/CAPS 2025-04-24 07:44:01,216 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Cluster 2025-04-24 07:44:01,216 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Cluster 2025-04-24 07:44:01,216 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/codonalign 2025-04-24 07:44:01,216 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/codonalign 2025-04-24 07:44:01,217 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-aarch64-cpython-312/Bio/codonalign 2025-04-24 07:44:01,217 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-aarch64-cpython-312/Bio/codonalign 2025-04-24 07:44:01,217 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Compass 2025-04-24 07:44:01,217 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Compass 2025-04-24 07:44:01,218 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Data 2025-04-24 07:44:01,218 root INFO copying Bio/Data/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Data 2025-04-24 07:44:01,218 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-aarch64-cpython-312/Bio/Data 2025-04-24 07:44:01,218 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-aarch64-cpython-312/Bio/Data 2025-04-24 07:44:01,219 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-aarch64-cpython-312/Bio/Data 2025-04-24 07:44:01,219 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Emboss 2025-04-24 07:44:01,219 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Emboss 2025-04-24 07:44:01,219 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-aarch64-cpython-312/Bio/Emboss 2025-04-24 07:44:01,220 root INFO copying Bio/Emboss/Applications.py -> build/lib.linux-aarch64-cpython-312/Bio/Emboss 2025-04-24 07:44:01,220 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-aarch64-cpython-312/Bio/Emboss 2025-04-24 07:44:01,220 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Entrez 2025-04-24 07:44:01,220 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Entrez 2025-04-24 07:44:01,221 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-aarch64-cpython-312/Bio/Entrez 2025-04-24 07:44:01,221 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/ExPASy 2025-04-24 07:44:01,221 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/ExPASy 2025-04-24 07:44:01,222 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-aarch64-cpython-312/Bio/ExPASy 2025-04-24 07:44:01,222 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-aarch64-cpython-312/Bio/ExPASy 2025-04-24 07:44:01,222 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-aarch64-cpython-312/Bio/ExPASy 2025-04-24 07:44:01,222 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-aarch64-cpython-312/Bio/ExPASy 2025-04-24 07:44:01,222 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-aarch64-cpython-312/Bio/ExPASy 2025-04-24 07:44:01,223 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/GenBank 2025-04-24 07:44:01,223 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/GenBank 2025-04-24 07:44:01,223 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-aarch64-cpython-312/Bio/GenBank 2025-04-24 07:44:01,224 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-aarch64-cpython-312/Bio/GenBank 2025-04-24 07:44:01,224 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-aarch64-cpython-312/Bio/GenBank 2025-04-24 07:44:01,224 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Geo 2025-04-24 07:44:01,224 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Geo 2025-04-24 07:44:01,225 root INFO copying Bio/Geo/Record.py -> build/lib.linux-aarch64-cpython-312/Bio/Geo 2025-04-24 07:44:01,225 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Graphics 2025-04-24 07:44:01,225 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics 2025-04-24 07:44:01,225 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics 2025-04-24 07:44:01,226 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics 2025-04-24 07:44:01,226 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics 2025-04-24 07:44:01,226 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics 2025-04-24 07:44:01,226 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics 2025-04-24 07:44:01,227 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics 2025-04-24 07:44:01,227 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 07:44:01,227 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 07:44:01,227 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 07:44:01,228 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 07:44:01,228 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 07:44:01,228 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 07:44:01,228 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 07:44:01,228 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 07:44:01,229 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 07:44:01,229 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 07:44:01,229 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 07:44:01,230 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 07:44:01,230 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram 2025-04-24 07:44:01,230 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/HMM 2025-04-24 07:44:01,230 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/HMM 2025-04-24 07:44:01,231 root INFO copying Bio/HMM/MarkovModel.py -> build/lib.linux-aarch64-cpython-312/Bio/HMM 2025-04-24 07:44:01,231 root INFO copying Bio/HMM/Utilities.py -> build/lib.linux-aarch64-cpython-312/Bio/HMM 2025-04-24 07:44:01,231 root INFO copying Bio/HMM/Trainer.py -> build/lib.linux-aarch64-cpython-312/Bio/HMM 2025-04-24 07:44:01,231 root INFO copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-aarch64-cpython-312/Bio/HMM 2025-04-24 07:44:01,232 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/KEGG 2025-04-24 07:44:01,232 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG 2025-04-24 07:44:01,232 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG 2025-04-24 07:44:01,232 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/KEGG/Compound 2025-04-24 07:44:01,233 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG/Compound 2025-04-24 07:44:01,233 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/KEGG/Enzyme 2025-04-24 07:44:01,233 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG/Enzyme 2025-04-24 07:44:01,233 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/KEGG/Gene 2025-04-24 07:44:01,234 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG/Gene 2025-04-24 07:44:01,234 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/KEGG/Map 2025-04-24 07:44:01,234 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG/Map 2025-04-24 07:44:01,234 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/PDB/mmtf 2025-04-24 07:44:01,234 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB/mmtf 2025-04-24 07:44:01,235 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB/mmtf 2025-04-24 07:44:01,235 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB/mmtf 2025-04-24 07:44:01,235 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/KEGG/KGML 2025-04-24 07:44:01,235 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG/KGML 2025-04-24 07:44:01,236 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG/KGML 2025-04-24 07:44:01,236 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-aarch64-cpython-312/Bio/KEGG/KGML 2025-04-24 07:44:01,236 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Medline 2025-04-24 07:44:01,236 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Medline 2025-04-24 07:44:01,237 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/motifs 2025-04-24 07:44:01,237 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs 2025-04-24 07:44:01,237 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs 2025-04-24 07:44:01,237 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs 2025-04-24 07:44:01,238 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs 2025-04-24 07:44:01,238 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs 2025-04-24 07:44:01,238 root INFO copying Bio/motifs/xms.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs 2025-04-24 07:44:01,238 root INFO copying Bio/motifs/meme.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs 2025-04-24 07:44:01,239 root INFO copying Bio/motifs/mast.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs 2025-04-24 07:44:01,239 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs 2025-04-24 07:44:01,239 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs 2025-04-24 07:44:01,239 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs 2025-04-24 07:44:01,240 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/motifs/applications 2025-04-24 07:44:01,240 root INFO copying Bio/motifs/applications/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs/applications 2025-04-24 07:44:01,240 root INFO copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs/applications 2025-04-24 07:44:01,240 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/motifs/jaspar 2025-04-24 07:44:01,241 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs/jaspar 2025-04-24 07:44:01,241 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-aarch64-cpython-312/Bio/motifs/jaspar 2025-04-24 07:44:01,241 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Nexus 2025-04-24 07:44:01,241 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Nexus 2025-04-24 07:44:01,241 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-aarch64-cpython-312/Bio/Nexus 2025-04-24 07:44:01,242 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-aarch64-cpython-312/Bio/Nexus 2025-04-24 07:44:01,242 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-aarch64-cpython-312/Bio/Nexus 2025-04-24 07:44:01,242 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-aarch64-cpython-312/Bio/Nexus 2025-04-24 07:44:01,243 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/NMR 2025-04-24 07:44:01,243 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/NMR 2025-04-24 07:44:01,243 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-aarch64-cpython-312/Bio/NMR 2025-04-24 07:44:01,243 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-aarch64-cpython-312/Bio/NMR 2025-04-24 07:44:01,244 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Pathway 2025-04-24 07:44:01,244 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Pathway 2025-04-24 07:44:01,244 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Pathway/Rep 2025-04-24 07:44:01,244 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Pathway/Rep 2025-04-24 07:44:01,244 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-aarch64-cpython-312/Bio/Pathway/Rep 2025-04-24 07:44:01,245 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-aarch64-cpython-312/Bio/Pathway/Rep 2025-04-24 07:44:01,245 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,246 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,246 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,246 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,246 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,247 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,247 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,247 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,247 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,248 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,248 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,248 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,248 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,249 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,249 root INFO copying Bio/PDB/binary_cif.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,249 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,250 root INFO copying Bio/PDB/PDBMLParser.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,250 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,250 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,250 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,250 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,251 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,251 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,251 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,252 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,252 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,252 root INFO copying Bio/PDB/alphafold_db.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,252 root INFO copying Bio/PDB/Model.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,253 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,253 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,253 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,253 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,253 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,254 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,254 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,254 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,255 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,255 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,255 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,255 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,255 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,256 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/phenotype 2025-04-24 07:44:01,256 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/phenotype 2025-04-24 07:44:01,256 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-aarch64-cpython-312/Bio/phenotype 2025-04-24 07:44:01,256 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-aarch64-cpython-312/Bio/phenotype 2025-04-24 07:44:01,257 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/PopGen 2025-04-24 07:44:01,257 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/PopGen 2025-04-24 07:44:01,257 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop 2025-04-24 07:44:01,257 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop 2025-04-24 07:44:01,258 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop 2025-04-24 07:44:01,258 root INFO copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop 2025-04-24 07:44:01,258 root INFO copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop 2025-04-24 07:44:01,258 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop 2025-04-24 07:44:01,259 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Restriction 2025-04-24 07:44:01,259 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Restriction 2025-04-24 07:44:01,259 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-aarch64-cpython-312/Bio/Restriction 2025-04-24 07:44:01,259 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-aarch64-cpython-312/Bio/Restriction 2025-04-24 07:44:01,260 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-aarch64-cpython-312/Bio/Restriction 2025-04-24 07:44:01,261 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SCOP 2025-04-24 07:44:01,261 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SCOP 2025-04-24 07:44:01,261 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-aarch64-cpython-312/Bio/SCOP 2025-04-24 07:44:01,262 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-aarch64-cpython-312/Bio/SCOP 2025-04-24 07:44:01,262 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-aarch64-cpython-312/Bio/SCOP 2025-04-24 07:44:01,262 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-aarch64-cpython-312/Bio/SCOP 