>>> py3-rpy2: Building community/py3-rpy2 3.5.17-r0 (using abuild 3.15.0_rc3-r3) started Wed, 14 May 2025 05:47:10 +0000 >>> py3-rpy2: Validating /home/buildozer/aports/community/py3-rpy2/APKBUILD... >>> py3-rpy2: Analyzing dependencies... >>> py3-rpy2: Installing for build: build-base py3-cffi py3-numpy py3-tz py3-tzlocal py3-jinja2 R py3-gpep517 py3-setuptools py3-wheel python3-dev R-dev libdeflate-dev py3-pytest (1/129) Installing libbz2 (1.0.8-r6) (2/129) Installing libffi (3.4.8-r0) (3/129) Installing gdbm (1.24-r0) (4/129) Installing xz-libs (5.8.1-r0) (5/129) Installing mpdecimal (4.0.0-r0) (6/129) Installing libpanelw (6.5_p20250503-r0) (7/129) Installing sqlite-libs (3.49.2-r0) (8/129) Installing python3 (3.12.10-r0) (9/129) Installing python3-pycache-pyc0 (3.12.10-r0) (10/129) Installing pyc (3.12.10-r0) (11/129) Installing py3-cparser-pyc (2.22-r1) (12/129) Installing py3-cffi-pyc (1.17.1-r1) (13/129) Installing python3-pyc (3.12.10-r0) (14/129) Installing py3-cparser (2.22-r1) (15/129) Installing py3-cffi (1.17.1-r1) (16/129) Installing libgfortran (14.2.0-r6) (17/129) Installing openblas (0.3.28-r0) (18/129) Installing py3-numpy (2.2.4-r0) (19/129) Installing py3-numpy-tests (2.2.4-r0) (20/129) Installing py3-numpy-pyc (2.2.4-r0) (21/129) Installing py3-tz (2025.2-r0) (22/129) Installing py3-tz-pyc (2025.2-r0) (23/129) Installing py3-attrs (25.3.0-r0) (24/129) Installing py3-attrs-pyc (25.3.0-r0) (25/129) Installing py3-tzdata (2025.2-r0) (26/129) Installing py3-tzdata-pyc (2025.2-r0) (27/129) Installing py3-tzlocal (5.3-r0) (28/129) Installing py3-tzlocal-pyc (5.3-r0) (29/129) Installing py3-markupsafe (3.0.2-r0) (30/129) Installing py3-markupsafe-pyc (3.0.2-r0) (31/129) Installing py3-jinja2 (3.1.6-r0) (32/129) Installing py3-jinja2-pyc (3.1.6-r0) (33/129) Installing R-mathlib (4.5.0-r0) (34/129) Installing tzdata (2025b-r0) (35/129) Installing libxau (1.0.12-r0) (36/129) Installing libmd (1.1.0-r0) (37/129) Installing libbsd (0.12.2-r0) (38/129) Installing libxdmcp (1.1.5-r1) (39/129) Installing libxcb (1.17.0-r0) (40/129) Installing libx11 (1.8.11-r0) (41/129) Installing libxext (1.3.6-r2) (42/129) Installing libice (1.1.2-r0) (43/129) Installing libuuid (2.41-r7) (44/129) Installing libsm (1.2.5-r0) (45/129) Installing libxt (1.3.1-r0) (46/129) Installing libxmu (1.2.1-r0) (47/129) Installing libxrender (0.9.12-r0) (48/129) Installing libpng (1.6.47-r0) (49/129) Installing freetype (2.13.3-r0) (50/129) Installing fontconfig (2.15.0-r3) (51/129) Installing pixman (0.46.0-r0) (52/129) Installing cairo (1.18.2-r1) (53/129) Installing libdeflate (1.23-r0) (54/129) Installing libintl (0.24.1-r0) (55/129) Installing libeconf (0.6.3-r0) (56/129) Installing libblkid (2.41-r7) (57/129) Installing libmount (2.41-r7) (58/129) Installing glib (2.84.1-r0) (59/129) Installing icu-data-en (76.1-r0) Executing icu-data-en-76.1-r0.post-install * * If you need ICU with non-English locales and legacy charset support, install * package icu-data-full. * (60/129) Installing icu-libs (76.1-r0) (61/129) Installing libjpeg-turbo (3.1.0-r0) (62/129) Installing libxft (2.3.8-r3) (63/129) Installing fribidi (1.0.16-r0) (64/129) Installing graphite2 (1.3.14-r6) (65/129) Installing harfbuzz (11.2.1-r0) (66/129) Installing pango (1.56.3-r0) (67/129) Installing tcl (8.6.16-r0) (68/129) Installing libsharpyuv (1.5.0-r0) (69/129) Installing libwebp (1.5.0-r0) (70/129) Installing tiff (4.7.0-r0) (71/129) Installing tk (8.6.16-r0) (72/129) Installing R (4.5.0-r0) Executing R-4.5.0-r0.post-install * * If you want to install R packages from CRAN that contains native extensions, * then you must also install R-dev. * * To avoid warnings about R.css when installing R extensions also install R-doc. * (73/129) Installing py3-installer (0.7.0-r2) (74/129) Installing py3-installer-pyc (0.7.0-r2) (75/129) Installing py3-gpep517 (19-r0) (76/129) Installing py3-gpep517-pyc (19-r0) (77/129) Installing py3-parsing (3.2.3-r0) (78/129) Installing py3-parsing-pyc (3.2.3-r0) (79/129) Installing py3-packaging (25.0-r0) (80/129) Installing py3-packaging-pyc (25.0-r0) (81/129) Installing py3-setuptools (80.5.0-r0) (82/129) Installing py3-setuptools-pyc (80.5.0-r0) (83/129) Installing py3-wheel (0.46.1-r0) (84/129) Installing py3-wheel-pyc (0.46.1-r0) (85/129) Installing python3-dev (3.12.10-r0) (86/129) Installing bzip2-dev (1.0.8-r6) (87/129) Installing brotli (1.1.0-r2) (88/129) Installing brotli-dev (1.1.0-r2) (89/129) Installing c-ares-dev (1.34.5-r0) (90/129) Installing libidn2-dev (2.3.7-r0) (91/129) Installing libpsl-utils (0.21.5-r3) (92/129) Installing libpsl-dev (0.21.5-r3) (93/129) Installing nghttp2-dev (1.65.0-r0) (94/129) Installing openssl-dev (3.5.0-r0) (95/129) Installing zlib-dev (1.3.1-r2) (96/129) Installing zstd (1.5.7-r0) (97/129) Installing zstd-dev (1.5.7-r0) (98/129) Installing curl-dev (8.13.0-r1) (99/129) Installing gfortran (14.2.0-r6) (100/129) Installing icu (76.1-r0) (101/129) Installing icu-dev (76.1-r0) (102/129) Installing libdeflate-dev (1.23-r0) (103/129) Installing libpng-dev (1.6.47-r0) (104/129) Installing liblapack (0.3.28-r0) (105/129) Installing liblapacke (0.3.28-r0) (106/129) Installing openblas-dev (0.3.28-r0) (107/129) Installing bsd-compat-headers (0.7.2-r6) (108/129) Installing libformw (6.5_p20250503-r0) (109/129) Installing libmenuw (6.5_p20250503-r0) (110/129) Installing libncurses++ (6.5_p20250503-r0) (111/129) Installing ncurses-dev (6.5_p20250503-r0) (112/129) Installing libedit-dev (20250104.3.1-r0) (113/129) Installing libpcre2-16 (10.43-r1) (114/129) Installing libpcre2-32 (10.43-r1) (115/129) Installing pcre2-dev (10.43-r1) (116/129) Installing libhistory (8.2.13-r0) (117/129) Installing readline-dev (8.2.13-r0) (118/129) Installing xz (5.8.1-r0) (119/129) Installing xz-dev (5.8.1-r0) (120/129) Installing R-dev (4.5.0-r0) (121/129) Installing py3-iniconfig (2.1.0-r0) (122/129) Installing py3-iniconfig-pyc (2.1.0-r0) (123/129) Installing py3-pluggy (1.5.0-r0) (124/129) Installing py3-pluggy-pyc (1.5.0-r0) (125/129) Installing py3-py (1.11.0-r4) (126/129) Installing py3-py-pyc (1.11.0-r4) (127/129) Installing py3-pytest (8.3.5-r0) (128/129) Installing py3-pytest-pyc (8.3.5-r0) (129/129) Installing .makedepends-py3-rpy2 (20250514.054719) Executing busybox-1.37.0-r17.trigger Executing glib-2.84.1-r0.trigger OK: 648 MiB in 233 packages >>> py3-rpy2: Cleaning up srcdir >>> py3-rpy2: Cleaning up pkgdir >>> py3-rpy2: Cleaning up tmpdir >>> py3-rpy2: Fetching https://distfiles.alpinelinux.org/distfiles/v3.22/py3-rpy2-3.5.17.tar.gz >>> py3-rpy2: Fetching https://distfiles.alpinelinux.org/distfiles/v3.22/py3-rpy2-3.5.17.tar.gz >>> py3-rpy2: Checking sha512sums... py3-rpy2-3.5.17.tar.gz: OK >>> py3-rpy2: Unpacking /var/cache/distfiles/v3.22/py3-rpy2-3.5.17.tar.gz... 2025-05-14 05:47:22,026 gpep517 INFO Building wheel via backend setuptools.build_meta 2025-05-14 05:47:22,044 situation INFO R home found: /usr/lib/R 2025-05-14 05:47:22,044 situation INFO cffi mode is CFFI_MODE.ANY 2025-05-14 05:47:22,045 situation INFO R exec path: /usr/lib/R/bin/R 2025-05-14 05:47:22,057 situation INFO R exec path: /usr/lib/R/bin/R 2025-05-14 05:47:22,073 root INFO creating /tmp/tmp_pw_r_it3j02nq/tmp/tmp_pw_r_it3j02nq 2025-05-14 05:47:22,073 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/R -c /tmp/tmp_pw_r_it3j02nq/test_pw_r.c -o /tmp/tmp_pw_r_it3j02nq/tmp/tmp_pw_r_it3j02nq/test_pw_r.o 2025-05-14 05:47:22,092 root INFO cc /tmp/tmp_pw_r_it3j02nq/tmp/tmp_pw_r_it3j02nq/test_pw_r.o -L/usr/lib/R/lib -lR -lpcre2-8 -ldeflate -lzstd -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n -o /tmp/tmp_pw_r_it3j02nq/test_pw_r 2025-05-14 05:47:22,123 situation INFO cffi mode is CFFI_MODE.ANY 2025-05-14 05:47:22,196 situation INFO R home found: /usr/lib/R 2025-05-14 05:47:22,196 situation INFO R exec path: /usr/lib/R/bin/R 2025-05-14 05:47:22,209 situation INFO R exec path: /usr/lib/R/bin/R 2025-05-14 05:47:22,223 situation INFO R exec path: /usr/lib/R/bin/R 2025-05-14 05:47:22,235 situation INFO R exec path: /usr/lib/R/bin/R 2025-05-14 05:47:22,329 situation INFO cffi mode is CFFI_MODE.ANY 2025-05-14 05:47:22,378 situation INFO R home found: /usr/lib/R 2025-05-14 05:47:22,379 situation INFO R exec path: /usr/lib/R/bin/R 2025-05-14 05:47:22,392 situation INFO R exec path: /usr/lib/R/bin/R 2025-05-14 05:47:22,405 situation INFO R exec path: /usr/lib/R/bin/R 2025-05-14 05:47:22,418 situation INFO R exec path: /usr/lib/R/bin/R /usr/lib/python3.12/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3.12/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3.12/site-packages/setuptools/dist.py:761: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() 