>>> py3-biopython: Building community/py3-biopython 1.85-r0 (using abuild 3.15.0_rc3-r1) started Tue, 29 Apr 2025 19:25:17 +0000
>>> py3-biopython: Validating /home/buildozer/aports/community/py3-biopython/APKBUILD...
>>> WARNING: py3-biopython: No maintainer
>>> py3-biopython: Analyzing dependencies...
>>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev
(1/32) Installing libquadmath (14.2.0-r5)
(2/32) Installing libgfortran (14.2.0-r5)
(3/32) Installing openblas (0.3.28-r0)
(4/32) Installing libbz2 (1.0.8-r6)
(5/32) Installing libffi (3.4.8-r0)
(6/32) Installing gdbm (1.24-r0)
(7/32) Installing xz-libs (5.8.1-r0)
(8/32) Installing mpdecimal (4.0.0-r0)
(9/32) Installing libpanelw (6.5_p20250412-r0)
(10/32) Installing sqlite-libs (3.49.1-r1)
(11/32) Installing python3 (3.12.10-r0)
(12/32) Installing python3-pycache-pyc0 (3.12.10-r0)
(13/32) Installing pyc (3.12.10-r0)
(14/32) Installing py3-numpy-pyc (2.2.4-r0)
(15/32) Installing python3-pyc (3.12.10-r0)
(16/32) Installing py3-numpy (2.2.4-r0)
(17/32) Installing py3-numpy-tests (2.2.4-r0)
(18/32) Installing py3-installer (0.7.0-r2)
(19/32) Installing py3-installer-pyc (0.7.0-r2)
(20/32) Installing py3-gpep517 (16-r0)
(21/32) Installing py3-gpep517-pyc (16-r0)
(22/32) Installing py3-parsing (3.2.0-r0)
(23/32) Installing py3-parsing-pyc (3.2.0-r0)
(24/32) Installing py3-packaging (25.0-r0)
(25/32) Installing py3-packaging-pyc (25.0-r0)
(26/32) Installing py3-setuptools (77.0.3-r0)
(27/32) Installing py3-setuptools-pyc (77.0.3-r0)
(28/32) Installing py3-wheel (0.43.0-r0)
(29/32) Installing py3-wheel-pyc (0.43.0-r0)
(30/32) Installing py3-numpy-dev (2.2.4-r0)
(31/32) Installing python3-dev (3.12.10-r0)
(32/32) Installing .makedepends-py3-biopython (20250429.192518)
Executing busybox-1.37.0-r16.trigger
OK: 562 MiB in 135 packages
>>> py3-biopython: Cleaning up srcdir
>>> py3-biopython: Cleaning up pkgdir
>>> py3-biopython: Cleaning up tmpdir
>>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/v3.22/biopython-1.85.tar.gz
Connecting to distfiles.alpinelinux.org (172.105.82.32:443)
saving to '/var/cache/distfiles/v3.22/biopython-1.85.tar.gz.part'
biopython-1.85.tar.g 100% |********************************| 18.9M  0:00:00 ETA
'/var/cache/distfiles/v3.22/biopython-1.85.tar.gz.part' saved
>>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/v3.22/biopython-1.85.tar.gz
>>> py3-biopython: Checking sha512sums...
biopython-1.85.tar.gz: OK
>>> py3-biopython: Unpacking /var/cache/distfiles/v3.22/biopython-1.85.tar.gz...
2025-04-29 19:25:20,973 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__
/usr/lib/python3.12/site-packages/setuptools/dist.py:760: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!

        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:

        License :: Freely Distributable

        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************

!!
  self._finalize_license_expression()
2025-04-29 19:25:20,996 root INFO running bdist_wheel
2025-04-29 19:25:21,011 root INFO running build
2025-04-29 19:25:21,011 root INFO running build_py
2025-04-29 19:25:21,015 root INFO creating build/lib.linux-x86_64-cpython-312/Bio
2025-04-29 19:25:21,015 root INFO copying Bio/File.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-29 19:25:21,015 root INFO copying Bio/MaxEntropy.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-29 19:25:21,016 root INFO copying Bio/_utils.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-29 19:25:21,016 root INFO copying Bio/pairwise2.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-29 19:25:21,016 root INFO copying Bio/kNN.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-29 19:25:21,017 root INFO copying Bio/Seq.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-29 19:25:21,017 root INFO copying Bio/bgzf.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-29 19:25:21,018 root INFO copying Bio/NaiveBayes.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-29 19:25:21,018 root INFO copying Bio/SeqFeature.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-29 19:25:21,018 root INFO copying Bio/MarkovModel.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-29 19:25:21,018 root INFO copying Bio/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-29 19:25:21,019 root INFO copying Bio/LogisticRegression.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-29 19:25:21,019 root INFO copying Bio/SeqRecord.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-29 19:25:21,020 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Affy
2025-04-29 19:25:21,020 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-x86_64-cpython-312/Bio/Affy
2025-04-29 19:25:21,020 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Affy
2025-04-29 19:25:21,021 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,021 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,021 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,022 root INFO copying Bio/Align/psl.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,022 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,022 root INFO copying Bio/Align/bed.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,022 root INFO copying Bio/Align/a2m.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,023 root INFO copying Bio/Align/mauve.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,023 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,023 root INFO copying Bio/Align/sam.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,024 root INFO copying Bio/Align/msf.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,024 root INFO copying Bio/Align/nexus.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,024 root INFO copying Bio/Align/phylip.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,024 root INFO copying Bio/Align/clustal.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,025 root INFO copying Bio/Align/emboss.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,025 root INFO copying Bio/Align/maf.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,025 root INFO copying Bio/Align/analysis.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,025 root INFO copying Bio/Align/chain.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,026 root INFO copying Bio/Align/tabular.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,026 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,026 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,027 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,027 root INFO copying Bio/Align/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,027 root INFO copying Bio/Align/hhr.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,028 root INFO copying Bio/Align/fasta.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,028 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Align/Applications
2025-04-29 19:25:21,028 root INFO copying Bio/Align/Applications/_Prank.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications
2025-04-29 19:25:21,028 root INFO copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications
2025-04-29 19:25:21,029 root INFO copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications
2025-04-29 19:25:21,029 root INFO copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications
2025-04-29 19:25:21,029 root INFO copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications
2025-04-29 19:25:21,030 root INFO copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications
2025-04-29 19:25:21,030 root INFO copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications
2025-04-29 19:25:21,030 root INFO copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications
2025-04-29 19:25:21,030 root INFO copying Bio/Align/Applications/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications
2025-04-29 19:25:21,031 root INFO copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications
2025-04-29 19:25:21,031 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices
2025-04-29 19:25:21,031 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices
2025-04-29 19:25:21,031 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/AlignIO
2025-04-29 19:25:21,032 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO
2025-04-29 19:25:21,032 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO
2025-04-29 19:25:21,032 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO
2025-04-29 19:25:21,032 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO
2025-04-29 19:25:21,033 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO
2025-04-29 19:25:21,033 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO
2025-04-29 19:25:21,033 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO
2025-04-29 19:25:21,034 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO
2025-04-29 19:25:21,034 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO
2025-04-29 19:25:21,034 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO
2025-04-29 19:25:21,034 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO
2025-04-29 19:25:21,035 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Alphabet
2025-04-29 19:25:21,035 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Alphabet
2025-04-29 19:25:21,035 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Application
2025-04-29 19:25:21,035 root INFO copying Bio/Application/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Application
2025-04-29 19:25:21,036 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Blast
2025-04-29 19:25:21,036 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast
2025-04-29 19:25:21,036 root INFO copying Bio/Blast/Applications.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast
2025-04-29 19:25:21,037 root INFO copying Bio/Blast/_writers.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast
2025-04-29 19:25:21,037 root INFO copying Bio/Blast/_parser.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast
2025-04-29 19:25:21,037 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast
2025-04-29 19:25:21,038 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast
2025-04-29 19:25:21,038 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/CAPS
2025-04-29 19:25:21,038 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/CAPS
2025-04-29 19:25:21,038 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Cluster
2025-04-29 19:25:21,039 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Cluster
2025-04-29 19:25:21,039 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/codonalign
2025-04-29 19:25:21,039 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-x86_64-cpython-312/Bio/codonalign
2025-04-29 19:25:21,039 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-x86_64-cpython-312/Bio/codonalign
2025-04-29 19:25:21,040 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/codonalign
2025-04-29 19:25:21,040 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Compass
2025-04-29 19:25:21,040 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Compass
2025-04-29 19:25:21,041 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Data
2025-04-29 19:25:21,041 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-x86_64-cpython-312/Bio/Data
2025-04-29 19:25:21,041 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-x86_64-cpython-312/Bio/Data
2025-04-29 19:25:21,041 root INFO copying Bio/Data/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Data
2025-04-29 19:25:21,042 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-x86_64-cpython-312/Bio/Data
2025-04-29 19:25:21,042 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Emboss
2025-04-29 19:25:21,042 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-x86_64-cpython-312/Bio/Emboss
2025-04-29 19:25:21,042 root INFO copying Bio/Emboss/Applications.py -> build/lib.linux-x86_64-cpython-312/Bio/Emboss
2025-04-29 19:25:21,043 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-x86_64-cpython-312/Bio/Emboss
2025-04-29 19:25:21,043 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Emboss
2025-04-29 19:25:21,043 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Entrez
2025-04-29 19:25:21,043 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-x86_64-cpython-312/Bio/Entrez
2025-04-29 19:25:21,044 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Entrez
2025-04-29 19:25:21,044 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/ExPASy
2025-04-29 19:25:21,044 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy
2025-04-29 19:25:21,045 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy
2025-04-29 19:25:21,045 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy
2025-04-29 19:25:21,045 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy
2025-04-29 19:25:21,045 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy
2025-04-29 19:25:21,046 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy
2025-04-29 19:25:21,046 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/GenBank
2025-04-29 19:25:21,046 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-x86_64-cpython-312/Bio/GenBank
2025-04-29 19:25:21,047 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-x86_64-cpython-312/Bio/GenBank
2025-04-29 19:25:21,047 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-x86_64-cpython-312/Bio/GenBank
2025-04-29 19:25:21,047 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/GenBank
2025-04-29 19:25:21,047 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Geo
2025-04-29 19:25:21,048 root INFO copying Bio/Geo/Record.py -> build/lib.linux-x86_64-cpython-312/Bio/Geo
2025-04-29 19:25:21,048 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Geo
2025-04-29 19:25:21,048 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Graphics
2025-04-29 19:25:21,048 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics
2025-04-29 19:25:21,049 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics
2025-04-29 19:25:21,049 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics
2025-04-29 19:25:21,049 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics
2025-04-29 19:25:21,050 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics
2025-04-29 19:25:21,050 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics
2025-04-29 19:25:21,050 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics
2025-04-29 19:25:21,050 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-29 19:25:21,051 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-29 19:25:21,051 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-29 19:25:21,051 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-29 19:25:21,051 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-29 19:25:21,052 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-29 19:25:21,052 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-29 19:25:21,052 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-29 19:25:21,053 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-29 19:25:21,053 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-29 19:25:21,053 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-29 19:25:21,053 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-29 19:25:21,054 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-29 19:25:21,054 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/HMM
2025-04-29 19:25:21,054 root INFO copying Bio/HMM/Trainer.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM
2025-04-29 19:25:21,055 root INFO copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM
2025-04-29 19:25:21,055 root INFO copying Bio/HMM/MarkovModel.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM
2025-04-29 19:25:21,055 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM
2025-04-29 19:25:21,055 root INFO copying Bio/HMM/Utilities.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM
2025-04-29 19:25:21,056 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG
2025-04-29 19:25:21,056 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG
2025-04-29 19:25:21,056 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG
2025-04-29 19:25:21,056 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/Compound
2025-04-29 19:25:21,057 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/Compound
2025-04-29 19:25:21,057 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/Enzyme
2025-04-29 19:25:21,057 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/Enzyme
2025-04-29 19:25:21,057 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/Gene