2025-04-24 07:44:01,262 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-aarch64-cpython-312/Bio/SCOP 2025-04-24 07:44:01,263 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-aarch64-cpython-312/Bio/SCOP 2025-04-24 07:44:01,263 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SearchIO 2025-04-24 07:44:01,263 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO 2025-04-24 07:44:01,264 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO 2025-04-24 07:44:01,264 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO 2025-04-24 07:44:01,264 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO 2025-04-24 07:44:01,264 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO 2025-04-24 07:44:01,265 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model 2025-04-24 07:44:01,265 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model 2025-04-24 07:44:01,265 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model 2025-04-24 07:44:01,265 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model 2025-04-24 07:44:01,266 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model 2025-04-24 07:44:01,266 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model 2025-04-24 07:44:01,266 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlastIO 2025-04-24 07:44:01,266 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlastIO 2025-04-24 07:44:01,267 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlastIO 2025-04-24 07:44:01,267 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlastIO 2025-04-24 07:44:01,267 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HHsuiteIO 2025-04-24 07:44:01,267 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HHsuiteIO 2025-04-24 07:44:01,268 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HHsuiteIO 2025-04-24 07:44:01,268 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO 2025-04-24 07:44:01,268 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO 2025-04-24 07:44:01,268 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO 2025-04-24 07:44:01,269 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO 2025-04-24 07:44:01,269 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO 2025-04-24 07:44:01,269 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO 2025-04-24 07:44:01,269 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO 2025-04-24 07:44:01,270 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO 2025-04-24 07:44:01,270 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO 2025-04-24 07:44:01,270 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO 2025-04-24 07:44:01,270 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO 2025-04-24 07:44:01,271 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO 2025-04-24 07:44:01,271 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO 2025-04-24 07:44:01,271 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SearchIO/InterproscanIO 2025-04-24 07:44:01,271 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/InterproscanIO 2025-04-24 07:44:01,272 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-aarch64-cpython-312/Bio/SearchIO/InterproscanIO 2025-04-24 07:44:01,272 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,272 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,272 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,273 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,273 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,273 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,274 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,274 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,274 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,274 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,275 root INFO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,275 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,275 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,275 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,276 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,276 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,276 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,276 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,277 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,277 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,277 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,277 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,278 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,278 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,278 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SeqUtils 2025-04-24 07:44:01,278 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqUtils 2025-04-24 07:44:01,279 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqUtils 2025-04-24 07:44:01,279 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqUtils 2025-04-24 07:44:01,279 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqUtils 2025-04-24 07:44:01,279 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqUtils 2025-04-24 07:44:01,280 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqUtils 2025-04-24 07:44:01,280 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-aarch64-cpython-312/Bio/SeqUtils 2025-04-24 07:44:01,280 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Sequencing 2025-04-24 07:44:01,280 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Sequencing 2025-04-24 07:44:01,281 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-aarch64-cpython-312/Bio/Sequencing 2025-04-24 07:44:01,281 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-aarch64-cpython-312/Bio/Sequencing 2025-04-24 07:44:01,281 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Sequencing/Applications 2025-04-24 07:44:01,281 root INFO copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Sequencing/Applications 2025-04-24 07:44:01,282 root INFO copying Bio/Sequencing/Applications/_samtools.py -> build/lib.linux-aarch64-cpython-312/Bio/Sequencing/Applications 2025-04-24 07:44:01,282 root INFO copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-aarch64-cpython-312/Bio/Sequencing/Applications 2025-04-24 07:44:01,282 root INFO copying Bio/Sequencing/Applications/_bwa.py -> build/lib.linux-aarch64-cpython-312/Bio/Sequencing/Applications 2025-04-24 07:44:01,283 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SVDSuperimposer 2025-04-24 07:44:01,283 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SVDSuperimposer 2025-04-24 07:44:01,283 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/SwissProt 2025-04-24 07:44:01,283 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/SwissProt 2025-04-24 07:44:01,283 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-aarch64-cpython-312/Bio/SwissProt 2025-04-24 07:44:01,284 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/TogoWS 2025-04-24 07:44:01,284 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/TogoWS 2025-04-24 07:44:01,284 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Phylo 2025-04-24 07:44:01,284 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2025-04-24 07:44:01,285 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2025-04-24 07:44:01,285 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2025-04-24 07:44:01,285 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2025-04-24 07:44:01,286 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2025-04-24 07:44:01,286 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2025-04-24 07:44:01,286 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2025-04-24 07:44:01,286 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2025-04-24 07:44:01,287 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2025-04-24 07:44:01,287 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2025-04-24 07:44:01,287 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2025-04-24 07:44:01,287 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2025-04-24 07:44:01,288 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2025-04-24 07:44:01,288 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2025-04-24 07:44:01,288 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2025-04-24 07:44:01,288 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo 2025-04-24 07:44:01,289 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Phylo/Applications 2025-04-24 07:44:01,289 root INFO copying Bio/Phylo/Applications/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/Applications 2025-04-24 07:44:01,289 root INFO copying Bio/Phylo/Applications/_Phyml.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/Applications 2025-04-24 07:44:01,289 root INFO copying Bio/Phylo/Applications/_Raxml.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/Applications 2025-04-24 07:44:01,290 root INFO copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/Applications 2025-04-24 07:44:01,290 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML 2025-04-24 07:44:01,290 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML 2025-04-24 07:44:01,290 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML 2025-04-24 07:44:01,291 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML 2025-04-24 07:44:01,291 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML 2025-04-24 07:44:01,291 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML 2025-04-24 07:44:01,291 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML 2025-04-24 07:44:01,292 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML 2025-04-24 07:44:01,292 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML 2025-04-24 07:44:01,292 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML 2025-04-24 07:44:01,292 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/UniGene 2025-04-24 07:44:01,293 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/UniGene 2025-04-24 07:44:01,293 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/UniProt 2025-04-24 07:44:01,293 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-aarch64-cpython-312/Bio/UniProt 2025-04-24 07:44:01,293 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-aarch64-cpython-312/Bio/UniProt 2025-04-24 07:44:01,294 root INFO creating build/lib.linux-aarch64-cpython-312/BioSQL 2025-04-24 07:44:01,294 root INFO copying BioSQL/__init__.py -> build/lib.linux-aarch64-cpython-312/BioSQL 2025-04-24 07:44:01,294 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-aarch64-cpython-312/BioSQL 2025-04-24 07:44:01,294 root INFO copying BioSQL/Loader.py -> build/lib.linux-aarch64-cpython-312/BioSQL 2025-04-24 07:44:01,294 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-aarch64-cpython-312/BioSQL 2025-04-24 07:44:01,295 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-aarch64-cpython-312/BioSQL 2025-04-24 07:44:01,295 root INFO running egg_info 2025-04-24 07:44:01,298 root INFO writing biopython.egg-info/PKG-INFO 2025-04-24 07:44:01,298 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt 2025-04-24 07:44:01,298 root INFO writing requirements to biopython.egg-info/requires.txt 2025-04-24 07:44:01,299 root INFO writing top-level names to biopython.egg-info/top_level.txt 2025-04-24 07:44:01,313 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt' 2025-04-24 07:44:01,348 root INFO reading manifest template 'MANIFEST.in' 2025-04-24 07:44:01,421 root WARNING warning: no previously-included files found matching 'Doc/_build' 2025-04-24 07:44:01,425 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' 2025-04-24 07:44:01,428 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution 2025-04-24 07:44:01,430 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution 2025-04-24 07:44:01,433 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution 2025-04-24 07:44:01,435 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution 2025-04-24 07:44:01,441 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' 2025-04-24 07:44:01,441 root INFO adding license file 'LICENSE' 2025-04-24 07:44:01,441 root INFO adding license file 'LICENSE.rst' 2025-04-24 07:44:01,477 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.DTDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.DTDs' to be distributed and are already explicitly excluding 'Bio.Entrez.DTDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.XSDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.XSDs' to be distributed and are already explicitly excluding 'Bio.Entrez.XSDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) 2025-04-24 07:44:01,506 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-aarch64-cpython-312/Bio 2025-04-24 07:44:01,507 root INFO copying Bio/py.typed -> build/lib.linux-aarch64-cpython-312/Bio 2025-04-24 07:44:01,507 root INFO copying Bio/Align/_aligncore.c -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,507 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,507 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,508 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,508 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,508 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,509 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,509 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,509 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,509 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,510 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,510 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,510 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,510 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,511 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,511 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,511 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,511 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,512 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,512 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,512 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,512 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,513 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,513 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,513 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,513 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,513 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,514 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,514 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,514 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,514 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,515 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,515 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,515 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data 2025-04-24 07:44:01,515 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-aarch64-cpython-312/Bio/Cluster 2025-04-24 07:44:01,516 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-aarch64-cpython-312/Bio/Cluster 2025-04-24 07:44:01,516 root INFO copying Bio/Cluster/clustermodule.c -> build/lib.linux-aarch64-cpython-312/Bio/Cluster 2025-04-24 07:44:01,517 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,517 root INFO copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,517 root INFO copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,517 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,518 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,518 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 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build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,538 root INFO copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,539 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,539 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,539 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,539 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,540 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,540 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 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build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,557 root INFO copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,557 root INFO copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,558 root INFO copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,558 root INFO copying Bio/Entrez/DTDs/NCBI_all.