2025-05-14 05:47:22,526 root INFO running bdist_wheel 2025-05-14 05:47:22,535 root INFO running build 2025-05-14 05:47:22,535 root INFO running build_py 2025-05-14 05:47:22,535 root WARNING file _rinterface_cffi_abi.py (for module _rinterface_cffi_abi) not found 2025-05-14 05:47:22,536 root INFO creating build/lib.linux-s390x-cpython-312/rpy2 2025-05-14 05:47:22,536 root INFO copying rpy2/rinterface.py -> build/lib.linux-s390x-cpython-312/rpy2 2025-05-14 05:47:22,536 root INFO copying rpy2/__init__.py -> build/lib.linux-s390x-cpython-312/rpy2 2025-05-14 05:47:22,536 root INFO copying rpy2/situation.py -> build/lib.linux-s390x-cpython-312/rpy2 2025-05-14 05:47:22,536 root INFO copying rpy2/_rinterface_cffi_build.py -> build/lib.linux-s390x-cpython-312/rpy2 2025-05-14 05:47:22,537 root INFO creating build/lib.linux-s390x-cpython-312/rpy2/rlike 2025-05-14 05:47:22,537 root INFO copying rpy2/rlike/functional.py -> build/lib.linux-s390x-cpython-312/rpy2/rlike 2025-05-14 05:47:22,537 root INFO copying rpy2/rlike/__init__.py -> build/lib.linux-s390x-cpython-312/rpy2/rlike 2025-05-14 05:47:22,537 root INFO copying rpy2/rlike/container.py -> build/lib.linux-s390x-cpython-312/rpy2/rlike 2025-05-14 05:47:22,537 root INFO copying rpy2/rlike/indexing.py -> build/lib.linux-s390x-cpython-312/rpy2/rlike 2025-05-14 05:47:22,537 root INFO creating build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib 2025-05-14 05:47:22,537 root INFO copying rpy2/rinterface_lib/_rinterface_capi.py -> build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib 2025-05-14 05:47:22,538 root INFO copying rpy2/rinterface_lib/conversion.py -> build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib 2025-05-14 05:47:22,538 root INFO copying rpy2/rinterface_lib/__init__.py -> build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib 2025-05-14 05:47:22,538 root INFO copying rpy2/rinterface_lib/sexp.py -> build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib 2025-05-14 05:47:22,538 root INFO copying rpy2/rinterface_lib/ffi_proxy.py -> build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib 2025-05-14 05:47:22,538 root INFO copying rpy2/rinterface_lib/openrlib.py -> build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib 2025-05-14 05:47:22,538 root INFO copying rpy2/rinterface_lib/callbacks.py -> build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib 2025-05-14 05:47:22,538 root INFO copying rpy2/rinterface_lib/na_values.py -> build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib 2025-05-14 05:47:22,539 root INFO copying rpy2/rinterface_lib/embedded_mswin.py -> build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib 2025-05-14 05:47:22,539 root INFO copying rpy2/rinterface_lib/memorymanagement.py -> build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib 2025-05-14 05:47:22,539 root INFO copying rpy2/rinterface_lib/bufferprotocol.py -> build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib 2025-05-14 05:47:22,539 root INFO copying rpy2/rinterface_lib/embedded.py -> build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib 2025-05-14 05:47:22,539 root INFO creating build/lib.linux-s390x-cpython-312/rpy2/robjects 2025-05-14 05:47:22,539 root INFO copying rpy2/robjects/conversion.py -> build/lib.linux-s390x-cpython-312/rpy2/robjects 2025-05-14 05:47:22,539 root INFO copying rpy2/robjects/language.py -> build/lib.linux-s390x-cpython-312/rpy2/robjects 2025-05-14 05:47:22,540 root INFO copying rpy2/robjects/__init__.py -> build/lib.linux-s390x-cpython-312/rpy2/robjects 2025-05-14 05:47:22,540 root INFO copying rpy2/robjects/environments.py -> build/lib.linux-s390x-cpython-312/rpy2/robjects 2025-05-14 05:47:22,540 root INFO copying rpy2/robjects/constants.py -> build/lib.linux-s390x-cpython-312/rpy2/robjects 2025-05-14 05:47:22,540 root INFO copying rpy2/robjects/packages_utils.py -> build/lib.linux-s390x-cpython-312/rpy2/robjects 2025-05-14 05:47:22,540 root INFO copying rpy2/robjects/help.py -> build/lib.linux-s390x-cpython-312/rpy2/robjects 2025-05-14 05:47:22,540 root INFO copying rpy2/robjects/robject.py -> build/lib.linux-s390x-cpython-312/rpy2/robjects 2025-05-14 05:47:22,540 root INFO copying rpy2/robjects/pandas2ri.py -> build/lib.linux-s390x-cpython-312/rpy2/robjects 2025-05-14 05:47:22,541 root INFO copying rpy2/robjects/methods.py -> build/lib.linux-s390x-cpython-312/rpy2/robjects 2025-05-14 05:47:22,541 root INFO copying rpy2/robjects/numpy2ri.py -> build/lib.linux-s390x-cpython-312/rpy2/robjects 2025-05-14 05:47:22,541 root INFO copying rpy2/robjects/functions.py -> build/lib.linux-s390x-cpython-312/rpy2/robjects 2025-05-14 05:47:22,541 root INFO copying rpy2/robjects/vectors.py -> build/lib.linux-s390x-cpython-312/rpy2/robjects 2025-05-14 05:47:22,541 root INFO copying rpy2/robjects/packages.py -> build/lib.linux-s390x-cpython-312/rpy2/robjects 2025-05-14 05:47:22,542 root INFO creating build/lib.linux-s390x-cpython-312/rpy2/robjects/lib 2025-05-14 05:47:22,542 root INFO copying rpy2/robjects/lib/__init__.py -> build/lib.linux-s390x-cpython-312/rpy2/robjects/lib 2025-05-14 05:47:22,542 root INFO copying rpy2/robjects/lib/dplyr.py -> build/lib.linux-s390x-cpython-312/rpy2/robjects/lib 2025-05-14 05:47:22,542 root INFO copying rpy2/robjects/lib/ggplot2.py -> build/lib.linux-s390x-cpython-312/rpy2/robjects/lib 2025-05-14 05:47:22,542 root INFO copying rpy2/robjects/lib/grid.py -> build/lib.linux-s390x-cpython-312/rpy2/robjects/lib 2025-05-14 05:47:22,542 root INFO copying rpy2/robjects/lib/grdevices.py -> build/lib.linux-s390x-cpython-312/rpy2/robjects/lib 2025-05-14 05:47:22,542 root INFO copying rpy2/robjects/lib/tidyr.py -> build/lib.linux-s390x-cpython-312/rpy2/robjects/lib 2025-05-14 05:47:22,543 root INFO copying rpy2/robjects/lib/dbplyr.py -> build/lib.linux-s390x-cpython-312/rpy2/robjects/lib 2025-05-14 05:47:22,543 root INFO creating build/lib.linux-s390x-cpython-312/rpy2/interactive 2025-05-14 05:47:22,543 root INFO copying rpy2/interactive/__init__.py -> build/lib.linux-s390x-cpython-312/rpy2/interactive 2025-05-14 05:47:22,543 root INFO copying rpy2/interactive/process_revents.py -> build/lib.linux-s390x-cpython-312/rpy2/interactive 2025-05-14 05:47:22,543 root INFO copying rpy2/interactive/packages.py -> build/lib.linux-s390x-cpython-312/rpy2/interactive 2025-05-14 05:47:22,543 root INFO creating build/lib.linux-s390x-cpython-312/rpy2/ipython 2025-05-14 05:47:22,543 root INFO copying rpy2/ipython/ggplot.py -> build/lib.linux-s390x-cpython-312/rpy2/ipython 2025-05-14 05:47:22,544 root INFO copying rpy2/ipython/__init__.py -> build/lib.linux-s390x-cpython-312/rpy2/ipython 2025-05-14 05:47:22,544 root INFO copying rpy2/ipython/html.py -> build/lib.linux-s390x-cpython-312/rpy2/ipython 2025-05-14 05:47:22,544 root INFO copying rpy2/ipython/rmagic.py -> build/lib.linux-s390x-cpython-312/rpy2/ipython 2025-05-14 05:47:22,544 root INFO creating build/lib.linux-s390x-cpython-312/rpy2/tests 2025-05-14 05:47:22,544 root INFO copying rpy2/tests/__init__.py -> build/lib.linux-s390x-cpython-312/rpy2/tests 2025-05-14 05:47:22,544 root INFO copying rpy2/tests/utils.py -> build/lib.linux-s390x-cpython-312/rpy2/tests 2025-05-14 05:47:22,545 root INFO creating build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,545 root INFO copying rpy2/tests/rinterface/test_noinitialization.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,545 root INFO copying rpy2/tests/rinterface/test_embedded_r.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,545 root INFO copying rpy2/tests/rinterface/test_vector_list.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,545 root INFO copying rpy2/tests/rinterface/test_vector_str.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,545 root INFO copying rpy2/tests/rinterface/__init__.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,545 root INFO copying rpy2/tests/rinterface/test_conversion.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,545 root INFO copying rpy2/tests/rinterface/test_functions.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,546 root INFO copying rpy2/tests/rinterface/test_openrlib.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,546 root INFO copying rpy2/tests/rinterface/test_vector_lang.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,546 root INFO copying rpy2/tests/rinterface/test_sexp.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,546 root INFO copying rpy2/tests/rinterface/test_vector_pairlist.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,546 root INFO copying rpy2/tests/rinterface/test_vector_int.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,546 root INFO copying rpy2/tests/rinterface/test_vector_bool.