2025-04-29 19:25:21,058 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/Gene
2025-04-29 19:25:21,058 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/Map
2025-04-29 19:25:21,058 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/Map
2025-04-29 19:25:21,058 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf
2025-04-29 19:25:21,059 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf
2025-04-29 19:25:21,059 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf
2025-04-29 19:25:21,059 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf
2025-04-29 19:25:21,060 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML
2025-04-29 19:25:21,060 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML
2025-04-29 19:25:21,060 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML
2025-04-29 19:25:21,060 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML
2025-04-29 19:25:21,061 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Medline
2025-04-29 19:25:21,061 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Medline
2025-04-29 19:25:21,061 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-29 19:25:21,061 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-29 19:25:21,062 root INFO copying Bio/motifs/meme.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-29 19:25:21,062 root INFO copying Bio/motifs/mast.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-29 19:25:21,062 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-29 19:25:21,062 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-29 19:25:21,063 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-29 19:25:21,063 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-29 19:25:21,063 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-29 19:25:21,063 root INFO copying Bio/motifs/xms.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-29 19:25:21,064 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-29 19:25:21,064 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-29 19:25:21,064 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/motifs/applications
2025-04-29 19:25:21,065 root INFO copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs/applications
2025-04-29 19:25:21,065 root INFO copying Bio/motifs/applications/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs/applications
2025-04-29 19:25:21,065 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar
2025-04-29 19:25:21,065 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar
2025-04-29 19:25:21,066 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar
2025-04-29 19:25:21,066 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Nexus
2025-04-29 19:25:21,066 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus
2025-04-29 19:25:21,067 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus
2025-04-29 19:25:21,067 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus
2025-04-29 19:25:21,067 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus
2025-04-29 19:25:21,067 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus
2025-04-29 19:25:21,068 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/NMR
2025-04-29 19:25:21,068 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-x86_64-cpython-312/Bio/NMR
2025-04-29 19:25:21,068 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/NMR
2025-04-29 19:25:21,068 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-x86_64-cpython-312/Bio/NMR
2025-04-29 19:25:21,069 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Pathway
2025-04-29 19:25:21,069 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Pathway
2025-04-29 19:25:21,069 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep
2025-04-29 19:25:21,069 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep
2025-04-29 19:25:21,070 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep
2025-04-29 19:25:21,070 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep
2025-04-29 19:25:21,071 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,071 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,071 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,072 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,072 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,072 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,072 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,073 root INFO copying Bio/PDB/Model.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,073 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,073 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,073 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,074 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,074 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,074 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,075 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,075 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,075 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,075 root INFO copying Bio/PDB/PDBMLParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,076 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,076 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,076 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,077 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,077 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,077 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,077 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,078 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,078 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,078 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,079 root INFO copying Bio/PDB/alphafold_db.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,079 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,079 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,079 root INFO copying Bio/PDB/binary_cif.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,080 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,080 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,080 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,080 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,081 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,081 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,081 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,082 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,082 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,082 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/phenotype
2025-04-29 19:25:21,082 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-x86_64-cpython-312/Bio/phenotype
2025-04-29 19:25:21,083 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-x86_64-cpython-312/Bio/phenotype
2025-04-29 19:25:21,083 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/phenotype
2025-04-29 19:25:21,083 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/PopGen
2025-04-29 19:25:21,083 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen
2025-04-29 19:25:21,084 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop
2025-04-29 19:25:21,084 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop
2025-04-29 19:25:21,084 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop
2025-04-29 19:25:21,085 root INFO copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop
2025-04-29 19:25:21,085 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop
2025-04-29 19:25:21,085 root INFO copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop
2025-04-29 19:25:21,086 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Restriction
2025-04-29 19:25:21,086 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-x86_64-cpython-312/Bio/Restriction
2025-04-29 19:25:21,087 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-x86_64-cpython-312/Bio/Restriction
2025-04-29 19:25:21,087 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-x86_64-cpython-312/Bio/Restriction
2025-04-29 19:25:21,087 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Restriction
2025-04-29 19:25:21,088 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SCOP
2025-04-29 19:25:21,088 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP
2025-04-29 19:25:21,088 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP
2025-04-29 19:25:21,088 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP
2025-04-29 19:25:21,088 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP
2025-04-29 19:25:21,089 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP
2025-04-29 19:25:21,089 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP
2025-04-29 19:25:21,089 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP
2025-04-29 19:25:21,090 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO
2025-04-29 19:25:21,090 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO
2025-04-29 19:25:21,090 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO
2025-04-29 19:25:21,090 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO
2025-04-29 19:25:21,091 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO
2025-04-29 19:25:21,091 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO
2025-04-29 19:25:21,091 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model
2025-04-29 19:25:21,092 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model
2025-04-29 19:25:21,092 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model
2025-04-29 19:25:21,092 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model
2025-04-29 19:25:21,092 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model
2025-04-29 19:25:21,093 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model
2025-04-29 19:25:21,093 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO
2025-04-29 19:25:21,093 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO
2025-04-29 19:25:21,093 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO
2025-04-29 19:25:21,094 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO
2025-04-29 19:25:21,094 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO
2025-04-29 19:25:21,094 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO
2025-04-29 19:25:21,095 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO
2025-04-29 19:25:21,095 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO
2025-04-29 19:25:21,095 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO
2025-04-29 19:25:21,095 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO
2025-04-29 19:25:21,096 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO
2025-04-29 19:25:21,096 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO
2025-04-29 19:25:21,096 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO
2025-04-29 19:25:21,096 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO
2025-04-29 19:25:21,097 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO
2025-04-29 19:25:21,097 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO
2025-04-29 19:25:21,097 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO
2025-04-29 19:25:21,098 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO
2025-04-29 19:25:21,098 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO
2025-04-29 19:25:21,098 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO
2025-04-29 19:25:21,098 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO
2025-04-29 19:25:21,099 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO
2025-04-29 19:25:21,099 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO
2025-04-29 19:25:21,099 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,100 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,100 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,100 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,100 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,101 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,101 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,101 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,102 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,102 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,102 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,102 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,103 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,103 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,103 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,104 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,104 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,104 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,104 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,105 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,105 root INFO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,105 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,105 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,106 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,106 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SeqUtils
2025-04-29 19:25:21,106 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils
2025-04-29 19:25:21,107 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils
2025-04-29 19:25:21,107 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils
2025-04-29 19:25:21,107 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils
2025-04-29 19:25:21,107 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils
2025-04-29 19:25:21,108 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils
2025-04-29 19:25:21,108 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils
2025-04-29 19:25:21,108 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Sequencing
2025-04-29 19:25:21,109 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing
2025-04-29 19:25:21,109 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing
2025-04-29 19:25:21,109 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing
2025-04-29 19:25:21,109 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications
2025-04-29 19:25:21,110 root INFO copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications
2025-04-29 19:25:21,110 root INFO copying Bio/Sequencing/Applications/_bwa.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications
2025-04-29 19:25:21,110 root INFO copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications
2025-04-29 19:25:21,110 root INFO copying Bio/Sequencing/Applications/_samtools.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications
2025-04-29 19:25:21,111 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SVDSuperimposer
2025-04-29 19:25:21,111 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SVDSuperimposer
2025-04-29 19:25:21,111 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SwissProt
2025-04-29 19:25:21,111 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SwissProt
2025-04-29 19:25:21,112 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-x86_64-cpython-312/Bio/SwissProt
2025-04-29 19:25:21,112 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/TogoWS
2025-04-29 19:25:21,112 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/TogoWS
2025-04-29 19:25:21,113 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-29 19:25:21,113 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-29 19:25:21,113 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-29 19:25:21,113 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-29 19:25:21,114 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-29 19:25:21,114 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-29 19:25:21,114 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-29 19:25:21,115 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-29 19:25:21,115 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-29 19:25:21,115 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-29 19:25:21,116 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-29 19:25:21,116 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-29 19:25:21,116 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-29 19:25:21,116 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-29 19:25:21,117 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-29 19:25:21,117 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-29 19:25:21,117 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-29 19:25:21,117 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications
2025-04-29 19:25:21,118 root INFO copying Bio/Phylo/Applications/_Raxml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications