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,558 root INFO copying Bio/Entrez/DTDs/NSE.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,558 root INFO copying Bio/Entrez/DTDs/NSE.mod.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,559 root INFO copying Bio/Entrez/DTDs/OMSSA.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,559 root INFO copying 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build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,565 root INFO copying Bio/Entrez/DTDs/chars.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,565 root INFO copying Bio/Entrez/DTDs/common.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,566 root INFO copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,566 root INFO copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,566 root INFO copying Bio/Entrez/DTDs/display.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,567 root INFO copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,567 root INFO copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,567 root INFO copying 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build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,571 root INFO copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,571 root INFO copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,572 root INFO copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,572 root INFO copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,572 root INFO copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,572 root INFO copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,573 root INFO copying Bio/Entrez/DTDs/isobox.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,573 root INFO copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,573 root INFO copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,573 root INFO copying Bio/Entrez/DTDs/isodia.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,574 root INFO copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,574 root INFO copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,574 root INFO copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,574 root INFO copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,575 root INFO copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,575 root INFO copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,575 root INFO copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,575 root INFO copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,576 root INFO copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,576 root INFO copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,576 root INFO copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,576 root INFO copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,577 root INFO copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,577 root INFO copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,577 root INFO copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,577 root INFO copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,578 root INFO copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,578 root INFO copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,578 root INFO copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,579 root INFO copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,579 root INFO copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,579 root INFO copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,579 root INFO copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,580 root INFO copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,580 root INFO copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,580 root INFO copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,581 root INFO copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,581 root INFO copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,581 root INFO copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,581 root INFO copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,582 root INFO copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,582 root INFO copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,582 root INFO copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,582 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,583 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,583 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,583 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,583 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,584 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,584 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,584 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,584 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,585 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,585 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,585 root INFO copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,585 root INFO copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,586 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,586 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,586 root INFO copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,586 root INFO copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,587 root INFO copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,587 root INFO copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,587 root INFO copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,587 root INFO copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,588 root INFO copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,588 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,588 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,588 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,589 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,589 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,589 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,589 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,590 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,590 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,590 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,590 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,591 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,591 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,591 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,591 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,592 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,592 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs 2025-04-24 07:44:01,592 root INFO creating build/lib.linux-aarch64-cpython-312/Bio/Entrez/XSDs 2025-04-24 07:44:01,592 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/XSDs 2025-04-24 07:44:01,593 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/XSDs 2025-04-24 07:44:01,593 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-aarch64-cpython-312/Bio/Entrez/XSDs 2025-04-24 07:44:01,593 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-aarch64-cpython-312/Bio/motifs 2025-04-24 07:44:01,593 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-aarch64-cpython-312/Bio/Nexus 2025-04-24 07:44:01,594 root INFO copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,594 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,594 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:01,594 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:01,595 root INFO copying BioSQL/py.typed -> build/lib.linux-aarch64-cpython-312/BioSQL 2025-04-24 07:44:01,601 root INFO running build_ext 2025-04-24 07:44:01,603 root INFO building 'Bio.Align._codonaligner' extension 2025-04-24 07:44:01,603 root INFO creating build/temp.linux-aarch64-cpython-312/Bio/Align 2025-04-24 07:44:01,604 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_codonaligner.c -o build/temp.linux-aarch64-cpython-312/Bio/Align/_codonaligner.o 2025-04-24 07:44:02,087 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-aarch64-cpython-312/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-aarch64-cpython-312/Bio/Align/_codonaligner.cpython-312-aarch64-linux-musl.so 2025-04-24 07:44:02,097 root INFO building 'Bio.Align._pairwisealigner' extension 2025-04-24 07:44:02,098 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-aarch64-cpython-312/Bio/Align/_pairwisealigner.o 2025-04-24 07:44:07,020 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-aarch64-cpython-312/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-aarch64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-aarch64-linux-musl.so 2025-04-24 07:44:07,031 root INFO building 'Bio.Align._aligncore' extension 2025-04-24 07:44:07,031 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_aligncore.c -o build/temp.linux-aarch64-cpython-312/Bio/Align/_aligncore.o 2025-04-24 07:44:07,257 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-aarch64-cpython-312/Bio/Align/_aligncore.o -L/usr/lib -o build/lib.linux-aarch64-cpython-312/Bio/Align/_aligncore.cpython-312-aarch64-linux-musl.so 2025-04-24 07:44:07,267 root INFO building 'Bio.cpairwise2' extension 2025-04-24 07:44:07,267 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.linux-aarch64-cpython-312/Bio/cpairwise2module.o Bio/cpairwise2module.c: In function '_get_match_score': Bio/cpairwise2module.c:60:5: warning: 'PyEval_CallObjectWithKeywords' is deprecated [-Wdeprecated-declarations] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist))) | ^~ In file included from /usr/include/python3.12/Python.h:95, from Bio/cpairwise2module.c:16: /usr/include/python3.12/ceval.h:27:43: note: declared here 27 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-04-24 07:44:07,563 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-aarch64-cpython-312/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-aarch64-cpython-312/Bio/cpairwise2.cpython-312-aarch64-linux-musl.so 2025-04-24 07:44:07,574 root INFO building 'Bio.Nexus.cnexus' extension 2025-04-24 07:44:07,574 root INFO creating build/temp.linux-aarch64-cpython-312/Bio/Nexus 2025-04-24 07:44:07,574 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.linux-aarch64-cpython-312/Bio/Nexus/cnexus.o 2025-04-24 07:44:07,696 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-aarch64-cpython-312/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-aarch64-cpython-312/Bio/Nexus/cnexus.cpython-312-aarch64-linux-musl.so 2025-04-24 07:44:07,706 root INFO building 'Bio.motifs._pwm' extension 2025-04-24 07:44:07,706 root INFO creating build/temp.linux-aarch64-cpython-312/Bio/motifs 2025-04-24 07:44:07,706 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.linux-aarch64-cpython-312/Bio/motifs/_pwm.o 2025-04-24 07:44:07,858 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-aarch64-cpython-312/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-aarch64-cpython-312/Bio/motifs/_pwm.cpython-312-aarch64-linux-musl.so 2025-04-24 07:44:07,868 root INFO building 'Bio.Cluster._cluster' extension 2025-04-24 07:44:07,869 root INFO creating build/temp.linux-aarch64-cpython-312/Bio/Cluster 2025-04-24 07:44:07,869 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.linux-aarch64-cpython-312/Bio/Cluster/cluster.o 2025-04-24 07:44:09,841 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.linux-aarch64-cpython-312/Bio/Cluster/clustermodule.o 2025-04-24 07:44:10,516 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-aarch64-cpython-312/Bio/Cluster/cluster.o build/temp.linux-aarch64-cpython-312/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-aarch64-cpython-312/Bio/Cluster/_cluster.cpython-312-aarch64-linux-musl.so 2025-04-24 07:44:10,527 root INFO building 'Bio.PDB.ccealign' extension 2025-04-24 07:44:10,527 root INFO creating build/temp.linux-aarch64-cpython-312/Bio/PDB 2025-04-24 07:44:10,528 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-aarch64-cpython-312/Bio/PDB/ccealignmodule.o 2025-04-24 07:44:10,792 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-aarch64-cpython-312/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-aarch64-cpython-312/Bio/PDB/ccealign.cpython-312-aarch64-linux-musl.so 2025-04-24 07:44:10,802 root INFO building 'Bio.PDB.kdtrees' extension 2025-04-24 07:44:10,802 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.linux-aarch64-cpython-312/Bio/PDB/kdtrees.o 2025-04-24 07:44:11,201 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-aarch64-cpython-312/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-aarch64-cpython-312/Bio/PDB/kdtrees.cpython-312-aarch64-linux-musl.so 2025-04-24 07:44:11,211 root INFO building 'Bio.PDB._bcif_helper' extension 2025-04-24 07:44:11,212 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-aarch64-cpython-312/Bio/PDB/bcifhelpermodule.o 2025-04-24 07:44:11,361 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-aarch64-cpython-312/Bio/PDB/bcifhelpermodule.o -L/usr/lib -o build/lib.linux-aarch64-cpython-312/Bio/PDB/_bcif_helper.cpython-312-aarch64-linux-musl.so 2025-04-24 07:44:11,371 root INFO building 'Bio.SeqIO._twoBitIO' extension 2025-04-24 07:44:11,371 root INFO creating build/temp.linux-aarch64-cpython-312/Bio/SeqIO 2025-04-24 07:44:11,371 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-aarch64-cpython-312/Bio/SeqIO/_twoBitIO.o 2025-04-24 07:44:11,552 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-aarch64-cpython-312/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-aarch64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-musl.so 2025-04-24 07:44:11,567 root INFO installing to build/bdist.linux-aarch64/wheel 2025-04-24 07:44:11,567 root INFO running install 2025-04-24 07:44:11,577 root INFO running install_lib 2025-04-24 07:44:11,580 root INFO creating build/bdist.linux-aarch64/wheel 2025-04-24 07:44:11,580 root INFO creating build/bdist.linux-aarch64/wheel/BioSQL 2025-04-24 07:44:11,580 root INFO copying build/lib.linux-aarch64-cpython-312/BioSQL/__init__.py -> build/bdist.linux-aarch64/wheel/./BioSQL 2025-04-24 07:44:11,580 root INFO copying build/lib.linux-aarch64-cpython-312/BioSQL/BioSeqDatabase.py -> build/bdist.linux-aarch64/wheel/./BioSQL 2025-04-24 07:44:11,581 root INFO copying build/lib.linux-aarch64-cpython-312/BioSQL/py.typed -> build/bdist.linux-aarch64/wheel/./BioSQL 2025-04-24 07:44:11,581 root INFO copying build/lib.linux-aarch64-cpython-312/BioSQL/Loader.py -> build/bdist.linux-aarch64/wheel/./BioSQL 2025-04-24 07:44:11,581 root INFO copying build/lib.linux-aarch64-cpython-312/BioSQL/BioSeq.py -> build/bdist.linux-aarch64/wheel/./BioSQL 2025-04-24 07:44:11,581 root INFO copying build/lib.linux-aarch64-cpython-312/BioSQL/DBUtils.py -> build/bdist.linux-aarch64/wheel/./BioSQL 2025-04-24 07:44:11,581 root INFO creating build/bdist.linux-aarch64/wheel/Bio 2025-04-24 07:44:11,582 root INFO creating build/bdist.linux-aarch64/wheel/Bio/HMM 2025-04-24 07:44:11,582 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/HMM/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/HMM 2025-04-24 07:44:11,582 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/HMM/MarkovModel.py -> build/bdist.linux-aarch64/wheel/./Bio/HMM 2025-04-24 07:44:11,582 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/HMM/Utilities.py -> build/bdist.linux-aarch64/wheel/./Bio/HMM 2025-04-24 07:44:11,582 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/HMM/Trainer.py -> build/bdist.linux-aarch64/wheel/./Bio/HMM 2025-04-24 07:44:11,582 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/HMM/DynamicProgramming.py -> build/bdist.linux-aarch64/wheel/./Bio/HMM 2025-04-24 07:44:11,582 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio 2025-04-24 07:44:11,583 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Phylo 2025-04-24 07:44:11,583 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2025-04-24 07:44:11,583 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2025-04-24 07:44:11,583 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2025-04-24 07:44:11,584 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Phylo/Applications 2025-04-24 07:44:11,584 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/Applications/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo/Applications 2025-04-24 07:44:11,584 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/Applications/_Phyml.