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,546 root INFO copying rpy2/tests/rinterface/test_vector_numpy.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,547 root INFO copying rpy2/tests/rinterface/test_threading.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,547 root INFO copying rpy2/tests/rinterface/test_environment.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,547 root INFO copying rpy2/tests/rinterface/test_vector_complex.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,547 root INFO copying rpy2/tests/rinterface/test_memorymanagement.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,547 root INFO copying rpy2/tests/rinterface/test_symbol.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,547 root INFO copying rpy2/tests/rinterface/test_vector_float.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,547 root INFO copying rpy2/tests/rinterface/test_externalptr.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,548 root INFO copying rpy2/tests/rinterface/test_na.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,548 root INFO copying rpy2/tests/rinterface/test_bufferprotocol.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,548 root INFO copying rpy2/tests/rinterface/test_callbacks.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,548 root INFO copying rpy2/tests/rinterface/test_endr.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,548 root INFO copying rpy2/tests/rinterface/test_vectors.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,548 root INFO copying rpy2/tests/rinterface/test_vector_byte.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface 2025-05-14 05:47:22,548 root INFO creating build/lib.linux-s390x-cpython-312/rpy2/tests/rlike 2025-05-14 05:47:22,549 root INFO copying rpy2/tests/rlike/test_indexing.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rlike 2025-05-14 05:47:22,549 root INFO copying rpy2/tests/rlike/test_functional.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rlike 2025-05-14 05:47:22,549 root INFO copying rpy2/tests/rlike/test_container.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/rlike 2025-05-14 05:47:22,549 root INFO creating build/lib.linux-s390x-cpython-312/rpy2/tests/robjects 2025-05-14 05:47:22,549 root INFO copying rpy2/tests/robjects/test_robjects.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects 2025-05-14 05:47:22,549 root INFO copying rpy2/tests/robjects/test_array.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects 2025-05-14 05:47:22,549 root INFO copying rpy2/tests/robjects/test_language.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects 2025-05-14 05:47:22,550 root INFO copying rpy2/tests/robjects/__init__.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects 2025-05-14 05:47:22,550 root INFO copying rpy2/tests/robjects/test_conversion.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects 2025-05-14 05:47:22,550 root INFO copying rpy2/tests/robjects/test_function.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects 2025-05-14 05:47:22,550 root INFO copying rpy2/tests/robjects/test_serialization.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects 2025-05-14 05:47:22,550 root INFO copying rpy2/tests/robjects/test_pandas_conversions.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects 2025-05-14 05:47:22,550 root INFO copying rpy2/tests/robjects/test_methods.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects 2025-05-14 05:47:22,551 root INFO copying rpy2/tests/robjects/test_vector_extractdelegator.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects 2025-05-14 05:47:22,551 root INFO copying rpy2/tests/robjects/test_translated_function.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects 2025-05-14 05:47:22,551 root INFO copying rpy2/tests/robjects/test_help.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects 2025-05-14 05:47:22,551 root INFO copying rpy2/tests/robjects/test_vector.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects 2025-05-14 05:47:22,551 root INFO copying rpy2/tests/robjects/test_packages_utils.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects 2025-05-14 05:47:22,551 root INFO copying rpy2/tests/robjects/test_environment.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects 2025-05-14 05:47:22,551 root INFO copying rpy2/tests/robjects/test_packages.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects 2025-05-14 05:47:22,551 root INFO copying rpy2/tests/robjects/test_conversion_numpy.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects 2025-05-14 05:47:22,552 root INFO copying rpy2/tests/robjects/test_rs4.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects 2025-05-14 05:47:22,552 root INFO copying rpy2/tests/robjects/test_dataframe.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects 2025-05-14 05:47:22,552 root INFO copying rpy2/tests/robjects/test_vector_factor.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects 2025-05-14 05:47:22,552 root INFO copying rpy2/tests/robjects/test_formula.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects 2025-05-14 05:47:22,552 root INFO copying rpy2/tests/robjects/test_vector_datetime.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects 2025-05-14 05:47:22,552 root INFO creating build/lib.linux-s390x-cpython-312/rpy2/tests/ipython 2025-05-14 05:47:22,552 root INFO copying rpy2/tests/ipython/__init__.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/ipython 2025-05-14 05:47:22,553 root INFO copying rpy2/tests/ipython/test_ggplot.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/ipython 2025-05-14 05:47:22,553 root INFO copying rpy2/tests/ipython/test_rmagic.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/ipython 2025-05-14 05:47:22,553 root INFO copying rpy2/tests/ipython/test_html.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/ipython 2025-05-14 05:47:22,553 root INFO creating build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/lib 2025-05-14 05:47:22,553 root INFO copying rpy2/tests/robjects/lib/__init__.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/lib 2025-05-14 05:47:22,553 root INFO copying rpy2/tests/robjects/lib/test_dbplyr.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/lib 2025-05-14 05:47:22,553 root INFO copying rpy2/tests/robjects/lib/test_grdevices.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/lib 2025-05-14 05:47:22,554 root INFO copying rpy2/tests/robjects/lib/test_grid.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/lib 2025-05-14 05:47:22,554 root INFO copying rpy2/tests/robjects/lib/test_ggplot2.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/lib 2025-05-14 05:47:22,554 root INFO copying rpy2/tests/robjects/lib/test_tidyr.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/lib 2025-05-14 05:47:22,554 root INFO copying rpy2/tests/robjects/lib/test_dplyr.py -> build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/lib 2025-05-14 05:47:22,554 root INFO running egg_info 2025-05-14 05:47:22,557 root INFO writing rpy2.egg-info/PKG-INFO 2025-05-14 05:47:22,563 root INFO writing dependency_links to rpy2.egg-info/dependency_links.txt 2025-05-14 05:47:22,566 root INFO writing requirements to rpy2.egg-info/requires.txt 2025-05-14 05:47:22,566 root INFO writing top-level names to rpy2.egg-info/top_level.txt 2025-05-14 05:47:22,573 root INFO reading manifest file 'rpy2.egg-info/SOURCES.txt' 2025-05-14 05:47:22,575 root INFO reading manifest template 'MANIFEST.in' 2025-05-14 05:47:22,580 root WARNING warning: no files found matching 'README' anywhere in distribution 2025-05-14 05:47:22,581 root WARNING warning: no previously-included files matching '*patch*' found anywhere in distribution 2025-05-14 05:47:22,581 root WARNING warning: no previously-included files matching '*diff*' found anywhere in distribution 2025-05-14 05:47:22,581 root WARNING warning: no previously-included files matching '.hg' found anywhere in distribution 2025-05-14 05:47:22,581 root WARNING warning: no files found matching 'MANIFEST' 2025-05-14 05:47:22,582 root WARNING warning: no files found matching '_rinterface_cffi_build' 2025-05-14 05:47:22,582 root WARNING warning: no files found matching 'rpy/__init__.py' 2025-05-14 05:47:22,582 root WARNING warning: no files found matching 'rpy/situation.py' 2025-05-14 05:47:22,582 root WARNING warning: no files found matching '*.py' under directory 'rpy/robjects' 2025-05-14 05:47:22,582 root WARNING warning: no files found matching '*.py' under directory 'rpy/ipython' 2025-05-14 05:47:22,582 root WARNING warning: no files found matching '*.py' under directory 'rpy/interactive' 2025-05-14 05:47:22,582 root WARNING warning: no files found matching '*.py' under directory 'rpy/rlike' 2025-05-14 05:47:22,582 root WARNING no previously-included directories found matching 'dist' 2025-05-14 05:47:22,582 root WARNING warning: no files found matching 'doc/source/rpy2_logo.png' 2025-05-14 05:47:22,582 root INFO adding license file 'LICENSE' 2025-05-14 05:47:22,582 root INFO adding license file 'AUTHORS' 2025-05-14 05:47:22,584 root INFO writing manifest file 'rpy2.egg-info/SOURCES.txt' 2025-05-14 05:47:22,586 root INFO copying rpy2/rinterface_lib/R_API.h -> build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib 2025-05-14 05:47:22,586 root INFO copying rpy2/rinterface_lib/R_API_eventloop.h -> build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib 2025-05-14 05:47:22,587 root INFO copying rpy2/rinterface_lib/R_API_eventloop.c -> build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib 2025-05-14 05:47:22,587 root INFO copying rpy2/rinterface_lib/RPY2.h -> build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib 2025-05-14 05:47:22,587 root INFO copying rpy2/rinterface_lib/_bufferprotocol.c -> build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib 2025-05-14 05:47:22,587 root WARNING file _rinterface_cffi_abi.py (for module _rinterface_cffi_abi) not found 2025-05-14 05:47:22,589 root INFO generating cffi module 'build/lib.linux-s390x-cpython-312/_rinterface_cffi_abi.py' 2025-05-14 05:47:22,598 root INFO running build_ext 2025-05-14 05:47:22,598 root INFO generating cffi module 'build/temp.linux-s390x-cpython-312/_rinterface_cffi_api.c' 2025-05-14 05:47:22,598 root INFO creating build/temp.linux-s390x-cpython-312 2025-05-14 05:47:22,616 root INFO building 'rpy2.rinterface_lib._bufferprotocol' extension 2025-05-14 05:47:22,617 root INFO creating build/temp.linux-s390x-cpython-312/rpy2/rinterface_lib 2025-05-14 05:47:22,617 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c rpy2/rinterface_lib/_bufferprotocol.c -o build/temp.linux-s390x-cpython-312/rpy2/rinterface_lib/_bufferprotocol.o 2025-05-14 05:47:22,698 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-s390x-cpython-312/rpy2/rinterface_lib/_bufferprotocol.o -L/usr/lib -o build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib/_bufferprotocol.cpython-312-s390x-linux-musl.so 2025-05-14 05:47:22,705 root INFO building '_rinterface_cffi_api' extension 2025-05-14 05:47:22,705 root INFO creating build/temp.linux-s390x-cpython-312/build/temp.linux-s390x-cpython-312 2025-05-14 05:47:22,705 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -DRPY2_RLEN_LONG=True -DR_INTERFACE_PTRS=True -Irpy2/rinterface_lib/ -I/usr/include/python3.12 -c build/temp.linux-s390x-cpython-312/_rinterface_cffi_api.c -o build/temp.linux-s390x-cpython-312/build/temp.linux-s390x-cpython-312/_rinterface_cffi_api.o -std=c99 2025-05-14 05:47:24,556 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-s390x-cpython-312/build/temp.linux-s390x-cpython-312/_rinterface_cffi_api.o -L/usr/lib/R/lib -L/usr/lib -lR -lpcre2-8 -ldeflate -lzstd -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n -lopenblas -o build/lib.linux-s390x-cpython-312/_rinterface_cffi_api.abi3.so -Wl,--export-dynamic -fopenmp -Wl,--as-needed,-O1,--sort-common -Wl,-rpath,/usr/lib/R/lib 2025-05-14 05:47:24,584 root INFO installing to build/bdist.linux-s390x/wheel 2025-05-14 05:47:24,584 root INFO running install 2025-05-14 05:47:24,594 root INFO running install_lib 2025-05-14 05:47:24,597 root INFO creating build/bdist.linux-s390x/wheel 2025-05-14 05:47:24,597 root INFO copying build/lib.linux-s390x-cpython-312/_rinterface_cffi_abi.py -> build/bdist.linux-s390x/wheel/. 2025-05-14 05:47:24,597 root INFO copying build/lib.linux-s390x-cpython-312/_rinterface_cffi_api.abi3.so -> build/bdist.linux-s390x/wheel/. 2025-05-14 05:47:24,597 root INFO creating build/bdist.linux-s390x/wheel/rpy2 2025-05-14 05:47:24,597 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/rinterface.py -> build/bdist.linux-s390x/wheel/./rpy2 2025-05-14 05:47:24,598 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/__init__.py -> build/bdist.linux-s390x/wheel/./rpy2 2025-05-14 05:47:24,598 root INFO creating build/bdist.linux-s390x/wheel/rpy2/rinterface_lib 2025-05-14 05:47:24,598 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib/_rinterface_capi.py -> build/bdist.linux-s390x/wheel/./rpy2/rinterface_lib 2025-05-14 05:47:24,598 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib/conversion.py -> build/bdist.linux-s390x/wheel/./rpy2/rinterface_lib 2025-05-14 05:47:24,598 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib/__init__.py -> build/bdist.linux-s390x/wheel/./rpy2/rinterface_lib 2025-05-14 05:47:24,598 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib/sexp.py -> build/bdist.linux-s390x/wheel/./rpy2/rinterface_lib 2025-05-14 05:47:24,598 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib/ffi_proxy.py -> build/bdist.linux-s390x/wheel/./rpy2/rinterface_lib 2025-05-14 05:47:24,598 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib/openrlib.py -> build/bdist.linux-s390x/wheel/./rpy2/rinterface_lib 2025-05-14 05:47:24,598 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib/callbacks.py -> build/bdist.linux-s390x/wheel/./rpy2/rinterface_lib 2025-05-14 05:47:24,599 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib/na_values.py -> build/bdist.linux-s390x/wheel/./rpy2/rinterface_lib 2025-05-14 05:47:24,599 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib/embedded_mswin.py -> build/bdist.linux-s390x/wheel/./rpy2/rinterface_lib 2025-05-14 05:47:24,599 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib/_bufferprotocol.c -> build/bdist.linux-s390x/wheel/./rpy2/rinterface_lib 2025-05-14 05:47:24,599 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib/R_API_eventloop.c -> build/bdist.linux-s390x/wheel/./rpy2/rinterface_lib 2025-05-14 05:47:24,599 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib/R_API_eventloop.h -> build/bdist.linux-s390x/wheel/./rpy2/rinterface_lib 2025-05-14 05:47:24,599 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib/memorymanagement.py -> build/bdist.linux-s390x/wheel/./rpy2/rinterface_lib 2025-05-14 05:47:24,599 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib/bufferprotocol.py -> build/bdist.linux-s390x/wheel/./rpy2/rinterface_lib 2025-05-14 05:47:24,599 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib/embedded.py -> build/bdist.linux-s390x/wheel/./rpy2/rinterface_lib 2025-05-14 05:47:24,599 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib/R_API.h -> build/bdist.linux-s390x/wheel/./rpy2/rinterface_lib 2025-05-14 05:47:24,599 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib/RPY2.h -> build/bdist.linux-s390x/wheel/./rpy2/rinterface_lib 2025-05-14 05:47:24,600 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/rinterface_lib/_bufferprotocol.cpython-312-s390x-linux-musl.so -> build/bdist.linux-s390x/wheel/./rpy2/rinterface_lib 2025-05-14 05:47:24,600 root INFO creating build/bdist.linux-s390x/wheel/rpy2/rlike 2025-05-14 05:47:24,600 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/rlike/functional.py -> build/bdist.linux-s390x/wheel/./rpy2/rlike 2025-05-14 05:47:24,600 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/rlike/__init__.py -> build/bdist.linux-s390x/wheel/./rpy2/rlike 2025-05-14 05:47:24,600 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/rlike/container.py -> build/bdist.linux-s390x/wheel/./rpy2/rlike 2025-05-14 05:47:24,600 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/rlike/indexing.py -> build/bdist.linux-s390x/wheel/./rpy2/rlike 2025-05-14 05:47:24,600 root INFO creating build/bdist.linux-s390x/wheel/rpy2/ipython 2025-05-14 05:47:24,600 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/ipython/ggplot.py -> build/bdist.linux-s390x/wheel/./rpy2/ipython 2025-05-14 05:47:24,600 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/ipython/__init__.py -> build/bdist.linux-s390x/wheel/./rpy2/ipython 2025-05-14 05:47:24,600 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/ipython/html.py -> build/bdist.linux-s390x/wheel/./rpy2/ipython 2025-05-14 05:47:24,601 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/ipython/rmagic.py -> build/bdist.linux-s390x/wheel/./rpy2/ipython 2025-05-14 05:47:24,601 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/situation.py -> build/bdist.linux-s390x/wheel/./rpy2 2025-05-14 05:47:24,601 root INFO creating build/bdist.linux-s390x/wheel/rpy2/tests 2025-05-14 05:47:24,601 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/__init__.py -> build/bdist.linux-s390x/wheel/./rpy2/tests 2025-05-14 05:47:24,601 root INFO creating build/bdist.linux-s390x/wheel/rpy2/tests/rlike 2025-05-14 05:47:24,601 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rlike/test_indexing.