2025-04-29 19:25:21,118 root INFO copying Bio/Phylo/Applications/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications
2025-04-29 19:25:21,118 root INFO copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications
2025-04-29 19:25:21,119 root INFO copying Bio/Phylo/Applications/_Phyml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications
2025-04-29 19:25:21,119 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML
2025-04-29 19:25:21,119 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML
2025-04-29 19:25:21,119 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML
2025-04-29 19:25:21,120 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML
2025-04-29 19:25:21,120 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML
2025-04-29 19:25:21,120 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML
2025-04-29 19:25:21,120 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML
2025-04-29 19:25:21,121 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML
2025-04-29 19:25:21,121 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML
2025-04-29 19:25:21,121 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML
2025-04-29 19:25:21,122 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/UniGene
2025-04-29 19:25:21,122 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/UniGene
2025-04-29 19:25:21,122 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/UniProt
2025-04-29 19:25:21,122 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-x86_64-cpython-312/Bio/UniProt
2025-04-29 19:25:21,122 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/UniProt
2025-04-29 19:25:21,123 root INFO creating build/lib.linux-x86_64-cpython-312/BioSQL
2025-04-29 19:25:21,123 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-x86_64-cpython-312/BioSQL
2025-04-29 19:25:21,123 root INFO copying BioSQL/Loader.py -> build/lib.linux-x86_64-cpython-312/BioSQL
2025-04-29 19:25:21,124 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-x86_64-cpython-312/BioSQL
2025-04-29 19:25:21,124 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-x86_64-cpython-312/BioSQL
2025-04-29 19:25:21,124 root INFO copying BioSQL/__init__.py -> build/lib.linux-x86_64-cpython-312/BioSQL
2025-04-29 19:25:21,124 root INFO running egg_info
2025-04-29 19:25:21,127 root INFO writing biopython.egg-info/PKG-INFO
2025-04-29 19:25:21,128 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt
2025-04-29 19:25:21,128 root INFO writing requirements to biopython.egg-info/requires.txt
2025-04-29 19:25:21,128 root INFO writing top-level names to biopython.egg-info/top_level.txt
2025-04-29 19:25:21,145 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt'
2025-04-29 19:25:21,184 root INFO reading manifest template 'MANIFEST.in'
2025-04-29 19:25:21,252 root WARNING warning: no previously-included files found matching 'Doc/_build'
2025-04-29 19:25:21,257 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip'
2025-04-29 19:25:21,259 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution
2025-04-29 19:25:21,261 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution
2025-04-29 19:25:21,264 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution
2025-04-29 19:25:21,266 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution
2025-04-29 19:25:21,272 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt'
2025-04-29 19:25:21,272 root INFO adding license file 'LICENSE'
2025-04-29 19:25:21,272 root INFO adding license file 'LICENSE.rst'
2025-04-29 19:25:21,303 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt'
/usr/lib/python3.12/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are
        already explicitly excluding 'Bio.Align.substitution_matrices.data' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
/usr/lib/python3.12/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'Bio.Entrez.DTDs' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'Bio.Entrez.DTDs' to be distributed and are
        already explicitly excluding 'Bio.Entrez.DTDs' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
/usr/lib/python3.12/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'Bio.Entrez.XSDs' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'Bio.Entrez.XSDs' to be distributed and are
        already explicitly excluding 'Bio.Entrez.XSDs' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
2025-04-29 19:25:21,330 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-29 19:25:21,330 root INFO copying Bio/py.typed -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-29 19:25:21,331 root INFO copying Bio/Align/_aligncore.c -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,331 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,331 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,332 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,332 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,332 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,332 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,333 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,333 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,333 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,334 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,334 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,334 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,334 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,335 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,335 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,335 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,335 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,336 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,336 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,336 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,336 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,337 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,337 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,337 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,338 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,338 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,338 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,338 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,339 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,339 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,339 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,340 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,340 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-29 19:25:21,340 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-x86_64-cpython-312/Bio/Cluster
2025-04-29 19:25:21,341 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-x86_64-cpython-312/Bio/Cluster
2025-04-29 19:25:21,341 root INFO copying Bio/Cluster/clustermodule.c -> build/lib.linux-x86_64-cpython-312/Bio/Cluster
2025-04-29 19:25:21,341 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,341 root INFO copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,342 root INFO copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,342 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,342 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,342 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,343 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,343 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,343 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,344 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,344 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,344 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,344 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,345 root INFO copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,345 root INFO copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,345 root INFO copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,345 root INFO copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,346 root INFO copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,346 root INFO copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,346 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,347 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,347 root INFO copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,347 root INFO copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,347 root INFO copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,348 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,348 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,348 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,349 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,349 root INFO copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,349 root INFO copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,350 root INFO copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,350 root INFO copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,350 root INFO copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,351 root INFO copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,351 root INFO copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,351 root INFO copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,352 root INFO copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,352 root INFO copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,352 root INFO copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,353 root INFO copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,353 root INFO copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,353 root INFO copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,354 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,354 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,354 root INFO copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,355 root INFO copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,355 root INFO copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,355 root INFO copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,355 root INFO copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,356 root INFO copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,356 root INFO copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,356 root INFO copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,357 root INFO copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,357 root INFO copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,357 root INFO copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,357 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,358 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,358 root INFO copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,358 root INFO copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,359 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,359 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,359 root INFO copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,360 root INFO copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,360 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,360 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,360 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,361 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,361 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,361 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,361 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,362 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,362 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,362 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,363 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,363 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,363 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,363 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,364 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,364 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,364 root INFO copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,364 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,365 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,365 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,365 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,366 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,366 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,366 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,366 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,367 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,367 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,367 root INFO copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,367 root INFO copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,368 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,368 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,368 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,369 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,369 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,369 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,369 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,370 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,370 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,370 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,370 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,371 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,371 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,371 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,372 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,372 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,372 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,372 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,373 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,373 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,373 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,374 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,374 root INFO copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,374 root INFO copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,374 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,375 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,375 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,375 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,375 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,376 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,376 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,376 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,376 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,377 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,377 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,377 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,378 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,378 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,378 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,378 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,379 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,379 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,379 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,380 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,380 root INFO copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,380 root INFO copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,380 root INFO copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,381 root INFO copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,381 root INFO copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,381 root INFO copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,382 root INFO copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,382 root INFO copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,382 root INFO copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,382 root INFO copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,383 root INFO copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,383 root INFO copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,383 root INFO copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,383 root INFO copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,384 root INFO copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,384 root INFO copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,384 root INFO copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,385 root INFO copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,385 root INFO copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,385 root INFO copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,385 root INFO copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,386 root INFO copying Bio/Entrez/DTDs/NCBI_all.