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo/Applications 2025-04-24 07:44:11,584 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/Applications/_Raxml.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo/Applications 2025-04-24 07:44:11,584 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/Applications/_Fasttree.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo/Applications 2025-04-24 07:44:11,584 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/Newick.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2025-04-24 07:44:11,584 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/Consensus.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2025-04-24 07:44:11,585 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/NeXML.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2025-04-24 07:44:11,585 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2025-04-24 07:44:11,585 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/BaseTree.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2025-04-24 07:44:11,585 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/_utils.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2025-04-24 07:44:11,585 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/_io.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2025-04-24 07:44:11,585 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/NewickIO.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2025-04-24 07:44:11,586 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/CDAOIO.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2025-04-24 07:44:11,586 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2025-04-24 07:44:11,586 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/CDAO.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2025-04-24 07:44:11,586 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Phylo/PAML 2025-04-24 07:44:11,586 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo/PAML 2025-04-24 07:44:11,586 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo/PAML 2025-04-24 07:44:11,587 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo/PAML 2025-04-24 07:44:11,587 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo/PAML 2025-04-24 07:44:11,587 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo/PAML 2025-04-24 07:44:11,587 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo/PAML 2025-04-24 07:44:11,587 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo/PAML 2025-04-24 07:44:11,587 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo/PAML 2025-04-24 07:44:11,588 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo/PAML 2025-04-24 07:44:11,588 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/PhyloXML.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2025-04-24 07:44:11,588 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Phylo/NexusIO.py -> build/bdist.linux-aarch64/wheel/./Bio/Phylo 2025-04-24 07:44:11,588 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/MaxEntropy.py -> build/bdist.linux-aarch64/wheel/./Bio 2025-04-24 07:44:11,588 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Restriction 2025-04-24 07:44:11,588 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Restriction/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Restriction 2025-04-24 07:44:11,589 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Restriction/PrintFormat.py -> build/bdist.linux-aarch64/wheel/./Bio/Restriction 2025-04-24 07:44:11,589 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-aarch64/wheel/./Bio/Restriction 2025-04-24 07:44:11,590 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Restriction/Restriction.py -> build/bdist.linux-aarch64/wheel/./Bio/Restriction 2025-04-24 07:44:11,590 root INFO creating build/bdist.linux-aarch64/wheel/Bio/AlignIO 2025-04-24 07:44:11,590 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/AlignIO 2025-04-24 07:44:11,590 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/Interfaces.py -> build/bdist.linux-aarch64/wheel/./Bio/AlignIO 2025-04-24 07:44:11,591 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-aarch64/wheel/./Bio/AlignIO 2025-04-24 07:44:11,591 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-aarch64/wheel/./Bio/AlignIO 2025-04-24 07:44:11,591 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/MsfIO.py -> build/bdist.linux-aarch64/wheel/./Bio/AlignIO 2025-04-24 07:44:11,591 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/MauveIO.py -> build/bdist.linux-aarch64/wheel/./Bio/AlignIO 2025-04-24 07:44:11,591 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-aarch64/wheel/./Bio/AlignIO 2025-04-24 07:44:11,591 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-aarch64/wheel/./Bio/AlignIO 2025-04-24 07:44:11,591 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/FastaIO.py -> build/bdist.linux-aarch64/wheel/./Bio/AlignIO 2025-04-24 07:44:11,592 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/MafIO.py -> build/bdist.linux-aarch64/wheel/./Bio/AlignIO 2025-04-24 07:44:11,592 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/AlignIO/NexusIO.py -> build/bdist.linux-aarch64/wheel/./Bio/AlignIO 2025-04-24 07:44:11,592 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Compass 2025-04-24 07:44:11,592 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Compass/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Compass 2025-04-24 07:44:11,592 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Nexus 2025-04-24 07:44:11,593 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Nexus/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Nexus 2025-04-24 07:44:11,593 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Nexus/StandardData.py -> build/bdist.linux-aarch64/wheel/./Bio/Nexus 2025-04-24 07:44:11,593 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Nexus/cnexus.c -> build/bdist.linux-aarch64/wheel/./Bio/Nexus 2025-04-24 07:44:11,593 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Nexus/Nexus.py -> build/bdist.linux-aarch64/wheel/./Bio/Nexus 2025-04-24 07:44:11,593 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Nexus/cnexus.cpython-312-aarch64-linux-musl.so -> build/bdist.linux-aarch64/wheel/./Bio/Nexus 2025-04-24 07:44:11,594 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Nexus/Trees.py -> build/bdist.linux-aarch64/wheel/./Bio/Nexus 2025-04-24 07:44:11,594 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Nexus/Nodes.py -> build/bdist.linux-aarch64/wheel/./Bio/Nexus 2025-04-24 07:44:11,594 root INFO creating build/bdist.linux-aarch64/wheel/Bio/codonalign 2025-04-24 07:44:11,594 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/codonalign/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/codonalign 2025-04-24 07:44:11,594 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/codonalign/codonseq.py -> build/bdist.linux-aarch64/wheel/./Bio/codonalign 2025-04-24 07:44:11,595 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/codonalign/codonalignment.py -> build/bdist.linux-aarch64/wheel/./Bio/codonalign 2025-04-24 07:44:11,595 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Cluster 2025-04-24 07:44:11,595 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Cluster/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Cluster 2025-04-24 07:44:11,595 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Cluster/cluster.h -> build/bdist.linux-aarch64/wheel/./Bio/Cluster 2025-04-24 07:44:11,595 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Cluster/clustermodule.c -> build/bdist.linux-aarch64/wheel/./Bio/Cluster 2025-04-24 07:44:11,596 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Cluster/cluster.c -> build/bdist.linux-aarch64/wheel/./Bio/Cluster 2025-04-24 07:44:11,596 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Cluster/_cluster.cpython-312-aarch64-linux-musl.so -> build/bdist.linux-aarch64/wheel/./Bio/Cluster 2025-04-24 07:44:11,596 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Graphics 2025-04-24 07:44:11,596 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics 2025-04-24 07:44:11,597 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics 2025-04-24 07:44:11,597 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/KGML_vis.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics 2025-04-24 07:44:11,597 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/Comparative.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics 2025-04-24 07:44:11,597 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics 2025-04-24 07:44:11,597 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics 2025-04-24 07:44:11,598 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Graphics/GenomeDiagram 2025-04-24 07:44:11,598 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics/GenomeDiagram 2025-04-24 07:44:11,598 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics/GenomeDiagram 2025-04-24 07:44:11,598 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics/GenomeDiagram 2025-04-24 07:44:11,598 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics/GenomeDiagram 2025-04-24 07:44:11,598 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics/GenomeDiagram 2025-04-24 07:44:11,598 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics/GenomeDiagram 2025-04-24 07:44:11,599 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics/GenomeDiagram 2025-04-24 07:44:11,599 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics/GenomeDiagram 2025-04-24 07:44:11,599 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics/GenomeDiagram 2025-04-24 07:44:11,599 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics/GenomeDiagram 2025-04-24 07:44:11,599 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics/GenomeDiagram 2025-04-24 07:44:11,600 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics/GenomeDiagram 2025-04-24 07:44:11,600 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Graphics/Distribution.py -> build/bdist.linux-aarch64/wheel/./Bio/Graphics 2025-04-24 07:44:11,600 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/File.py -> build/bdist.linux-aarch64/wheel/./Bio 2025-04-24 07:44:11,600 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Sequencing 2025-04-24 07:44:11,600 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Sequencing/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Sequencing 2025-04-24 07:44:11,601 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Sequencing/Applications 2025-04-24 07:44:11,601 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Sequencing/Applications/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Sequencing/Applications 2025-04-24 07:44:11,601 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Sequencing/Applications/_samtools.py -> build/bdist.linux-aarch64/wheel/./Bio/Sequencing/Applications 2025-04-24 07:44:11,601 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Sequencing/Applications/_Novoalign.py -> build/bdist.linux-aarch64/wheel/./Bio/Sequencing/Applications 2025-04-24 07:44:11,601 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Sequencing/Applications/_bwa.py -> build/bdist.linux-aarch64/wheel/./Bio/Sequencing/Applications 2025-04-24 07:44:11,601 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Sequencing/Ace.py -> build/bdist.linux-aarch64/wheel/./Bio/Sequencing 2025-04-24 07:44:11,602 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Sequencing/Phd.py -> build/bdist.linux-aarch64/wheel/./Bio/Sequencing 2025-04-24 07:44:11,602 root INFO creating build/bdist.linux-aarch64/wheel/Bio/KEGG 2025-04-24 07:44:11,602 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/KEGG 2025-04-24 07:44:11,602 root INFO creating build/bdist.linux-aarch64/wheel/Bio/KEGG/Gene 2025-04-24 07:44:11,602 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/KEGG/Gene 2025-04-24 07:44:11,602 root INFO creating build/bdist.linux-aarch64/wheel/Bio/KEGG/KGML 2025-04-24 07:44:11,603 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/KEGG/KGML 2025-04-24 07:44:11,603 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-aarch64/wheel/./Bio/KEGG/KGML 2025-04-24 07:44:11,603 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-aarch64/wheel/./Bio/KEGG/KGML 2025-04-24 07:44:11,603 root INFO creating build/bdist.linux-aarch64/wheel/Bio/KEGG/Map 2025-04-24 07:44:11,603 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/Map/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/KEGG/Map 2025-04-24 07:44:11,604 root INFO creating build/bdist.linux-aarch64/wheel/Bio/KEGG/Compound 2025-04-24 07:44:11,604 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/KEGG/Compound 2025-04-24 07:44:11,604 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/REST.py -> build/bdist.linux-aarch64/wheel/./Bio/KEGG 2025-04-24 07:44:11,604 root INFO creating build/bdist.linux-aarch64/wheel/Bio/KEGG/Enzyme 2025-04-24 07:44:11,604 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/KEGG/Enzyme 2025-04-24 07:44:11,604 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/cpairwise2module.c -> build/bdist.linux-aarch64/wheel/./Bio 2025-04-24 07:44:11,605 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/bgzf.py -> build/bdist.linux-aarch64/wheel/./Bio 2025-04-24 07:44:11,605 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/kNN.py -> build/bdist.linux-aarch64/wheel/./Bio 2025-04-24 07:44:11,605 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Pathway 2025-04-24 07:44:11,605 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Pathway/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Pathway 2025-04-24 07:44:11,605 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Pathway/Rep 