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rlike 2025-05-14 05:47:24,601 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rlike/test_functional.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rlike 2025-05-14 05:47:24,601 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rlike/test_container.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rlike 2025-05-14 05:47:24,601 root INFO creating build/bdist.linux-s390x/wheel/rpy2/tests/rinterface 2025-05-14 05:47:24,602 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_noinitialization.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,602 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_embedded_r.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,602 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_vector_list.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,602 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_vector_str.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,602 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/__init__.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,602 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_conversion.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,602 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_functions.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,602 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_openrlib.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,602 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_vector_lang.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,602 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_sexp.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,603 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_vector_pairlist.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,603 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_vector_int.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,603 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_vector_bool.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,603 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_vector_numpy.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,603 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_threading.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,603 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_environment.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,603 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_vector_complex.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,603 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_memorymanagement.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,603 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_symbol.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,603 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_vector_float.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,604 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_externalptr.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,604 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_na.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,604 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_bufferprotocol.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,604 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_callbacks.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,604 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_endr.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,604 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_vectors.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,604 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/rinterface/test_vector_byte.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/rinterface 2025-05-14 05:47:24,604 root INFO creating build/bdist.linux-s390x/wheel/rpy2/tests/ipython 2025-05-14 05:47:24,604 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/ipython/__init__.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/ipython 2025-05-14 05:47:24,604 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/ipython/test_ggplot.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/ipython 2025-05-14 05:47:24,604 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/ipython/test_rmagic.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/ipython 2025-05-14 05:47:24,605 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/ipython/test_html.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/ipython 2025-05-14 05:47:24,605 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/utils.py -> build/bdist.linux-s390x/wheel/./rpy2/tests 2025-05-14 05:47:24,605 root INFO creating build/bdist.linux-s390x/wheel/rpy2/tests/robjects 2025-05-14 05:47:24,605 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/test_robjects.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects 2025-05-14 05:47:24,605 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/test_array.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects 2025-05-14 05:47:24,605 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/test_language.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects 2025-05-14 05:47:24,605 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/__init__.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects 2025-05-14 05:47:24,605 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/test_conversion.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects 2025-05-14 05:47:24,605 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/test_function.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects 2025-05-14 05:47:24,606 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/test_serialization.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects 2025-05-14 05:47:24,606 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/test_pandas_conversions.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects 2025-05-14 05:47:24,606 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/test_methods.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects 2025-05-14 05:47:24,606 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/test_vector_extractdelegator.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects 2025-05-14 05:47:24,606 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/test_translated_function.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects 2025-05-14 05:47:24,606 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/test_help.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects 2025-05-14 05:47:24,606 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/test_vector.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects 2025-05-14 05:47:24,606 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/test_packages_utils.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects 2025-05-14 05:47:24,606 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/test_environment.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects 2025-05-14 05:47:24,606 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/test_packages.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects 2025-05-14 05:47:24,606 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/test_conversion_numpy.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects 2025-05-14 05:47:24,607 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/test_rs4.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects 2025-05-14 05:47:24,607 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/test_dataframe.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects 2025-05-14 05:47:24,607 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/test_vector_factor.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects 2025-05-14 05:47:24,607 root INFO creating build/bdist.linux-s390x/wheel/rpy2/tests/robjects/lib 2025-05-14 05:47:24,607 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/lib/__init__.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects/lib 2025-05-14 05:47:24,607 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/lib/test_dbplyr.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects/lib 2025-05-14 05:47:24,607 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/lib/test_grdevices.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects/lib 2025-05-14 05:47:24,607 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/lib/test_grid.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects/lib 2025-05-14 05:47:24,607 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/lib/test_ggplot2.