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,386 root INFO copying Bio/Entrez/DTDs/NSE.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,386 root INFO copying Bio/Entrez/DTDs/NSE.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,386 root INFO copying Bio/Entrez/DTDs/OMSSA.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,387 root INFO copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,387 root INFO copying Bio/Entrez/DTDs/PDB_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,387 root INFO copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,388 root INFO copying Bio/Entrez/DTDs/PIR_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,388 root INFO copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,388 root INFO copying Bio/Entrez/DTDs/PRF_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,388 root INFO copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,389 root INFO copying Bio/Entrez/DTDs/SP_General.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,389 root INFO copying Bio/Entrez/DTDs/SP_General.mod.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,389 root INFO copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,389 root INFO copying Bio/Entrez/DTDs/archivearticle.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,390 root INFO copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,390 root INFO copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,390 root INFO copying Bio/Entrez/DTDs/archivecustom-models.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,391 root INFO copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,391 root INFO copying Bio/Entrez/DTDs/articlemeta.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,391 root INFO copying Bio/Entrez/DTDs/backmatter.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,392 root INFO copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,392 root INFO copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,392 root INFO copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,392 root INFO copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,393 root INFO copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,393 root INFO copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,393 root INFO copying Bio/Entrez/DTDs/chars.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,394 root INFO copying Bio/Entrez/DTDs/common.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,394 root INFO copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,395 root INFO copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,395 root INFO copying Bio/Entrez/DTDs/display.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,395 root INFO copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,396 root INFO copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,396 root INFO copying Bio/Entrez/DTDs/eLink_101123.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,396 root INFO copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,396 root INFO copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,397 root INFO copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,397 root INFO copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,397 root INFO copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,398 root INFO copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,398 root INFO copying Bio/Entrez/DTDs/elink.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,398 root INFO copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,398 root INFO copying Bio/Entrez/DTDs/epost.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,399 root INFO copying Bio/Entrez/DTDs/esearch.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,399 root INFO copying Bio/Entrez/DTDs/esummary-v1.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,399 root INFO copying Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,399 root INFO copying Bio/Entrez/DTDs/esummary_gene.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,400 root INFO copying Bio/Entrez/DTDs/format.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,400 root INFO copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,400 root INFO copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,401 root INFO copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,401 root INFO copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,401 root INFO copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,401 root INFO copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,402 root INFO copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,402 root INFO copying Bio/Entrez/DTDs/isobox.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,402 root INFO copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,403 root INFO copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,403 root INFO copying Bio/Entrez/DTDs/isodia.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,403 root INFO copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,403 root INFO copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,404 root INFO copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,404 root INFO copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,404 root INFO copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,404 root INFO copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,405 root INFO copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,405 root INFO copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,405 root INFO copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,405 root INFO copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,406 root INFO copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,406 root INFO copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,406 root INFO copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,407 root INFO copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,407 root INFO copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,407 root INFO copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,407 root INFO copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,408 root INFO copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,408 root INFO copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,408 root INFO copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,409 root INFO copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,409 root INFO copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,409 root INFO copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,410 root INFO copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,410 root INFO copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,410 root INFO copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,411 root INFO copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,411 root INFO copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,411 root INFO copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,411 root INFO copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,412 root INFO copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,412 root INFO copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,412 root INFO copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,412 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,413 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,413 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,413 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,414 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,414 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,414 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,414 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,415 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,415 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,415 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,416 root INFO copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,416 root INFO copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,416 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,416 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,417 root INFO copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,417 root INFO copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,417 root INFO copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,417 root INFO copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,418 root INFO copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,418 root INFO copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,418 root INFO copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,419 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,419 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,419 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,419 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,420 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,420 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,420 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,421 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,421 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,421 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,421 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,422 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,422 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,422 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,423 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,423 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,423 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-29 19:25:21,423 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs
2025-04-29 19:25:21,424 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs
2025-04-29 19:25:21,424 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs
2025-04-29 19:25:21,424 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs
2025-04-29 19:25:21,424 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-29 19:25:21,425 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-x86_64-cpython-312/Bio/Nexus
2025-04-29 19:25:21,425 root INFO copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,425 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,425 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:21,426 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:21,426 root INFO copying BioSQL/py.typed -> build/lib.linux-x86_64-cpython-312/BioSQL
2025-04-29 19:25:21,432 root INFO running build_ext
2025-04-29 19:25:21,434 root INFO building 'Bio.Align._codonaligner' extension
2025-04-29 19:25:21,434 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/Align
2025-04-29 19:25:21,435 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Align/_codonaligner.c -o build/temp.linux-x86_64-cpython-312/Bio/Align/_codonaligner.o
2025-04-29 19:25:21,979 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/Align/_codonaligner.cpython-312-x86_64-linux-musl.so
2025-04-29 19:25:21,998 root INFO building 'Bio.Align._pairwisealigner' extension
2025-04-29 19:25:21,999 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.o
2025-04-29 19:25:28,580 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-x86_64-linux-musl.so
2025-04-29 19:25:28,595 root INFO building 'Bio.Align._aligncore' extension
2025-04-29 19:25:28,595 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Align/_aligncore.c -o build/temp.linux-x86_64-cpython-312/Bio/Align/_aligncore.o
2025-04-29 19:25:28,849 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/Align/_aligncore.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/Align/_aligncore.cpython-312-x86_64-linux-musl.so
2025-04-29 19:25:28,866 root INFO building 'Bio.cpairwise2' extension
2025-04-29 19:25:28,867 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.linux-x86_64-cpython-312/Bio/cpairwise2module.o
2025-04-29 19:25:29,193 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/cpairwise2.cpython-312-x86_64-linux-musl.so
2025-04-29 19:25:29,211 root INFO building 'Bio.Nexus.cnexus' extension
2025-04-29 19:25:29,212 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/Nexus
2025-04-29 19:25:29,212 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.linux-x86_64-cpython-312/Bio/Nexus/cnexus.o
2025-04-29 19:25:29,372 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/Nexus/cnexus.cpython-312-x86_64-linux-musl.so
2025-04-29 19:25:29,389 root INFO building 'Bio.motifs._pwm' extension
2025-04-29 19:25:29,390 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/motifs
2025-04-29 19:25:29,390 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.linux-x86_64-cpython-312/Bio/motifs/_pwm.o
2025-04-29 19:25:29,558 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/motifs/_pwm.cpython-312-x86_64-linux-musl.so
2025-04-29 19:25:29,576 root INFO building 'Bio.Cluster._cluster' extension
2025-04-29 19:25:29,577 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/Cluster
2025-04-29 19:25:29,578 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.linux-x86_64-cpython-312/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY
2025-04-29 19:25:31,723 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.linux-x86_64-cpython-312/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY
2025-04-29 19:25:32,425 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/Cluster/cluster.o build/temp.linux-x86_64-cpython-312/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/Cluster/_cluster.cpython-312-x86_64-linux-musl.so
2025-04-29 19:25:32,445 root INFO building 'Bio.PDB.ccealign' extension
2025-04-29 19:25:32,446 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/PDB
2025-04-29 19:25:32,446 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-x86_64-cpython-312/Bio/PDB/ccealignmodule.o
2025-04-29 19:25:32,784 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/PDB/ccealign.cpython-312-x86_64-linux-musl.so
2025-04-29 19:25:32,801 root INFO building 'Bio.PDB.kdtrees' extension
2025-04-29 19:25:32,802 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.linux-x86_64-cpython-312/Bio/PDB/kdtrees.o
2025-04-29 19:25:33,243 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/PDB/kdtrees.cpython-312-x86_64-linux-musl.so
2025-04-29 19:25:33,262 root INFO building 'Bio.PDB._bcif_helper' extension
2025-04-29 19:25:33,263 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-x86_64-cpython-312/Bio/PDB/bcifhelpermodule.o
2025-04-29 19:25:33,438 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/PDB/bcifhelpermodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/PDB/_bcif_helper.cpython-312-x86_64-linux-musl.so
2025-04-29 19:25:33,453 root INFO building 'Bio.SeqIO._twoBitIO' extension
2025-04-29 19:25:33,453 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-29 19:25:33,454 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.o
2025-04-29 19:25:33,662 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-x86_64-linux-musl.so
2025-04-29 19:25:33,694 root INFO installing to build/bdist.linux-x86_64/wheel
2025-04-29 19:25:33,694 root INFO running install
2025-04-29 19:25:33,717 root INFO running install_lib
2025-04-29 19:25:33,724 root INFO creating build/bdist.linux-x86_64/wheel
2025-04-29 19:25:33,725 root INFO creating build/bdist.linux-x86_64/wheel/BioSQL
2025-04-29 19:25:33,726 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/BioSeqDatabase.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2025-04-29 19:25:33,726 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/Loader.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2025-04-29 19:25:33,727 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/BioSeq.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2025-04-29 19:25:33,727 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/py.typed -> build/bdist.linux-x86_64/wheel/./BioSQL
2025-04-29 19:25:33,727 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/DBUtils.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2025-04-29 19:25:33,728 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/__init__.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2025-04-29 19:25:33,728 root INFO creating build/bdist.linux-x86_64/wheel/Bio