2025-04-24 07:44:11,605 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Pathway/Rep 2025-04-24 07:44:11,606 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-aarch64/wheel/./Bio/Pathway/Rep 2025-04-24 07:44:11,606 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-aarch64/wheel/./Bio/Pathway/Rep 2025-04-24 07:44:11,606 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/MarkovModel.py -> build/bdist.linux-aarch64/wheel/./Bio 2025-04-24 07:44:11,606 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SCOP 2025-04-24 07:44:11,606 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SCOP/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SCOP 2025-04-24 07:44:11,607 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SCOP/Hie.py -> build/bdist.linux-aarch64/wheel/./Bio/SCOP 2025-04-24 07:44:11,607 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SCOP/Raf.py -> build/bdist.linux-aarch64/wheel/./Bio/SCOP 2025-04-24 07:44:11,607 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SCOP/Dom.py -> build/bdist.linux-aarch64/wheel/./Bio/SCOP 2025-04-24 07:44:11,607 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SCOP/Cla.py -> build/bdist.linux-aarch64/wheel/./Bio/SCOP 2025-04-24 07:44:11,607 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SCOP/Des.py -> build/bdist.linux-aarch64/wheel/./Bio/SCOP 2025-04-24 07:44:11,607 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SCOP/Residues.py -> build/bdist.linux-aarch64/wheel/./Bio/SCOP 2025-04-24 07:44:11,607 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Seq.py -> build/bdist.linux-aarch64/wheel/./Bio 2025-04-24 07:44:11,608 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Data 2025-04-24 07:44:11,608 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Data/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Data 2025-04-24 07:44:11,608 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Data/IUPACData.py -> build/bdist.linux-aarch64/wheel/./Bio/Data 2025-04-24 07:44:11,608 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Data/CodonTable.py -> build/bdist.linux-aarch64/wheel/./Bio/Data 2025-04-24 07:44:11,608 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Data/PDBData.py -> build/bdist.linux-aarch64/wheel/./Bio/Data 2025-04-24 07:44:11,609 root INFO creating build/bdist.linux-aarch64/wheel/Bio/TogoWS 2025-04-24 07:44:11,609 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/TogoWS/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/TogoWS 2025-04-24 07:44:11,609 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Medline 2025-04-24 07:44:11,609 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Medline/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Medline 2025-04-24 07:44:11,610 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Blast 2025-04-24 07:44:11,610 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Blast/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Blast 2025-04-24 07:44:11,610 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Blast/_writers.py -> build/bdist.linux-aarch64/wheel/./Bio/Blast 2025-04-24 07:44:11,610 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Blast/NCBIWWW.py -> build/bdist.linux-aarch64/wheel/./Bio/Blast 2025-04-24 07:44:11,610 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Blast/Applications.py -> build/bdist.linux-aarch64/wheel/./Bio/Blast 2025-04-24 07:44:11,610 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Blast/_parser.py -> build/bdist.linux-aarch64/wheel/./Bio/Blast 2025-04-24 07:44:11,611 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Blast/NCBIXML.py -> build/bdist.linux-aarch64/wheel/./Bio/Blast 2025-04-24 07:44:11,611 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/_utils.py -> build/bdist.linux-aarch64/wheel/./Bio 2025-04-24 07:44:11,611 root INFO creating build/bdist.linux-aarch64/wheel/Bio/PopGen 2025-04-24 07:44:11,611 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PopGen/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/PopGen 2025-04-24 07:44:11,611 root INFO creating build/bdist.linux-aarch64/wheel/Bio/PopGen/GenePop 2025-04-24 07:44:11,612 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/PopGen/GenePop 2025-04-24 07:44:11,612 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-aarch64/wheel/./Bio/PopGen/GenePop 2025-04-24 07:44:11,612 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop/EasyController.py -> build/bdist.linux-aarch64/wheel/./Bio/PopGen/GenePop 2025-04-24 07:44:11,612 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop/Controller.py -> build/bdist.linux-aarch64/wheel/./Bio/PopGen/GenePop 2025-04-24 07:44:11,612 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-aarch64/wheel/./Bio/PopGen/GenePop 2025-04-24 07:44:11,613 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Emboss 2025-04-24 07:44:11,613 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Emboss/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Emboss 2025-04-24 07:44:11,613 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Emboss/Primer3.py -> build/bdist.linux-aarch64/wheel/./Bio/Emboss 2025-04-24 07:44:11,613 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Emboss/Applications.py -> build/bdist.linux-aarch64/wheel/./Bio/Emboss 2025-04-24 07:44:11,613 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-aarch64/wheel/./Bio/Emboss 2025-04-24 07:44:11,613 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/LogisticRegression.py -> build/bdist.linux-aarch64/wheel/./Bio 2025-04-24 07:44:11,614 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SwissProt 2025-04-24 07:44:11,614 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SwissProt/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SwissProt 2025-04-24 07:44:11,614 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SwissProt/KeyWList.py -> build/bdist.linux-aarch64/wheel/./Bio/SwissProt 2025-04-24 07:44:11,614 root INFO creating build/bdist.linux-aarch64/wheel/Bio/UniProt 2025-04-24 07:44:11,614 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/UniProt/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/UniProt 2025-04-24 07:44:11,614 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/UniProt/GOA.py -> build/bdist.linux-aarch64/wheel/./Bio/UniProt 2025-04-24 07:44:11,615 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SearchIO 2025-04-24 07:44:11,615 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO 2025-04-24 07:44:11,615 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SearchIO/HHsuiteIO 2025-04-24 07:44:11,615 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/HHsuiteIO 2025-04-24 07:44:11,615 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/HHsuiteIO 2025-04-24 07:44:11,615 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_index.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO 2025-04-24 07:44:11,616 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SearchIO/BlastIO 2025-04-24 07:44:11,616 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/BlastIO 2025-04-24 07:44:11,616 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/BlastIO 2025-04-24 07:44:11,616 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/BlastIO 2025-04-24 07:44:11,616 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SearchIO/_model 2025-04-24 07:44:11,617 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/_model 2025-04-24 07:44:11,617 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model/query.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/_model 2025-04-24 07:44:11,617 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model/hit.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/_model 2025-04-24 07:44:11,617 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/_model 2025-04-24 07:44:11,617 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_model/_base.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/_model 2025-04-24 07:44:11,617 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SearchIO/ExonerateIO 2025-04-24 07:44:11,618 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/ExonerateIO 2025-04-24 07:44:11,618 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/ExonerateIO 2025-04-24 07:44:11,618 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/ExonerateIO 2025-04-24 07:44:11,618 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/ExonerateIO 2025-04-24 07:44:11,618 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/ExonerateIO 2025-04-24 07:44:11,618 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SearchIO/HmmerIO 2025-04-24 07:44:11,619 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/HmmerIO 2025-04-24 07:44:11,619 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/HmmerIO 2025-04-24 07:44:11,619 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/HmmerIO 2025-04-24 07:44:11,619 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/HmmerIO 2025-04-24 07:44:11,619 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/HmmerIO 2025-04-24 07:44:11,619 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/HmmerIO 2025-04-24 07:44:11,620 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/_utils.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO 2025-04-24 07:44:11,620 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SearchIO/InterproscanIO 2025-04-24 07:44:11,620 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/InterproscanIO 2025-04-24 07:44:11,620 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO/InterproscanIO 2025-04-24 07:44:11,620 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/FastaIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO 2025-04-24 07:44:11,620 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SearchIO/BlatIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SearchIO 2025-04-24 07:44:11,621 root INFO creating build/bdist.linux-aarch64/wheel/Bio/CAPS 2025-04-24 07:44:11,621 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/CAPS/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/CAPS 2025-04-24 07:44:11,621 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Affy 2025-04-24 07:44:11,621 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Affy/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Affy 2025-04-24 07:44:11,621 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Affy/CelFile.py -> build/bdist.linux-aarch64/wheel/./Bio/Affy 2025-04-24 07:44:11,622 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SVDSuperimposer 2025-04-24 07:44:11,622 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SVDSuperimposer 2025-04-24 07:44:11,622 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SeqUtils 2025-04-24 07:44:11,622 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqUtils/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqUtils 2025-04-24 07:44:11,622 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqUtils 2025-04-24 07:44:11,622 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqUtils 2025-04-24 07:44:11,623 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqUtils/lcc.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqUtils 2025-04-24 07:44:11,623 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqUtils 2025-04-24 07:44:11,623 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqUtils 2025-04-24 07:44:11,623 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqUtils 2025-04-24 07:44:11,623 root INFO creating build/bdist.linux-aarch64/wheel/Bio/motifs 2025-04-24 07:44:11,624 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2025-04-24 07:44:11,624 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/transfac.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2025-04-24 07:44:11,624 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/alignace.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2025-04-24 07:44:11,624 root INFO creating build/bdist.linux-aarch64/wheel/Bio/motifs/jaspar 2025-04-24 07:44:11,624 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs/jaspar 2025-04-24 07:44:11,624 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/jaspar/db.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs/jaspar 2025-04-24 07:44:11,625 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/minimal.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2025-04-24 07:44:11,625 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/pfm.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2025-04-24 07:44:11,625 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/xms.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2025-04-24 07:44:11,625 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/meme.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2025-04-24 07:44:11,625 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/_pwm.cpython-312-aarch64-linux-musl.so -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2025-04-24 07:44:11,626 root INFO creating build/bdist.linux-aarch64/wheel/Bio/motifs/applications 2025-04-24 07:44:11,626 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/applications/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs/applications 2025-04-24 07:44:11,626 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/applications/_xxmotif.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs/applications 2025-04-24 07:44:11,626 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/mast.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2025-04-24 07:44:11,626 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/clusterbuster.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2025-04-24 07:44:11,626 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/matrix.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2025-04-24 07:44:11,627 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/_pwm.c -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2025-04-24 07:44:11,627 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/motifs/thresholds.py -> build/bdist.linux-aarch64/wheel/./Bio/motifs 2025-04-24 07:44:11,627 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqRecord.py -> build/bdist.linux-aarch64/wheel/./Bio 2025-04-24 07:44:11,627 root INFO creating build/bdist.linux-aarch64/wheel/Bio/phenotype 2025-04-24 07:44:11,627 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/phenotype/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/phenotype 2025-04-24 07:44:11,627 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/phenotype/phen_micro.py -> build/bdist.linux-aarch64/wheel/./Bio/phenotype 2025-04-24 07:44:11,628 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/phenotype/pm_fitting.py -> build/bdist.linux-aarch64/wheel/./Bio/phenotype 2025-04-24 07:44:11,628 root INFO creating build/bdist.linux-aarch64/wheel/Bio/NMR 2025-04-24 07:44:11,628 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/NMR/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/NMR 2025-04-24 07:44:11,628 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/NMR/xpktools.py -> build/bdist.linux-aarch64/wheel/./Bio/NMR 2025-04-24 07:44:11,628 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/NMR/NOEtools.py -> build/bdist.linux-aarch64/wheel/./Bio/NMR 2025-04-24 07:44:11,629 root INFO creating build/bdist.linux-aarch64/wheel/Bio/PDB 2025-04-24 07:44:11,629 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,629 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/ic_rebuild.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,629 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/MMCIFParser.