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects/lib 2025-05-14 05:47:24,607 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/lib/test_tidyr.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects/lib 2025-05-14 05:47:24,608 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/lib/test_dplyr.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects/lib 2025-05-14 05:47:24,608 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/test_formula.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects 2025-05-14 05:47:24,608 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/tests/robjects/test_vector_datetime.py -> build/bdist.linux-s390x/wheel/./rpy2/tests/robjects 2025-05-14 05:47:24,608 root INFO creating build/bdist.linux-s390x/wheel/rpy2/interactive 2025-05-14 05:47:24,608 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/interactive/__init__.py -> build/bdist.linux-s390x/wheel/./rpy2/interactive 2025-05-14 05:47:24,608 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/interactive/process_revents.py -> build/bdist.linux-s390x/wheel/./rpy2/interactive 2025-05-14 05:47:24,608 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/interactive/packages.py -> build/bdist.linux-s390x/wheel/./rpy2/interactive 2025-05-14 05:47:24,608 root INFO creating build/bdist.linux-s390x/wheel/rpy2/robjects 2025-05-14 05:47:24,608 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/robjects/conversion.py -> build/bdist.linux-s390x/wheel/./rpy2/robjects 2025-05-14 05:47:24,609 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/robjects/language.py -> build/bdist.linux-s390x/wheel/./rpy2/robjects 2025-05-14 05:47:24,609 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/robjects/__init__.py -> build/bdist.linux-s390x/wheel/./rpy2/robjects 2025-05-14 05:47:24,609 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/robjects/environments.py -> build/bdist.linux-s390x/wheel/./rpy2/robjects 2025-05-14 05:47:24,609 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/robjects/constants.py -> build/bdist.linux-s390x/wheel/./rpy2/robjects 2025-05-14 05:47:24,609 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/robjects/packages_utils.py -> build/bdist.linux-s390x/wheel/./rpy2/robjects 2025-05-14 05:47:24,609 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/robjects/help.py -> build/bdist.linux-s390x/wheel/./rpy2/robjects 2025-05-14 05:47:24,609 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/robjects/robject.py -> build/bdist.linux-s390x/wheel/./rpy2/robjects 2025-05-14 05:47:24,609 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/robjects/pandas2ri.py -> build/bdist.linux-s390x/wheel/./rpy2/robjects 2025-05-14 05:47:24,609 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/robjects/methods.py -> build/bdist.linux-s390x/wheel/./rpy2/robjects 2025-05-14 05:47:24,609 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/robjects/numpy2ri.py -> build/bdist.linux-s390x/wheel/./rpy2/robjects 2025-05-14 05:47:24,610 root INFO creating build/bdist.linux-s390x/wheel/rpy2/robjects/lib 2025-05-14 05:47:24,610 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/robjects/lib/__init__.py -> build/bdist.linux-s390x/wheel/./rpy2/robjects/lib 2025-05-14 05:47:24,610 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/robjects/lib/dplyr.py -> build/bdist.linux-s390x/wheel/./rpy2/robjects/lib 2025-05-14 05:47:24,610 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/robjects/lib/ggplot2.py -> build/bdist.linux-s390x/wheel/./rpy2/robjects/lib 2025-05-14 05:47:24,610 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/robjects/lib/grid.py -> build/bdist.linux-s390x/wheel/./rpy2/robjects/lib 2025-05-14 05:47:24,610 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/robjects/lib/grdevices.py -> build/bdist.linux-s390x/wheel/./rpy2/robjects/lib 2025-05-14 05:47:24,610 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/robjects/lib/tidyr.py -> build/bdist.linux-s390x/wheel/./rpy2/robjects/lib 2025-05-14 05:47:24,610 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/robjects/lib/dbplyr.py -> build/bdist.linux-s390x/wheel/./rpy2/robjects/lib 2025-05-14 05:47:24,610 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/robjects/functions.py -> build/bdist.linux-s390x/wheel/./rpy2/robjects 2025-05-14 05:47:24,610 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/robjects/vectors.py -> build/bdist.linux-s390x/wheel/./rpy2/robjects 2025-05-14 05:47:24,611 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/robjects/packages.py -> build/bdist.linux-s390x/wheel/./rpy2/robjects 2025-05-14 05:47:24,611 root INFO copying build/lib.linux-s390x-cpython-312/rpy2/_rinterface_cffi_build.py -> build/bdist.linux-s390x/wheel/./rpy2 2025-05-14 05:47:24,611 root INFO running install_egg_info 2025-05-14 05:47:24,614 root INFO Copying rpy2.egg-info to build/bdist.linux-s390x/wheel/./rpy2-3.5.17-py3.12.egg-info 2025-05-14 05:47:24,614 root INFO running install_scripts 2025-05-14 05:47:24,618 root INFO creating build/bdist.linux-s390x/wheel/rpy2-3.5.17.dist-info/WHEEL 2025-05-14 05:47:24,619 wheel INFO creating '/home/buildozer/aports/community/py3-rpy2/src/rpy2-3.5.17/.dist/.tmp-q0_qkobr/rpy2-3.5.17-cp312-cp312-linux_s390x.whl' and adding 'build/bdist.linux-s390x/wheel' to it 2025-05-14 05:47:24,619 wheel INFO adding '_rinterface_cffi_abi.py' 2025-05-14 05:47:24,620 wheel INFO adding '_rinterface_cffi_api.abi3.so' 2025-05-14 05:47:24,620 wheel INFO adding 'rpy2/__init__.py' 2025-05-14 05:47:24,620 wheel INFO adding 'rpy2/_rinterface_cffi_build.py' 2025-05-14 05:47:24,620 wheel INFO adding 'rpy2/rinterface.py' 2025-05-14 05:47:24,620 wheel INFO adding 'rpy2/situation.py' 2025-05-14 05:47:24,620 wheel INFO adding 'rpy2/interactive/__init__.py' 2025-05-14 05:47:24,621 wheel INFO adding 'rpy2/interactive/packages.py' 2025-05-14 05:47:24,621 wheel INFO adding 'rpy2/interactive/process_revents.py' 2025-05-14 05:47:24,621 wheel INFO adding 'rpy2/ipython/__init__.py' 2025-05-14 05:47:24,621 wheel INFO adding 'rpy2/ipython/ggplot.py' 2025-05-14 05:47:24,621 wheel INFO adding 'rpy2/ipython/html.py' 2025-05-14 05:47:24,621 wheel INFO adding 'rpy2/ipython/rmagic.py' 2025-05-14 05:47:24,621 wheel INFO adding 'rpy2/rinterface_lib/RPY2.h' 2025-05-14 05:47:24,621 wheel INFO adding 'rpy2/rinterface_lib/R_API.h' 2025-05-14 05:47:24,622 wheel INFO adding 'rpy2/rinterface_lib/R_API_eventloop.c' 2025-05-14 05:47:24,622 wheel INFO adding 'rpy2/rinterface_lib/R_API_eventloop.h' 2025-05-14 05:47:24,622 wheel INFO adding 'rpy2/rinterface_lib/__init__.py' 2025-05-14 05:47:24,622 wheel INFO adding 'rpy2/rinterface_lib/_bufferprotocol.c' 2025-05-14 05:47:24,622 wheel INFO adding 'rpy2/rinterface_lib/_bufferprotocol.cpython-312-s390x-linux-musl.so' 2025-05-14 05:47:24,622 wheel INFO adding 'rpy2/rinterface_lib/_rinterface_capi.py' 2025-05-14 05:47:24,622 wheel INFO adding 'rpy2/rinterface_lib/bufferprotocol.py' 2025-05-14 05:47:24,622 wheel INFO adding 'rpy2/rinterface_lib/callbacks.py' 2025-05-14 05:47:24,623 wheel INFO adding 'rpy2/rinterface_lib/conversion.py' 2025-05-14 05:47:24,623 wheel INFO adding 'rpy2/rinterface_lib/embedded.py' 2025-05-14 05:47:24,623 wheel INFO adding 'rpy2/rinterface_lib/embedded_mswin.py' 2025-05-14 05:47:24,623 wheel INFO adding 'rpy2/rinterface_lib/ffi_proxy.py' 2025-05-14 05:47:24,623 wheel INFO adding 'rpy2/rinterface_lib/memorymanagement.py' 2025-05-14 05:47:24,623 wheel INFO adding 'rpy2/rinterface_lib/na_values.py' 2025-05-14 05:47:24,623 wheel INFO adding 'rpy2/rinterface_lib/openrlib.py' 2025-05-14 05:47:24,623 wheel INFO adding 'rpy2/rinterface_lib/sexp.py' 2025-05-14 05:47:24,624 wheel INFO adding 'rpy2/rlike/__init__.py' 2025-05-14 05:47:24,624 wheel INFO adding 'rpy2/rlike/container.py' 2025-05-14 05:47:24,624 wheel INFO adding 'rpy2/rlike/functional.py' 2025-05-14 05:47:24,624 wheel INFO adding 'rpy2/rlike/indexing.py' 2025-05-14 05:47:24,624 wheel INFO adding 'rpy2/robjects/__init__.py' 2025-05-14 05:47:24,624 wheel INFO adding 'rpy2/robjects/constants.py' 2025-05-14 05:47:24,624 wheel INFO adding 'rpy2/robjects/conversion.py' 2025-05-14 05:47:24,625 wheel INFO adding 'rpy2/robjects/environments.py' 2025-05-14 05:47:24,625 wheel INFO adding 'rpy2/robjects/functions.py' 2025-05-14 05:47:24,625 wheel INFO adding 'rpy2/robjects/help.py' 2025-05-14 05:47:24,625 wheel INFO adding 'rpy2/robjects/language.py' 2025-05-14 05:47:24,625 wheel INFO adding 'rpy2/robjects/methods.py' 2025-05-14 05:47:24,625 wheel INFO adding 'rpy2/robjects/numpy2ri.py' 2025-05-14 05:47:24,625 wheel INFO adding 'rpy2/robjects/packages.py' 2025-05-14 05:47:24,625 wheel INFO adding 'rpy2/robjects/packages_utils.py' 2025-05-14 