2025-04-29 19:25:33,729 root INFO creating build/bdist.linux-x86_64/wheel/Bio/phenotype
2025-04-29 19:25:33,729 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/phenotype/pm_fitting.py -> build/bdist.linux-x86_64/wheel/./Bio/phenotype
2025-04-29 19:25:33,730 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/phenotype/phen_micro.py -> build/bdist.linux-x86_64/wheel/./Bio/phenotype
2025-04-29 19:25:33,730 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/phenotype/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/phenotype
2025-04-29 19:25:33,731 root INFO creating build/bdist.linux-x86_64/wheel/Bio/motifs
2025-04-29 19:25:33,731 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/transfac.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-29 19:25:33,731 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/_pwm.c -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-29 19:25:33,732 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/meme.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-29 19:25:33,732 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/mast.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-29 19:25:33,733 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/_pwm.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-29 19:25:33,733 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/alignace.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-29 19:25:33,733 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/thresholds.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-29 19:25:33,734 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/clusterbuster.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-29 19:25:33,734 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/minimal.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-29 19:25:33,734 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/matrix.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-29 19:25:33,735 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/xms.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-29 19:25:33,735 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-29 19:25:33,736 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/pfm.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-29 19:25:33,736 root INFO creating build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar
2025-04-29 19:25:33,737 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar/db.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs/jaspar
2025-04-29 19:25:33,737 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs/jaspar
2025-04-29 19:25:33,737 root INFO creating build/bdist.linux-x86_64/wheel/Bio/motifs/applications
2025-04-29 19:25:33,738 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/applications/_xxmotif.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs/applications
2025-04-29 19:25:33,738 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/applications/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs/applications
2025-04-29 19:25:33,738 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/File.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-29 19:25:33,739 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Medline
2025-04-29 19:25:33,739 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Medline/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Medline
2025-04-29 19:25:33,740 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/MaxEntropy.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-29 19:25:33,740 root INFO creating build/bdist.linux-x86_64/wheel/Bio/HMM
2025-04-29 19:25:33,740 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/Trainer.py -> build/bdist.linux-x86_64/wheel/./Bio/HMM
2025-04-29 19:25:33,741 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/DynamicProgramming.py -> build/bdist.linux-x86_64/wheel/./Bio/HMM
2025-04-29 19:25:33,741 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/MarkovModel.py -> build/bdist.linux-x86_64/wheel/./Bio/HMM
2025-04-29 19:25:33,741 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/HMM
2025-04-29 19:25:33,742 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/Utilities.py -> build/bdist.linux-x86_64/wheel/./Bio/HMM
2025-04-29 19:25:33,742 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/_utils.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-29 19:25:33,742 root INFO creating build/bdist.linux-x86_64/wheel/Bio/CAPS
2025-04-29 19:25:33,743 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/CAPS/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/CAPS
2025-04-29 19:25:33,743 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Cluster
2025-04-29 19:25:33,743 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/cluster.h -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2025-04-29 19:25:33,744 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/_cluster.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2025-04-29 19:25:33,744 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/clustermodule.c -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2025-04-29 19:25:33,745 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2025-04-29 19:25:33,745 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/cluster.c -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2025-04-29 19:25:33,746 root INFO creating build/bdist.linux-x86_64/wheel/Bio/UniProt
2025-04-29 19:25:33,746 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/UniProt/GOA.py -> build/bdist.linux-x86_64/wheel/./Bio/UniProt
2025-04-29 19:25:33,746 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/UniProt/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/UniProt
2025-04-29 19:25:33,747 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SVDSuperimposer
2025-04-29 19:25:33,747 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SVDSuperimposer
2025-04-29 19:25:33,747 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Application
2025-04-29 19:25:33,748 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Application/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Application
2025-04-29 19:25:33,748 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Nexus
2025-04-29 19:25:33,748 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/cnexus.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2025-04-29 19:25:33,749 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/Nexus.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2025-04-29 19:25:33,749 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/Trees.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2025-04-29 19:25:33,750 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/StandardData.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2025-04-29 19:25:33,750 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/cnexus.c -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2025-04-29 19:25:33,750 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2025-04-29 19:25:33,751 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/Nodes.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2025-04-29 19:25:33,751 root INFO creating build/bdist.linux-x86_64/wheel/Bio/ExPASy
2025-04-29 19:25:33,751 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2025-04-29 19:25:33,752 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/Prodoc.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2025-04-29 19:25:33,752 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2025-04-29 19:25:33,752 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/Enzyme.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2025-04-29 19:25:33,752 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/Prosite.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2025-04-29 19:25:33,753 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2025-04-29 19:25:33,753 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Restriction
2025-04-29 19:25:33,753 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction
2025-04-29 19:25:33,754 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Restriction/PrintFormat.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction
2025-04-29 19:25:33,755 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Restriction/Restriction.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction
2025-04-29 19:25:33,755 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Restriction/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction
2025-04-29 19:25:33,756 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SeqIO
2025-04-29 19:25:33,756 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,756 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/GckIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,756 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,757 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,757 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/PdbIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,757 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,758 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,758 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/AceIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,758 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,759 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/PirIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,759 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/IgIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,759 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/_index.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,759 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/SffIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,760 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,760 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/NibIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,760 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/AbiIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,761 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,761 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,761 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/PhdIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,761 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,762 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/GfaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,762 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/SwissIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,762 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/TabIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,763 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,763 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/QualityIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-29 19:25:33,763 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Pathway
2025-04-29 19:25:33,764 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep
2025-04-29 19:25:33,764 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway/Rep
2025-04-29 19:25:33,764 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway/Rep
2025-04-29 19:25:33,764 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway/Rep
2025-04-29 19:25:33,765 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Pathway/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway
2025-04-29 19:25:33,765 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez
2025-04-29 19:25:33,766 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs
2025-04-29 19:25:33,766 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,766 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,766 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,767 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,767 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,767 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,767 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,768 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,768 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eSearch_020511.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,768 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,769 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,769 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,769 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,770 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,770 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,770 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,770 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,771 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,771 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,771 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,771 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,772 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,772 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,772 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,773 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,773 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,773 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,773 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,774 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,774 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,774 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,774 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,775 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,775 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,775 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,775 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,775 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,776 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,776 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,776 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,776 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,777 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,777 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,777 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,777 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,778 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,778 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,778 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,779 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,779 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,779 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/articlemeta.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,779 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,779 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,780 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,780 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,780 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,780 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,781 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,781 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,781 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,781 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,782 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,782 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,782 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,782 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,782 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,783 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,783 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,783 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,783 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,783 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,784 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,784 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,784 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,784 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,785 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,785 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,785 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,786 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,786 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,786 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,786 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,786 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,787 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,787 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,787 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,787 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,787 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,788 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,788 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,788 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,788 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,789 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isodia.