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,629 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/kdtrees.cpython-312-aarch64-linux-musl.so -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,629 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/qcprot.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,630 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Entity.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,630 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/DSSP.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,630 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/mmcifio.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,630 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Dice.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,630 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/PDBIO.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,630 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/StructureAlignment.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,631 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/cealign.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,631 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/SCADIO.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,631 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/ic_data.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,631 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/PDBList.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,631 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/binary_cif.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,631 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/_bcif_helper.cpython-312-aarch64-linux-musl.so -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,632 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/NeighborSearch.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,632 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/PDBMLParser.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,632 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/vectors.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,633 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/StructureBuilder.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,633 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/SASA.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,633 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,633 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/internal_coords.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,633 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/PDBParser.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,634 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/ccealignmodule.c -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,634 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Structure.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,634 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Selection.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,634 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/kdtrees.c -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,634 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/ccealign.cpython-312-aarch64-linux-musl.so -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,634 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/PSEA.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,635 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/alphafold_db.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,635 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Model.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,635 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/PDBExceptions.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,635 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Polypeptide.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,635 root INFO creating build/bdist.linux-aarch64/wheel/Bio/PDB/mmtf 2025-04-24 07:44:11,635 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB/mmtf 2025-04-24 07:44:11,636 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB/mmtf 2025-04-24 07:44:11,636 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB/mmtf 2025-04-24 07:44:11,636 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,636 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,636 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Atom.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,636 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/NACCESS.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,637 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/ResidueDepth.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,637 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,637 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/PICIO.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,637 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Superimposer.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,637 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/FragmentMapper.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,637 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Chain.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,638 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/Residue.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,638 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/PDB/HSExposure.py -> build/bdist.linux-aarch64/wheel/./Bio/PDB 2025-04-24 07:44:11,638 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqFeature.py -> build/bdist.linux-aarch64/wheel/./Bio 2025-04-24 07:44:11,638 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Entrez 2025-04-24 07:44:11,638 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Entrez 2025-04-24 07:44:11,639 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Entrez/XSDs 2025-04-24 07:44:11,639 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/XSDs 2025-04-24 07:44:11,639 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/XSDs 2025-04-24 07:44:11,639 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/XSDs 2025-04-24 07:44:11,639 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/Parser.py -> build/bdist.linux-aarch64/wheel/./Bio/Entrez 2025-04-24 07:44:11,640 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Entrez/DTDs 2025-04-24 07:44:11,640 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,640 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,640 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,640 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,640 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,641 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,641 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,641 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,641 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,641 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,641 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,642 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,642 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,642 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,642 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,642 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,642 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,643 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,643 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,643 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,643 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,643 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,643 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,643 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,644 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,644 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,644 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,644 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,644 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,644 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,645 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,645 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,645 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,645 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,645 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,645 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,645 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,646 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,646 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,646 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,646 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,646 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,646 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,647 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,647 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,647 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,647 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,647 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,647 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,647 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,648 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,648 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,648 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,648 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,648 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,648 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,649 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,649 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,649 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,649 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,649 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,649 root INFO 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build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,650 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,651 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,651 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,651 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,651 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,651 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,651 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,652 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,652 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,652 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,652 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,652 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,653 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,653 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,653 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,653 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,653 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,654 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,654 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,654 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,654 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,654 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,654 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,654 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,655 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,655 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,655 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,655 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,655 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,655 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,655 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,656 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,656 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,656 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,656 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,656 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,656 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,657 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,657 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,657 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,657 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,657 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,657 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,657 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,658 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,658 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,658 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,658 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,658 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,658 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,659 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,659 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,659 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,659 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,659 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,660 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,660 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,660 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,660 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,660 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,661 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,661 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,661 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,661 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,661 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,661 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,661 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,662 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,662 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,662 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,662 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,662 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,663 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,663 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,663 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,663 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,663 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,663 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,664 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,664 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,664 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,664 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,664 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,665 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,665 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,665 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,665 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,665 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,665 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,666 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,666 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,666 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,666 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,666 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,666 root INFO 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root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,668 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,669 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,669 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,669 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,669 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,669 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,670 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,670 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/section.