05:47:24,626 wheel INFO adding 'rpy2/robjects/pandas2ri.py' 2025-05-14 05:47:24,626 wheel INFO adding 'rpy2/robjects/robject.py' 2025-05-14 05:47:24,626 wheel INFO adding 'rpy2/robjects/vectors.py' 2025-05-14 05:47:24,626 wheel INFO adding 'rpy2/robjects/lib/__init__.py' 2025-05-14 05:47:24,626 wheel INFO adding 'rpy2/robjects/lib/dbplyr.py' 2025-05-14 05:47:24,626 wheel INFO adding 'rpy2/robjects/lib/dplyr.py' 2025-05-14 05:47:24,626 wheel INFO adding 'rpy2/robjects/lib/ggplot2.py' 2025-05-14 05:47:24,627 wheel INFO adding 'rpy2/robjects/lib/grdevices.py' 2025-05-14 05:47:24,627 wheel INFO adding 'rpy2/robjects/lib/grid.py' 2025-05-14 05:47:24,627 wheel INFO adding 'rpy2/robjects/lib/tidyr.py' 2025-05-14 05:47:24,627 wheel INFO adding 'rpy2/tests/__init__.py' 2025-05-14 05:47:24,627 wheel INFO adding 'rpy2/tests/utils.py' 2025-05-14 05:47:24,627 wheel INFO adding 'rpy2/tests/ipython/__init__.py' 2025-05-14 05:47:24,627 wheel INFO adding 'rpy2/tests/ipython/test_ggplot.py' 2025-05-14 05:47:24,627 wheel INFO adding 'rpy2/tests/ipython/test_html.py' 2025-05-14 05:47:24,628 wheel INFO adding 'rpy2/tests/ipython/test_rmagic.py' 2025-05-14 05:47:24,628 wheel INFO adding 'rpy2/tests/rinterface/__init__.py' 2025-05-14 05:47:24,628 wheel INFO adding 'rpy2/tests/rinterface/test_bufferprotocol.py' 2025-05-14 05:47:24,628 wheel INFO adding 'rpy2/tests/rinterface/test_callbacks.py' 2025-05-14 05:47:24,628 wheel INFO adding 'rpy2/tests/rinterface/test_conversion.py' 2025-05-14 05:47:24,628 wheel INFO adding 'rpy2/tests/rinterface/test_embedded_r.py' 2025-05-14 05:47:24,628 wheel INFO adding 'rpy2/tests/rinterface/test_endr.py' 2025-05-14 05:47:24,628 wheel INFO adding 'rpy2/tests/rinterface/test_environment.py' 2025-05-14 05:47:24,629 wheel INFO adding 'rpy2/tests/rinterface/test_externalptr.py' 2025-05-14 05:47:24,629 wheel INFO adding 'rpy2/tests/rinterface/test_functions.py' 2025-05-14 05:47:24,629 wheel INFO adding 'rpy2/tests/rinterface/test_memorymanagement.py' 2025-05-14 05:47:24,629 wheel INFO adding 'rpy2/tests/rinterface/test_na.py' 2025-05-14 05:47:24,629 wheel INFO adding 'rpy2/tests/rinterface/test_noinitialization.py' 2025-05-14 05:47:24,629 wheel INFO adding 'rpy2/tests/rinterface/test_openrlib.py' 2025-05-14 05:47:24,629 wheel INFO adding 'rpy2/tests/rinterface/test_sexp.py' 2025-05-14 05:47:24,629 wheel INFO adding 'rpy2/tests/rinterface/test_symbol.py' 2025-05-14 05:47:24,629 wheel INFO adding 'rpy2/tests/rinterface/test_threading.py' 2025-05-14 05:47:24,630 wheel INFO adding 'rpy2/tests/rinterface/test_vector_bool.py' 2025-05-14 05:47:24,630 wheel INFO adding 'rpy2/tests/rinterface/test_vector_byte.py' 2025-05-14 05:47:24,630 wheel INFO adding 'rpy2/tests/rinterface/test_vector_complex.py' 2025-05-14 05:47:24,630 wheel INFO adding 'rpy2/tests/rinterface/test_vector_float.py' 2025-05-14 05:47:24,630 wheel INFO adding 'rpy2/tests/rinterface/test_vector_int.py' 2025-05-14 05:47:24,630 wheel INFO adding 'rpy2/tests/rinterface/test_vector_lang.py' 2025-05-14 05:47:24,630 wheel INFO adding 'rpy2/tests/rinterface/test_vector_list.py' 2025-05-14 05:47:24,630 wheel INFO adding 'rpy2/tests/rinterface/test_vector_numpy.py' 2025-05-14 05:47:24,631 wheel INFO adding 'rpy2/tests/rinterface/test_vector_pairlist.py' 2025-05-14 05:47:24,631 wheel INFO adding 'rpy2/tests/rinterface/test_vector_str.py' 2025-05-14 05:47:24,631 wheel INFO adding 'rpy2/tests/rinterface/test_vectors.py' 2025-05-14 05:47:24,631 wheel INFO adding 'rpy2/tests/rlike/test_container.py' 2025-05-14 05:47:24,631 wheel INFO adding 'rpy2/tests/rlike/test_functional.py' 2025-05-14 05:47:24,631 wheel INFO adding 'rpy2/tests/rlike/test_indexing.py' 2025-05-14 05:47:24,631 wheel INFO adding 'rpy2/tests/robjects/__init__.py' 2025-05-14 05:47:24,631 wheel INFO adding 'rpy2/tests/robjects/test_array.py' 2025-05-14 05:47:24,631 wheel INFO adding 'rpy2/tests/robjects/test_conversion.py' 2025-05-14 05:47:24,632 wheel INFO adding 'rpy2/tests/robjects/test_conversion_numpy.py' 2025-05-14 05:47:24,632 wheel INFO adding 'rpy2/tests/robjects/test_dataframe.py' 2025-05-14 05:47:24,632 wheel INFO adding 'rpy2/tests/robjects/test_environment.py' 2025-05-14 05:47:24,632 wheel INFO adding 'rpy2/tests/robjects/test_formula.py' 2025-05-14 05:47:24,632 wheel INFO adding 'rpy2/tests/robjects/test_function.py' 2025-05-14 05:47:24,632 wheel INFO adding 'rpy2/tests/robjects/test_help.py' 2025-05-14 05:47:24,632 wheel INFO adding 'rpy2/tests/robjects/test_language.py' 2025-05-14 05:47:24,632 wheel INFO adding 'rpy2/tests/robjects/test_methods.py' 2025-05-14 05:47:24,633 wheel INFO adding 'rpy2/tests/robjects/test_packages.py' 2025-05-14 05:47:24,633 wheel INFO adding 'rpy2/tests/robjects/test_packages_utils.py' 2025-05-14 05:47:24,633 wheel INFO adding 'rpy2/tests/robjects/test_pandas_conversions.py' 2025-05-14 05:47:24,633 wheel INFO adding 'rpy2/tests/robjects/test_robjects.py' 2025-05-14 05:47:24,633 wheel INFO adding 'rpy2/tests/robjects/test_rs4.py' 2025-05-14 05:47:24,633 wheel INFO adding 'rpy2/tests/robjects/test_serialization.py' 2025-05-14 05:47:24,633 wheel INFO adding 'rpy2/tests/robjects/test_translated_function.py' 2025-05-14 05:47:24,633 wheel INFO adding 'rpy2/tests/robjects/test_vector.py' 2025-05-14 05:47:24,633 wheel INFO adding 'rpy2/tests/robjects/test_vector_datetime.py' 2025-05-14 05:47:24,634 wheel INFO adding 'rpy2/tests/robjects/test_vector_extractdelegator.py' 2025-05-14 05:47:24,634 wheel INFO adding 'rpy2/tests/robjects/test_vector_factor.py' 2025-05-14 05:47:24,634 wheel INFO adding 'rpy2/tests/robjects/lib/__init__.py' 2025-05-14 05:47:24,634 wheel INFO adding 'rpy2/tests/robjects/lib/test_dbplyr.py' 2025-05-14 05:47:24,634 wheel INFO adding 'rpy2/tests/robjects/lib/test_dplyr.py' 2025-05-14 05:47:24,634 wheel INFO adding 'rpy2/tests/robjects/lib/test_ggplot2.py' 2025-05-14 05:47:24,634 wheel INFO adding 'rpy2/tests/robjects/lib/test_grdevices.py' 2025-05-14 05:47:24,634 wheel INFO adding 'rpy2/tests/robjects/lib/test_grid.py' 2025-05-14 05:47:24,634 wheel INFO adding 'rpy2/tests/robjects/lib/test_tidyr.py' 2025-05-14 05:47:24,635 wheel INFO adding 'rpy2-3.5.17.dist-info/licenses/AUTHORS' 2025-05-14 05:47:24,635 wheel INFO adding 'rpy2-3.5.17.dist-info/licenses/LICENSE' 2025-05-14 05:47:24,635 wheel INFO adding 'rpy2-3.5.17.dist-info/METADATA' 2025-05-14 05:47:24,635 wheel INFO adding 'rpy2-3.5.17.dist-info/WHEEL' 2025-05-14 05:47:24,635 wheel INFO adding 'rpy2-3.5.17.dist-info/top_level.txt' 2025-05-14 05:47:24,636 wheel INFO adding 'rpy2-3.5.17.dist-info/RECORD' 2025-05-14 05:47:24,636 root INFO removing build/bdist.linux-s390x/wheel 2025-05-14 05:47:24,638 gpep517 INFO The backend produced .dist/rpy2-3.5.17-cp312-cp312-linux_s390x.whl rpy2-3.5.17-cp312-cp312-linux_s390x.whl cffi mode: CFFI_MODE.ANY --- CFFI_MODE.ANY ABI mode interface built. API mode interface built. To change the API/ABI build mode, set or modify the environment variable RPY2_CFFI_MODE. ============================= test session starts ============================== platform linux -- Python 3.12.10, pytest-8.3.5, pluggy-1.5.0 -- /home/buildozer/aports/community/py3-rpy2/src/rpy2-3.5.17/.testenv/bin/python3 cachedir: .pytest_cache rootdir: /home/buildozer/aports/community/py3-rpy2/src/rpy2-3.5.17 configfile: pyproject.toml testpaths: rpy2/tests collecting ... collected 363 items / 30 errors / 1 deselected / 362 selected ==================================== ERRORS ==================================== ______________ ERROR collecting rpy2/tests/ipython/test_ggplot.py ______________ rpy2/tests/ipython/test_ggplot.py:2: in from rpy2.robjects.packages import PackageNotInstalledError rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ------------------------------- Captured stderr -------------------------------- During startup - Warning messages: 1: package "methods" in options("defaultPackages") was not found 2: package ‘utils’ in options("defaultPackages") was not found 3: package ‘grDevices’ in options("defaultPackages") was not found 4: package ‘graphics’ in options("defaultPackages") was not found 5: package ‘stats’ in options("defaultPackages") was not found 6: package ‘methods’ in options("defaultPackages") was not found _______________ ERROR collecting rpy2/tests/ipython/test_html.py _______________ rpy2/tests/ipython/test_html.py:4: in from rpy2.robjects import vectors rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ______________ ERROR collecting rpy2/tests/ipython/test_rmagic.py ______________ rpy2/tests/ipython/test_rmagic.py:8: in import rpy2.robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ___________ ERROR collecting rpy2/tests/robjects/lib/test_dbplyr.py ____________ rpy2/tests/robjects/lib/test_dbplyr.py:2: in from rpy2.robjects import packages rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ____________ ERROR collecting rpy2/tests/robjects/lib/test_dplyr.py ____________ rpy2/tests/robjects/lib/test_dplyr.py:2: in from rpy2.robjects import packages rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ___________ ERROR collecting rpy2/tests/robjects/lib/test_ggplot2.py ___________ rpy2/tests/robjects/lib/test_ggplot2.py:3: in from rpy2.robjects import packages rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) __________ ERROR collecting rpy2/tests/robjects/lib/test_grdevices.py __________ rpy2/tests/robjects/lib/test_grdevices.py:6: in from rpy2.robjects.packages import importr, data rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ____________ ERROR collecting rpy2/tests/robjects/lib/test_grid.py _____________ rpy2/tests/robjects/lib/test_grid.py:7: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ____________ ERROR collecting rpy2/tests/robjects/lib/test_tidyr.py ____________ rpy2/tests/robjects/lib/test_tidyr.py:3: in from rpy2.robjects import packages rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ______________ ERROR collecting rpy2/tests/robjects/test_array.py ______________ rpy2/tests/robjects/test_array.py:2: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ___________ ERROR collecting rpy2/tests/robjects/test_conversion.py ____________ rpy2/tests/robjects/test_conversion.py:5: in from rpy2 import robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ________ ERROR collecting rpy2/tests/robjects/test_conversion_numpy.py _________ rpy2/tests/robjects/test_conversion_numpy.py:3: in from rpy2 import robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ____________ ERROR collecting rpy2/tests/robjects/test_dataframe.py ____________ rpy2/tests/robjects/test_dataframe.py:2: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ___________ ERROR collecting rpy2/tests/robjects/test_environment.py ___________ rpy2/tests/robjects/test_environment.py:2: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) _____________ ERROR collecting rpy2/tests/robjects/test_formula.py _____________ rpy2/tests/robjects/test_formula.py:2: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ____________ ERROR collecting rpy2/tests/robjects/test_function.py _____________ rpy2/tests/robjects/test_function.py:3: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ______________ ERROR collecting rpy2/tests/robjects/test_help.py _______________ rpy2/tests/robjects/test_help.py:3: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ____________ ERROR collecting rpy2/tests/robjects/test_language.py _____________ rpy2/tests/robjects/test_language.py:2: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) _____________ ERROR collecting rpy2/tests/robjects/test_methods.py _____________ rpy2/tests/robjects/test_methods.py:4: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ____________ ERROR collecting rpy2/tests/robjects/test_packages.py _____________ rpy2/tests/robjects/test_packages.py:5: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) _________ ERROR collecting rpy2/tests/robjects/test_packages_utils.py __________ rpy2/tests/robjects/test_packages_utils.py:2: in import rpy2.robjects.packages_utils as p_u rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) _______ ERROR collecting rpy2/tests/robjects/test_pandas_conversions.py ________ rpy2/tests/robjects/test_pandas_conversions.py:8: in from rpy2 import robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ____________ ERROR collecting rpy2/tests/robjects/test_robjects.py _____________ rpy2/tests/robjects/test_robjects.py:3: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) _______________ ERROR collecting rpy2/tests/robjects/test_rs4.py _______________ rpy2/tests/robjects/test_rs4.py:2: in from rpy2 import robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) __________ ERROR collecting rpy2/tests/robjects/test_serialization.py __________ rpy2/tests/robjects/test_serialization.py:5: in from rpy2 import robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) _______ ERROR collecting rpy2/tests/robjects/test_translated_function.py _______ rpy2/tests/robjects/test_translated_function.py:3: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) _____________ ERROR collecting rpy2/tests/robjects/test_vector.py ______________ rpy2/tests/robjects/test_vector.py:2: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) _________ ERROR collecting rpy2/tests/robjects/test_vector_datetime.py _________ rpy2/tests/robjects/test_vector_datetime.py:9: in from rpy2 import robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) _____ ERROR collecting rpy2/tests/robjects/test_vector_extractdelegator.py _____ rpy2/tests/robjects/test_vector_extractdelegator.py:6: in from rpy2 import robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) __________ ERROR collecting rpy2/tests/robjects/test_vector_factor.py __________ rpy2/tests/robjects/test_vector_factor.py:3: in from rpy2 import robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) =============================== warnings summary =============================== rpy2/rinterface.py:1189 rpy2/rinterface.py:1189 /home/buildozer/aports/community/py3-rpy2/src/rpy2-3.5.17/rpy2/rinterface.py:1189: UserWarning: Environment variable "LD_LIBRARY_PATH" redefined by R and overriding existing variable. warnings.warn( rpy2/rinterface.py:1189 rpy2/rinterface.py:1189 /home/buildozer/aports/community/py3-rpy2/src/rpy2-3.5.17/rpy2/rinterface.py:1189: UserWarning: Environment variable "SHLVL" redefined by R and overriding existing variable. warnings.warn( rpy2/rinterface.py:1189 rpy2/rinterface.py:1189 /home/buildozer/aports/community/py3-rpy2/src/rpy2-3.5.17/rpy2/rinterface.py:1189: UserWarning: Environment variable "R_SESSION_TMPDIR" redefined by R and overriding existing variable. warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ ERROR rpy2/tests/ipython/test_ggplot.py - rpy2.rinterface_lib.embedded.RRunti... ERROR rpy2/tests/ipython/test_html.py - rpy2.rinterface_lib.embedded.RRuntime... ERROR rpy2/tests/ipython/test_rmagic.py - rpy2.rinterface_lib.embedded.RRunti... ERROR rpy2/tests/robjects/lib/test_dbplyr.py - rpy2.rinterface_lib.embedded.R... ERROR rpy2/tests/robjects/lib/test_dplyr.py - rpy2.rinterface_lib.embedded.RR... ERROR rpy2/tests/robjects/lib/test_ggplot2.py - rpy2.rinterface_lib.embedded.... ERROR rpy2/tests/robjects/lib/test_grdevices.py - rpy2.rinterface_lib.embedde... ERROR rpy2/tests/robjects/lib/test_grid.py - rpy2.rinterface_lib.embedded.RRu... ERROR rpy2/tests/robjects/lib/test_tidyr.py - rpy2.rinterface_lib.embedded.RR... ERROR rpy2/tests/robjects/test_array.py - rpy2.rinterface_lib.embedded.RRunti... ERROR rpy2/tests/robjects/test_conversion.py - rpy2.rinterface_lib.embedded.R... ERROR rpy2/tests/robjects/test_conversion_numpy.py - rpy2.rinterface_lib.embe... ERROR rpy2/tests/robjects/test_dataframe.py - rpy2.rinterface_lib.embedded.RR... ERROR rpy2/tests/robjects/test_environment.py - rpy2.rinterface_lib.embedded.... ERROR rpy2/tests/robjects/test_formula.py - rpy2.rinterface_lib.embedded.RRun... ERROR rpy2/tests/robjects/test_function.py - rpy2.rinterface_lib.embedded.RRu... ERROR rpy2/tests/robjects/test_help.py - rpy2.rinterface_lib.embedded.RRuntim... ERROR rpy2/tests/robjects/test_language.py - rpy2.rinterface_lib.embedded.RRu... ERROR rpy2/tests/robjects/test_methods.py - rpy2.rinterface_lib.embedded.RRun... ERROR rpy2/tests/robjects/test_packages.py - rpy2.rinterface_lib.embedded.RRu... ERROR rpy2/tests/robjects/test_packages_utils.py - rpy2.rinterface_lib.embedd... ERROR rpy2/tests/robjects/test_pandas_conversions.py - rpy2.rinterface_lib.em... ERROR rpy2/tests/robjects/test_robjects.py - rpy2.rinterface_lib.embedded.RRu... ERROR rpy2/tests/robjects/test_rs4.py - rpy2.rinterface_lib.embedded.RRuntime... ERROR rpy2/tests/robjects/test_serialization.py - rpy2.rinterface_lib.embedde... ERROR rpy2/tests/robjects/test_translated_function.py - rpy2.rinterface_lib.e... ERROR rpy2/tests/robjects/test_vector.py - rpy2.rinterface_lib.embedded.RRunt... ERROR rpy2/tests/robjects/test_vector_datetime.py - rpy2.rinterface_lib.embed... ERROR rpy2/tests/robjects/test_vector_extractdelegator.py - rpy2.rinterface_l... ERROR rpy2/tests/robjects/test_vector_factor.py - rpy2.rinterface_lib.embedde... !!!!!!!!!!!!!!!!!!! Interrupted: 30 errors during collection !!!!!!!!!!!!!!!!!!! ================= 1 deselected, 6 warnings, 30 errors in 6.70s ================= >>> ERROR: py3-rpy2: check failed >>> py3-rpy2: Uninstalling dependencies... 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