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,789 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,789 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,789 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,789 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,790 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,790 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,790 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,790 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,790 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,791 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,791 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,791 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,791 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,792 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,792 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,792 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,792 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,792 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,793 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,793 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,793 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,793 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_020114.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,794 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_140101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,794 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,794 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,794 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,794 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,795 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,795 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,795 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,795 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,796 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,796 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,796 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,796 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,796 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,797 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,797 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,797 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,797 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,798 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,798 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,798 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,798 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,798 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,799 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,799 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,799 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,799 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,799 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,800 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,800 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,800 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,800 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,800 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,801 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,801 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,801 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,802 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,802 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,802 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,802 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,803 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,803 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,803 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,803 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,803 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,804 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,804 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,804 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,804 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,804 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,805 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,805 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,805 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,805 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,806 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,806 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,806 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,806 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,806 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,807 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,807 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,807 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,807 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,807 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,808 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,808 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,808 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,808 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,809 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,809 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,809 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,809 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,809 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,809 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,810 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,810 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,810 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,810 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,811 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,811 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,811 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,811 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,811 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,812 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,812 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,812 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,812 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,812 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,813 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/section.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,813 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,813 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,813 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,814 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,814 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,814 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,814 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,814 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,815 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,815 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,815 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,815 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,815 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,816 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,816 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,816 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,816 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,816 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,817 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,817 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,817 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,817 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,817 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathml3.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,818 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,818 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,818 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,818 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,819 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,819 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,819 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,819 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PDB_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,819 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,820 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,820 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,820 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,820 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,820 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,821 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,821 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,821 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,821 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,821 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,822 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,822 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,822 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,822 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,822 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,823 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,823 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,823 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,823 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,823 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,824 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,824 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,824 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,824 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,824 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,825 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,825 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,825 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,825 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,825 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,826 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,826 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,826 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,826 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,826 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,827 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,827 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,827 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,827 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,827 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,828 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,828 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,828 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,828 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,829 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,829 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,829 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,829 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,829 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,830 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,830 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,830 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-29 19:25:33,830 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs
2025-04-29 19:25:33,830 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/XSDs
2025-04-29 19:25:33,831 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/XSDs
2025-04-29 19:25:33,831 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/XSDs
2025-04-29 19:25:33,831 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/Parser.py -> build/bdist.linux-x86_64/wheel/./Bio/Entrez
2025-04-29 19:25:33,831 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Entrez
2025-04-29 19:25:33,832 root INFO creating build/bdist.linux-x86_64/wheel/Bio/UniGene
2025-04-29 19:25:33,832 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/UniGene/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/UniGene
2025-04-29 19:25:33,832 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/cpairwise2module.c -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-29 19:25:33,832 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/pairwise2.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-29 19:25:33,832 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/kNN.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-29 19:25:33,833 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/cpairwise2.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-29 19:25:33,833 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align
2025-04-29 19:25:33,833 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/bigmaf.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,833 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/bigbed.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,833 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/psl.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,834 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_aligncore.c -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,834 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/exonerate.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,834 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/bed.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,834 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/a2m.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,834 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/mauve.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,835 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/interfaces.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,835 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/sam.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,835 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/msf.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,835 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_aligncore.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,836 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_codonaligner.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,836 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/nexus.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,836 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/phylip.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,836 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/clustal.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,836 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/emboss.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,836 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/maf.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,837 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align/Applications
2025-04-29 19:25:33,837 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Prank.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/Applications
2025-04-29 19:25:33,837 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Dialign.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/Applications