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,670 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,670 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,670 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,670 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_020114.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,671 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,671 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,671 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,671 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,671 root INFO copying 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build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,676 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,676 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,676 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,676 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,676 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,677 root INFO copying 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INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,678 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,678 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,678 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,678 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,678 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/eSearch_020511.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,679 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,679 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,679 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/articlemeta.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,679 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,679 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,679 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_140101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,680 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,680 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,680 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,680 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,680 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,680 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,681 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,681 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,681 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,681 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,681 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,682 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,682 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,682 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,682 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,682 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,682 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,683 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,683 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,683 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,683 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,683 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,683 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,683 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,684 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,684 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,684 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,684 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,684 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,684 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,685 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,685 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,685 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,685 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,685 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,685 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,686 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,686 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,686 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,686 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,686 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,686 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,686 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,687 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,687 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,687 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,687 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,687 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,687 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-aarch64/wheel/./Bio/Entrez/DTDs 2025-04-24 07:44:11,688 root INFO creating build/bdist.linux-aarch64/wheel/Bio/GenBank 2025-04-24 07:44:11,688 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/GenBank/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/GenBank 2025-04-24 07:44:11,688 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/GenBank/Record.py -> build/bdist.linux-aarch64/wheel/./Bio/GenBank 2025-04-24 07:44:11,688 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/GenBank/utils.py -> build/bdist.linux-aarch64/wheel/./Bio/GenBank 2025-04-24 07:44:11,689 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/GenBank/Scanner.py -> build/bdist.linux-aarch64/wheel/./Bio/GenBank 2025-04-24 07:44:11,689 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/py.typed -> build/bdist.linux-aarch64/wheel/./Bio 2025-04-24 07:44:11,689 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/cpairwise2.cpython-312-aarch64-linux-musl.so -> build/bdist.linux-aarch64/wheel/./Bio 2025-04-24 07:44:11,689 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/NaiveBayes.py -> build/bdist.linux-aarch64/wheel/./Bio 2025-04-24 07:44:11,690 root INFO creating build/bdist.linux-aarch64/wheel/Bio/SeqIO 2025-04-24 07:44:11,690 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,690 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-musl.so -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,690 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/QualityIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,690 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/PhdIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,691 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/SffIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,691 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/_index.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,691 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/Interfaces.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,691 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/PirIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,691 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,692 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/SwissIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,692 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,692 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/GfaIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,692 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/IgIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,692 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,692 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/AceIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,693 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/AbiIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,693 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/PdbIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,693 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,693 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,693 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,693 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,694 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/NibIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,694 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/FastaIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,694 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/GckIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,694 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/SeqIO/TabIO.py -> build/bdist.linux-aarch64/wheel/./Bio/SeqIO 2025-04-24 07:44:11,694 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Geo 2025-04-24 07:44:11,695 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Geo/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Geo 2025-04-24 07:44:11,695 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Geo/Record.py -> build/bdist.linux-aarch64/wheel/./Bio/Geo 2025-04-24 07:44:11,695 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Alphabet 2025-04-24 07:44:11,695 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Alphabet/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Alphabet 2025-04-24 07:44:11,695 root INFO creating build/bdist.linux-aarch64/wheel/Bio/UniGene 2025-04-24 07:44:11,695 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/UniGene/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/UniGene 2025-04-24 07:44:11,696 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Application 2025-04-24 07:44:11,696 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Application/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Application 2025-04-24 07:44:11,696 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Align 2025-04-24 07:44:11,696 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,697 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/emboss.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,697 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/a2m.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,697 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/chain.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,697 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Align/Applications 2025-04-24 07:44:11,697 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/Applications/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Align/Applications 2025-04-24 07:44:11,697 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/Applications/_Clustalw.py -> build/bdist.linux-aarch64/wheel/./Bio/Align/Applications 2025-04-24 07:44:11,698 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/Applications/_TCoffee.py -> build/bdist.linux-aarch64/wheel/./Bio/Align/Applications 2025-04-24 07:44:11,698 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/Applications/_Mafft.py -> build/bdist.linux-aarch64/wheel/./Bio/Align/Applications 2025-04-24 07:44:11,698 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/Applications/_Muscle.py -> build/bdist.linux-aarch64/wheel/./Bio/Align/Applications 2025-04-24 07:44:11,698 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/Applications/_Probcons.py -> build/bdist.linux-aarch64/wheel/./Bio/Align/Applications 2025-04-24 07:44:11,698 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/Applications/_Prank.py -> build/bdist.linux-aarch64/wheel/./Bio/Align/Applications 2025-04-24 07:44:11,698 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/Applications/_MSAProbs.py -> build/bdist.linux-aarch64/wheel/./Bio/Align/Applications 2025-04-24 07:44:11,699 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/Applications/_ClustalOmega.py -> build/bdist.linux-aarch64/wheel/./Bio/Align/Applications 2025-04-24 07:44:11,699 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/Applications/_Dialign.py -> build/bdist.linux-aarch64/wheel/./Bio/Align/Applications 2025-04-24 07:44:11,699 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/bed.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,699 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/_pairwisealigner.c -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,699 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/psl.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,700 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/clustal.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,700 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/msf.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,700 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/tabular.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,700 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/bigpsl.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,700 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/_codonaligner.c -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,701 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/phylip.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,701 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/exonerate.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,701 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-aarch64-linux-musl.so -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,701 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/fasta.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,702 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/sam.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,702 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Align/substitution_matrices 2025-04-24 07:44:11,702 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices 2025-04-24 07:44:11,702 root INFO creating build/bdist.linux-aarch64/wheel/Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,702 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,703 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,703 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,703 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,703 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,703 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,703 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,703 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,703 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,704 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,704 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,704 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,704 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,704 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,704 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,704 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,704 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,705 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,705 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,705 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,705 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,705 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,705 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,705 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,706 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,706 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,706 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,706 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,706 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,706 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-aarch64/wheel/./Bio/Align/substitution_matrices/data 2025-04-24 07:44:11,706 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/AlignInfo.