2025-04-29 19:25:33,837 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Mafft.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/Applications
2025-04-29 19:25:33,838 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_TCoffee.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/Applications
2025-04-29 19:25:33,838 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Muscle.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/Applications
2025-04-29 19:25:33,838 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Clustalw.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/Applications
2025-04-29 19:25:33,838 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Probcons.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/Applications
2025-04-29 19:25:33,838 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_ClustalOmega.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/Applications
2025-04-29 19:25:33,839 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/Applications
2025-04-29 19:25:33,839 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_MSAProbs.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/Applications
2025-04-29 19:25:33,839 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_codonaligner.c -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,839 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/analysis.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,839 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.c -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,840 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/chain.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,840 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/tabular.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,840 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/stockholm.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,840 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/AlignInfo.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,841 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/bigpsl.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,841 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,841 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/hhr.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,841 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices
2025-04-29 19:25:33,842 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,842 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,842 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,842 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,842 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,843 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,843 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,843 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,843 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,843 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,843 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,844 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,844 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,844 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,844 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,844 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,845 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,845 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,845 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,845 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,845 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,845 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,846 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,846 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,846 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,846 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,846 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,847 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,847 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,847 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,847 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-29 19:25:33,847 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices
2025-04-29 19:25:33,847 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/fasta.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,848 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-29 19:25:33,848 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Seq.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-29 19:25:33,848 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SeqUtils
2025-04-29 19:25:33,849 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2025-04-29 19:25:33,849 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/lcc.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2025-04-29 19:25:33,849 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2025-04-29 19:25:33,849 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2025-04-29 19:25:33,849 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2025-04-29 19:25:33,850 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2025-04-29 19:25:33,850 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2025-04-29 19:25:33,850 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/bgzf.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-29 19:25:33,850 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Sequencing
2025-04-29 19:25:33,851 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Ace.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing
2025-04-29 19:25:33,851 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Phd.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing
2025-04-29 19:25:33,851 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications
2025-04-29 19:25:33,851 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications/_Novoalign.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing/Applications
2025-04-29 19:25:33,851 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications/_bwa.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing/Applications
2025-04-29 19:25:33,852 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing/Applications
2025-04-29 19:25:33,852 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications/_samtools.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing/Applications
2025-04-29 19:25:33,852 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing
2025-04-29 19:25:33,852 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Compass
2025-04-29 19:25:33,853 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Compass/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Compass
2025-04-29 19:25:33,853 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Alphabet
2025-04-29 19:25:33,853 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Alphabet/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Alphabet
2025-04-29 19:25:33,853 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Graphics
2025-04-29 19:25:33,853 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/KGML_vis.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2025-04-29 19:25:33,854 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/Distribution.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2025-04-29 19:25:33,854 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2025-04-29 19:25:33,854 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2025-04-29 19:25:33,854 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/Comparative.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2025-04-29 19:25:33,854 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2025-04-29 19:25:33,855 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2025-04-29 19:25:33,855 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram
2025-04-29 19:25:33,855 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2025-04-29 19:25:33,855 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2025-04-29 19:25:33,855 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2025-04-29 19:25:33,856 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2025-04-29 19:25:33,856 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2025-04-29 19:25:33,856 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2025-04-29 19:25:33,856 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2025-04-29 19:25:33,856 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2025-04-29 19:25:33,857 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2025-04-29 19:25:33,857 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2025-04-29 19:25:33,857 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2025-04-29 19:25:33,857 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2025-04-29 19:25:33,857 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/NaiveBayes.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-29 19:25:33,858 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Geo
2025-04-29 19:25:33,858 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Geo/Record.py -> build/bdist.linux-x86_64/wheel/./Bio/Geo
2025-04-29 19:25:33,858 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Geo/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Geo
2025-04-29 19:25:33,858 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Blast
2025-04-29 19:25:33,859 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/NCBIXML.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2025-04-29 19:25:33,859 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/Applications.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2025-04-29 19:25:33,859 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/_writers.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2025-04-29 19:25:33,859 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/_parser.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2025-04-29 19:25:33,860 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2025-04-29 19:25:33,860 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/NCBIWWW.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2025-04-29 19:25:33,860 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PDB
2025-04-29 19:25:33,860 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,860 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/MMCIFParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,861 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PDBIO.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,861 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/kdtrees.c -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,861 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PDBExceptions.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,861 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf
2025-04-29 19:25:33,861 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB/mmtf
2025-04-29 19:25:33,862 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB/mmtf
2025-04-29 19:25:33,862 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB/mmtf
2025-04-29 19:25:33,862 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/vectors.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,862 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ic_rebuild.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,862 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,863 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ic_data.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,863 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ccealignmodule.c -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,863 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Model.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,863 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ccealign.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,863 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Chain.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,864 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Superimposer.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,864 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/cealign.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,864 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Atom.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,864 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/HSExposure.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,864 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/FragmentMapper.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,865 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/SASA.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,865 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/mmcifio.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,865 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/StructureBuilder.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,865 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PDBMLParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,865 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PICIO.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,866 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/StructureAlignment.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,866 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/NeighborSearch.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,866 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PSEA.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,866 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/qcprot.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,866 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Selection.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,867 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/internal_coords.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,867 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Entity.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,867 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Polypeptide.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,867 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PDBParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,868 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/alphafold_db.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,868 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Dice.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,868 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Residue.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,868 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/binary_cif.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,868 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,868 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ResidueDepth.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,869 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/DSSP.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,869 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/NACCESS.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,869 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Structure.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,869 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/SCADIO.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,869 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,870 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,870 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/kdtrees.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,870 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PDBList.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,870 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/_bcif_helper.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-29 19:25:33,871 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Emboss
2025-04-29 19:25:33,871 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Emboss/Primer3.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss
2025-04-29 19:25:33,871 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Emboss/Applications.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss
2025-04-29 19:25:33,871 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss