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,707 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/_aligncore.cpython-312-aarch64-linux-musl.so -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,707 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/stockholm.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,707 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/maf.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,707 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/mauve.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,707 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/nexus.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,708 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/bigmaf.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,708 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/_codonaligner.cpython-312-aarch64-linux-musl.so -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,708 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/hhr.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,708 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/interfaces.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,708 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/analysis.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,709 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/_aligncore.c -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,709 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/Align/bigbed.py -> build/bdist.linux-aarch64/wheel/./Bio/Align 2025-04-24 07:44:11,709 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/pairwise2.py -> build/bdist.linux-aarch64/wheel/./Bio 2025-04-24 07:44:11,709 root INFO creating build/bdist.linux-aarch64/wheel/Bio/ExPASy 2025-04-24 07:44:11,710 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/ExPASy/__init__.py -> build/bdist.linux-aarch64/wheel/./Bio/ExPASy 2025-04-24 07:44:11,710 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/ExPASy/Prosite.py -> build/bdist.linux-aarch64/wheel/./Bio/ExPASy 2025-04-24 07:44:11,710 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-aarch64/wheel/./Bio/ExPASy 2025-04-24 07:44:11,710 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/ExPASy/Prodoc.py -> build/bdist.linux-aarch64/wheel/./Bio/ExPASy 2025-04-24 07:44:11,710 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/ExPASy/Enzyme.py -> build/bdist.linux-aarch64/wheel/./Bio/ExPASy 2025-04-24 07:44:11,710 root INFO copying build/lib.linux-aarch64-cpython-312/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-aarch64/wheel/./Bio/ExPASy 2025-04-24 07:44:11,711 root INFO running install_egg_info 2025-04-24 07:44:11,715 root INFO Copying biopython.egg-info to build/bdist.linux-aarch64/wheel/./biopython-1.84-py3.12.egg-info 2025-04-24 07:44:11,715 root INFO running install_scripts 2025-04-24 07:44:11,721 root INFO creating build/bdist.linux-aarch64/wheel/biopython-1.84.dist-info/WHEEL 2025-04-24 07:44:11,721 wheel INFO creating '/home/buildozer/aports/community/py3-biopython/src/biopython-1.84/.dist/.tmp-648nlle0/biopython-1.84-cp312-cp312-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it 2025-04-24 07:44:11,722 wheel INFO adding 'Bio/File.py' 2025-04-24 07:44:11,722 wheel INFO adding 'Bio/LogisticRegression.py' 2025-04-24 07:44:11,722 wheel INFO adding 'Bio/MarkovModel.py' 2025-04-24 07:44:11,722 wheel INFO adding 'Bio/MaxEntropy.py' 2025-04-24 07:44:11,723 wheel INFO adding 'Bio/NaiveBayes.py' 2025-04-24 07:44:11,723 wheel INFO adding 'Bio/Seq.py' 2025-04-24 07:44:11,724 wheel INFO adding 'Bio/SeqFeature.py' 2025-04-24 07:44:11,724 wheel INFO adding 'Bio/SeqRecord.py' 2025-04-24 07:44:11,724 wheel INFO adding 'Bio/__init__.py' 2025-04-24 07:44:11,724 wheel INFO adding 'Bio/_utils.py' 2025-04-24 07:44:11,725 wheel INFO adding 'Bio/bgzf.py' 2025-04-24 07:44:11,725 wheel INFO adding 'Bio/cpairwise2.cpython-312-aarch64-linux-musl.so' 2025-04-24 07:44:11,725 wheel INFO adding 'Bio/cpairwise2module.c' 2025-04-24 07:44:11,726 wheel INFO adding 'Bio/kNN.py' 2025-04-24 07:44:11,726 wheel INFO adding 'Bio/pairwise2.py' 2025-04-24 07:44:11,726 wheel INFO adding 'Bio/py.typed' 2025-04-24 07:44:11,727 wheel INFO adding 'Bio/Affy/CelFile.py' 2025-04-24 07:44:11,727 wheel INFO adding 'Bio/Affy/__init__.py' 2025-04-24 07:44:11,727 wheel INFO adding 'Bio/Align/AlignInfo.py' 2025-04-24 07:44:11,728 wheel INFO adding 'Bio/Align/__init__.py' 2025-04-24 07:44:11,728 wheel INFO adding 'Bio/Align/_aligncore.c' 2025-04-24 07:44:11,728 wheel INFO adding 'Bio/Align/_aligncore.cpython-312-aarch64-linux-musl.so' 2025-04-24 07:44:11,729 wheel INFO adding 'Bio/Align/_codonaligner.c' 2025-04-24 07:44:11,729 wheel INFO adding 'Bio/Align/_codonaligner.cpython-312-aarch64-linux-musl.so' 2025-04-24 07:44:11,730 wheel INFO adding 'Bio/Align/_pairwisealigner.c' 2025-04-24 07:44:11,731 wheel INFO adding 'Bio/Align/_pairwisealigner.cpython-312-aarch64-linux-musl.so' 2025-04-24 07:44:11,731 wheel INFO adding 'Bio/Align/a2m.py' 2025-04-24 07:44:11,731 wheel INFO adding 'Bio/Align/analysis.py' 2025-04-24 07:44:11,731 wheel INFO adding 'Bio/Align/bed.py' 2025-04-24 07:44:11,732 wheel INFO adding 'Bio/Align/bigbed.py' 2025-04-24 07:44:11,732 wheel INFO adding 'Bio/Align/bigmaf.py' 2025-04-24 07:44:11,732 wheel INFO adding 'Bio/Align/bigpsl.py' 2025-04-24 07:44:11,733 wheel INFO adding 'Bio/Align/chain.py' 2025-04-24 07:44:11,733 wheel INFO adding 'Bio/Align/clustal.py' 2025-04-24 07:44:11,733 wheel INFO adding 'Bio/Align/emboss.py' 2025-04-24 07:44:11,733 wheel INFO adding 'Bio/Align/exonerate.py' 2025-04-24 07:44:11,733 wheel INFO adding 'Bio/Align/fasta.py' 2025-04-24 07:44:11,734 wheel INFO adding 'Bio/Align/hhr.py' 2025-04-24 07:44:11,734 wheel INFO adding 'Bio/Align/interfaces.py' 2025-04-24 07:44:11,734 wheel INFO adding 'Bio/Align/maf.py' 2025-04-24 07:44:11,734 wheel INFO adding 'Bio/Align/mauve.py' 2025-04-24 07:44:11,734 wheel INFO adding 'Bio/Align/msf.py' 2025-04-24 07:44:11,735 wheel INFO adding 'Bio/Align/nexus.py' 2025-04-24 07:44:11,735 wheel INFO adding 'Bio/Align/phylip.py' 2025-04-24 07:44:11,735 wheel INFO adding 'Bio/Align/psl.py' 2025-04-24 07:44:11,735 wheel INFO adding 'Bio/Align/sam.py' 2025-04-24 07:44:11,736 wheel INFO adding 'Bio/Align/stockholm.py' 2025-04-24 07:44:11,736 wheel INFO adding 'Bio/Align/tabular.py' 2025-04-24 07:44:11,736 wheel INFO adding 'Bio/Align/Applications/_ClustalOmega.py' 2025-04-24 07:44:11,736 wheel INFO adding 'Bio/Align/Applications/_Clustalw.py' 2025-04-24 07:44:11,737 wheel INFO adding 'Bio/Align/Applications/_Dialign.py' 2025-04-24 07:44:11,737 wheel INFO adding 'Bio/Align/Applications/_MSAProbs.py' 2025-04-24 07:44:11,737 wheel INFO adding 'Bio/Align/Applications/_Mafft.py' 2025-04-24 07:44:11,737 wheel INFO adding 'Bio/Align/Applications/_Muscle.py' 2025-04-24 07:44:11,737 wheel INFO adding 'Bio/Align/Applications/_Prank.py' 2025-04-24 07:44:11,738 wheel INFO adding 'Bio/Align/Applications/_Probcons.py' 2025-04-24 07:44:11,738 wheel INFO adding 'Bio/Align/Applications/_TCoffee.py' 2025-04-24 07:44:11,738 wheel INFO adding 'Bio/Align/Applications/__init__.py' 2025-04-24 07:44:11,738 wheel INFO adding 'Bio/Align/substitution_matrices/__init__.py' 2025-04-24 07:44:11,738 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER22' 2025-04-24 07:44:11,738 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER6' 2025-04-24 07:44:11,739 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER74' 2025-04-24 07:44:11,739 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLASTN' 2025-04-24 07:44:11,739 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLASTP' 2025-04-24 07:44:11,739 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM45' 2025-04-24 07:44:11,739 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM50' 2025-04-24 07:44:11,739 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM62' 2025-04-24 07:44:11,740 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM80' 2025-04-24 07:44:11,740 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM90' 2025-04-24 07:44:11,740 wheel INFO adding 'Bio/Align/substitution_matrices/data/DAYHOFF' 2025-04-24 07:44:11,740 wheel INFO adding 'Bio/Align/substitution_matrices/data/FENG' 2025-04-24 07:44:11,740 wheel INFO adding 'Bio/Align/substitution_matrices/data/GENETIC' 2025-04-24 07:44:11,740 wheel INFO adding 'Bio/Align/substitution_matrices/data/GONNET1992' 2025-04-24 07:44:11,740 wheel INFO adding 'Bio/Align/substitution_matrices/data/HOXD70' 2025-04-24 07:44:11,741 wheel INFO adding 'Bio/Align/substitution_matrices/data/JOHNSON' 2025-04-24 07:44:11,741 wheel INFO adding 'Bio/Align/substitution_matrices/data/JONES' 2025-04-24 07:44:11,741 wheel INFO adding 'Bio/Align/substitution_matrices/data/LEVIN' 2025-04-24 07:44:11,741 wheel INFO adding 'Bio/Align/substitution_matrices/data/MCLACHLAN' 2025-04-24 07:44:11,741 wheel INFO adding 'Bio/Align/substitution_matrices/data/MDM78' 2025-04-24 07:44:11,741 wheel INFO adding 'Bio/Align/substitution_matrices/data/MEGABLAST' 2025-04-24 07:44:11,742 wheel INFO adding 'Bio/Align/substitution_matrices/data/NUC.4.4' 2025-04-24 07:44:11,742 wheel INFO adding 'Bio/Align/substitution_matrices/data/PAM250' 2025-04-24 07:44:11,742 wheel INFO adding 'Bio/Align/substitution_matrices/data/PAM30' 2025-04-24 07:44:11,742 wheel INFO adding 'Bio/Align/substitution_matrices/data/PAM70' 2025-04-24 07:44:11,742 wheel INFO adding 'Bio/Align/substitution_matrices/data/RAO' 2025-04-24 07:44:11,742 wheel INFO adding 'Bio/Align/substitution_matrices/data/RISLER' 2025-04-24 07:44:11,743 wheel INFO adding 'Bio/Align/substitution_matrices/data/SCHNEIDER' 2025-04-24 07:44:11,743 wheel INFO adding 'Bio/Align/substitution_matrices/data/STR' 2025-04-24 07:44:11,743 wheel INFO adding 'Bio/Align/substitution_matrices/data/TRANS' 2025-04-24 07:44:11,743 wheel INFO adding 'Bio/AlignIO/ClustalIO.py' 2025-04-24 07:44:11,743 wheel INFO adding 'Bio/AlignIO/EmbossIO.py' 2025-04-24 07:44:11,743 wheel INFO adding 'Bio/AlignIO/FastaIO.py' 2025-04-24 07:44:11,744 wheel INFO adding 'Bio/AlignIO/Interfaces.py' 2025-04-24 07:44:11,744 wheel INFO adding 'Bio/AlignIO/MafIO.py' 2025-04-24 07:44:11,744 wheel INFO adding 'Bio/AlignIO/MauveIO.py' 2025-04-24 07:44:11,744 wheel INFO adding 'Bio/AlignIO/MsfIO.py' 2025-04-24 07:44:11,745 wheel INFO adding 'Bio/AlignIO/NexusIO.py' 2025-04-24 07:44:11,745 wheel INFO adding 'Bio/AlignIO/PhylipIO.py' 2025-04-24 07:44:11,745 wheel INFO adding 'Bio/AlignIO/StockholmIO.py' 2025-04-24 07:44:11,745 wheel INFO adding 'Bio/AlignIO/__init__.py' 2025-04-24 07:44:11,745 wheel INFO adding 'Bio/Alphabet/__init__.py' 2025-04-24 07:44:11,746 wheel INFO adding 'Bio/Application/__init__.py' 2025-04-24 07:44:11,746 wheel INFO adding 'Bio/Blast/Applications.py' 2025-04-24 07:44:11,746 wheel INFO adding 'Bio/Blast/NCBIWWW.py' 2025-04-24 07:44:11,747 wheel INFO adding 'Bio/Blast/NCBIXML.py' 2025-04-24 07:44:11,747 wheel INFO adding 'Bio/Blast/__init__.py' 2025-04-24 07:44:11,747 wheel INFO adding 'Bio/Blast/_parser.py' 2025-04-24 07:44:11,748 wheel INFO adding 'Bio/Blast/_writers.py' 2025-04-24 07:44:11,748 wheel INFO adding 'Bio/CAPS/__init__.py' 2025-04-24 07:44:11,748 wheel INFO adding 'Bio/Cluster/__init__.py' 2025-04-24 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'/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/NMR/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' 'usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Geo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Geo/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__' 'usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Application/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Application/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Align/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Align/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/Applications/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__' 'usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__' >>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc... >>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc >>> py3-biopython*: Running postcheck for py3-biopython >>> py3-biopython*: Preparing package py3-biopython... >>> py3-biopython*: Stripping binaries >>> py3-biopython-pyc*: Scanning shared objects >>> py3-biopython*: Scanning shared objects >>> py3-biopython-pyc*: Tracing dependencies... py3-numpy python3 python3~3.12 >>> py3-biopython-pyc*: Package size: 6.4 MB >>> py3-biopython-pyc*: Compressing data... >>> py3-biopython-pyc*: Create checksum... >>> py3-biopython-pyc*: Create py3-biopython-pyc-1.84-r0.apk >>> py3-biopython*: Tracing dependencies... py3-numpy python3 python3~3.12 so:libc.musl-aarch64.so.1 >>> py3-biopython*: Package size: 11.5 MB >>> py3-biopython*: Compressing data... >>> py3-biopython*: Create checksum... >>> py3-biopython*: Create py3-biopython-1.84-r0.apk >>> py3-biopython: Build complete at Thu, 24 Apr 2025 07:44:15 +0000 elapsed time 0h 0m 26s >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Uninstalling dependencies... (1/31) Purging .makedepends-py3-biopython (20250424.074356) (2/31) Purging py3-gpep517-pyc (16-r0) (3/31) Purging py3-gpep517 (16-r0) (4/31) Purging py3-installer-pyc (0.7.0-r2) (5/31) Purging py3-installer (0.7.0-r2) (6/31) Purging py3-setuptools-pyc (77.0.3-r0) (7/31) Purging py3-setuptools (77.0.3-r0) (8/31) Purging py3-wheel-pyc (0.43.0-r0) (9/31) Purging py3-wheel (0.43.0-r0) (10/31) Purging py3-packaging-pyc (24.2-r0) (11/31) Purging py3-packaging (24.2-r0) (12/31) Purging py3-parsing-pyc (3.2.0-r0) (13/31) Purging py3-parsing (3.2.0-r0) (14/31) Purging py3-numpy-dev (2.2.4-r0) (15/31) Purging py3-numpy-tests (2.2.4-r0) (16/31) Purging py3-numpy-pyc (2.2.4-r0) (17/31) Purging py3-numpy (2.2.4-r0) (18/31) Purging openblas (0.3.28-r0) (19/31) Purging python3-dev (3.12.10-r0) (20/31) Purging python3-pyc (3.12.10-r0) (21/31) Purging python3-pycache-pyc0 (3.12.10-r0) (22/31) Purging pyc (3.12.10-r0) (23/31) Purging python3 (3.12.10-r0) (24/31) Purging gdbm (1.24-r0) (25/31) Purging libbz2 (1.0.8-r6) (26/31) Purging libffi (3.4.8-r0) (27/31) Purging libgfortran (14.2.0-r5) (28/31) Purging libpanelw (6.5_p20250412-r0) (29/31) Purging mpdecimal (4.0.0-r0) (30/31) Purging sqlite-libs (3.49.1-r0) (31/31) Purging xz-libs (5.8.1-r0) Executing busybox-1.37.0-r16.trigger OK: 397 MiB in 103 packages >>> py3-biopython: Updating the community/aarch64 repository index... >>> py3-biopython: Signing the index...