2025-04-29 19:25:33,871 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Emboss/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss
2025-04-29 19:25:33,871 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/py.typed -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-29 19:25:33,872 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqFeature.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-29 19:25:33,872 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SwissProt
2025-04-29 19:25:33,872 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SwissProt/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SwissProt
2025-04-29 19:25:33,872 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SwissProt/KeyWList.py -> build/bdist.linux-x86_64/wheel/./Bio/SwissProt
2025-04-29 19:25:33,873 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/MarkovModel.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-29 19:25:33,873 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PopGen
2025-04-29 19:25:33,873 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop
2025-04-29 19:25:33,873 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop
2025-04-29 19:25:33,873 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop
2025-04-29 19:25:33,874 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/Controller.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop
2025-04-29 19:25:33,874 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop
2025-04-29 19:25:33,874 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/EasyController.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop
2025-04-29 19:25:33,874 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen
2025-04-29 19:25:33,875 root INFO creating build/bdist.linux-x86_64/wheel/Bio/NMR
2025-04-29 19:25:33,875 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/NMR/xpktools.py -> build/bdist.linux-x86_64/wheel/./Bio/NMR
2025-04-29 19:25:33,875 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/NMR/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/NMR
2025-04-29 19:25:33,875 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/NMR/NOEtools.py -> build/bdist.linux-x86_64/wheel/./Bio/NMR
2025-04-29 19:25:33,875 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-29 19:25:33,876 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/LogisticRegression.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-29 19:25:33,876 root INFO creating build/bdist.linux-x86_64/wheel/Bio/codonalign
2025-04-29 19:25:33,876 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/codonalign/codonseq.py -> build/bdist.linux-x86_64/wheel/./Bio/codonalign
2025-04-29 19:25:33,876 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/codonalign/codonalignment.py -> build/bdist.linux-x86_64/wheel/./Bio/codonalign
2025-04-29 19:25:33,876 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/codonalign/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/codonalign
2025-04-29 19:25:33,877 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Affy
2025-04-29 19:25:33,877 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Affy/CelFile.py -> build/bdist.linux-x86_64/wheel/./Bio/Affy
2025-04-29 19:25:33,877 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Affy/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Affy
2025-04-29 19:25:33,877 root INFO creating build/bdist.linux-x86_64/wheel/Bio/GenBank
2025-04-29 19:25:33,877 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/GenBank/Scanner.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank
2025-04-29 19:25:33,878 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/GenBank/Record.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank
2025-04-29 19:25:33,878 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/GenBank/utils.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank
2025-04-29 19:25:33,878 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/GenBank/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank
2025-04-29 19:25:33,878 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Phylo
2025-04-29 19:25:33,879 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/CDAO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-29 19:25:33,879 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/_utils.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-29 19:25:33,879 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PhyloXML.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-29 19:25:33,879 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-29 19:25:33,880 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-29 19:25:33,880 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/NewickIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-29 19:25:33,880 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-29 19:25:33,880 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/BaseTree.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-29 19:25:33,880 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/CDAOIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-29 19:25:33,881 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Consensus.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-29 19:25:33,881 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-29 19:25:33,881 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications
2025-04-29 19:25:33,881 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications/_Raxml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/Applications
2025-04-29 19:25:33,881 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/Applications
2025-04-29 19:25:33,882 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications/_Fasttree.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/Applications
2025-04-29 19:25:33,882 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications/_Phyml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/Applications
2025-04-29 19:25:33,882 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/_io.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-29 19:25:33,882 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Newick.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-29 19:25:33,882 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML
2025-04-29 19:25:33,883 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2025-04-29 19:25:33,883 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2025-04-29 19:25:33,883 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2025-04-29 19:25:33,883 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2025-04-29 19:25:33,883 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2025-04-29 19:25:33,884 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2025-04-29 19:25:33,884 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2025-04-29 19:25:33,884 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2025-04-29 19:25:33,884 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2025-04-29 19:25:33,884 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-29 19:25:33,885 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/NexusIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-29 19:25:33,885 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/NeXML.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-29 19:25:33,885 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SCOP
2025-04-29 19:25:33,885 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Raf.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2025-04-29 19:25:33,885 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Cla.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2025-04-29 19:25:33,886 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Dom.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2025-04-29 19:25:33,886 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Hie.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2025-04-29 19:25:33,886 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Des.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2025-04-29 19:25:33,886 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2025-04-29 19:25:33,886 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Residues.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2025-04-29 19:25:33,887 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Data
2025-04-29 19:25:33,887 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Data/IUPACData.py -> build/bdist.linux-x86_64/wheel/./Bio/Data
2025-04-29 19:25:33,887 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Data/PDBData.py -> build/bdist.linux-x86_64/wheel/./Bio/Data
2025-04-29 19:25:33,887 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Data/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Data
2025-04-29 19:25:33,887 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Data/CodonTable.py -> build/bdist.linux-x86_64/wheel/./Bio/Data
2025-04-29 19:25:33,888 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqRecord.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-29 19:25:33,888 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO
2025-04-29 19:25:33,888 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO
2025-04-29 19:25:33,888 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model
2025-04-29 19:25:33,889 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2025-04-29 19:25:33,889 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/hit.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2025-04-29 19:25:33,889 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2025-04-29 19:25:33,889 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/query.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2025-04-29 19:25:33,889 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2025-04-29 19:25:33,890 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO
2025-04-29 19:25:33,890 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2025-04-29 19:25:33,890 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2025-04-29 19:25:33,890 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2025-04-29 19:25:33,890 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2025-04-29 19:25:33,891 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2025-04-29 19:25:33,891 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2025-04-29 19:25:33,891 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_utils.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO
2025-04-29 19:25:33,891 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_index.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO
2025-04-29 19:25:33,891 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO
2025-04-29 19:25:33,892 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2025-04-29 19:25:33,892 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2025-04-29 19:25:33,892 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2025-04-29 19:25:33,892 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2025-04-29 19:25:33,892 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2025-04-29 19:25:33,893 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO
2025-04-29 19:25:33,893 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HHsuiteIO
2025-04-29 19:25:33,893 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HHsuiteIO
2025-04-29 19:25:33,893 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO
2025-04-29 19:25:33,893 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO
2025-04-29 19:25:33,894 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/BlastIO
2025-04-29 19:25:33,894 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/BlastIO
2025-04-29 19:25:33,894 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/BlastIO
2025-04-29 19:25:33,895 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO
2025-04-29 19:25:33,895 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InterproscanIO
2025-04-29 19:25:33,895 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InterproscanIO
2025-04-29 19:25:33,895 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlatIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO
2025-04-29 19:25:33,896 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG
2025-04-29 19:25:33,896 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Gene
2025-04-29 19:25:33,896 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/Gene
2025-04-29 19:25:33,896 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML
2025-04-29 19:25:33,896 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/KGML
2025-04-29 19:25:33,897 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/KGML
2025-04-29 19:25:33,897 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/KGML
2025-04-29 19:25:33,897 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Enzyme
2025-04-29 19:25:33,897 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/Enzyme
2025-04-29 19:25:33,897 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/REST.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG
2025-04-29 19:25:33,898 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Compound
2025-04-29 19:25:33,898 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/Compound
2025-04-29 19:25:33,898 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG
2025-04-29 19:25:33,898 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Map
2025-04-29 19:25:33,899 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/Map/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/Map
2025-04-29 19:25:33,899 root INFO creating build/bdist.linux-x86_64/wheel/Bio/AlignIO
2025-04-29 19:25:33,899 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2025-04-29 19:25:33,899 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/MafIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2025-04-29 19:25:33,899 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/MauveIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2025-04-29 19:25:33,900 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2025-04-29 19:25:33,900 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2025-04-29 19:25:33,900 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2025-04-29 19:25:33,900 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2025-04-29 19:25:33,900 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/NexusIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2025-04-29 19:25:33,901 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2025-04-29 19:25:33,901 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/MsfIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2025-04-29 19:25:33,901 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2025-04-29 19:25:33,901 root INFO creating build/bdist.linux-x86_64/wheel/Bio/TogoWS
2025-04-29 19:25:33,901 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/TogoWS/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/TogoWS
2025-04-29 19:25:33,902 root INFO running install_egg_info
2025-04-29 19:25:33,906 root INFO Copying biopython.egg-info to build/bdist.linux-x86_64/wheel/./biopython-1.85-py3.12.egg-info
2025-04-29 19:25:33,907 root INFO running install_scripts
2025-04-29 19:25:33,914 root INFO creating build/bdist.linux-x86_64/wheel/biopython-1.85.dist-info/WHEEL
2025-04-29 19:25:33,914 wheel INFO creating '/home/buildozer/aports/community/py3-biopython/src/biopython-1.85/.dist/.tmp-8pvmk1ro/biopython-1.85-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
2025-04-29 19:25:33,915 wheel INFO adding 'Bio/File.py'
2025-04-29 19:25:33,915 wheel INFO adding 'Bio/LogisticRegression.py'
2025-04-29 19:25:33,915 wheel INFO adding 'Bio/MarkovModel.py'
2025-04-29 19:25:33,916 wheel INFO adding 'Bio/MaxEntropy.py'
2025-04-29 19:25:33,916 wheel INFO adding 'Bio/NaiveBayes.py'
2025-04-29 19:25:33,916 wheel INFO adding 'Bio/Seq.py'
2025-04-29 19:25:33,917 wheel INFO adding 'Bio/SeqFeature.py'
2025-04-29 19:25:33,917 wheel INFO adding 'Bio/SeqRecord.py'
2025-04-29 19:25:33,918 wheel INFO adding 'Bio/__init__.py'
2025-04-29 19:25:33,918 wheel INFO adding 'Bio/_utils.py'
2025-04-29 19:25:33,918 wheel INFO adding 'Bio/bgzf.py'
2025-04-29 19:25:33,919 wheel INFO adding 'Bio/cpairwise2.cpython-312-x86_64-linux-musl.so'
2025-04-29 19:25:33,919 wheel INFO adding 'Bio/cpairwise2module.c'
2025-04-29 19:25:33,919 wheel INFO adding 'Bio/kNN.py'
2025-04-29 19:25:33,920 wheel INFO adding 'Bio/pairwise2.py'
2025-04-29 19:25:33,920 wheel INFO adding 'Bio/py.typed'
2025-04-29 19:25:33,921 wheel INFO adding 'Bio/Affy/CelFile.py'
2025-04-29 19:25:33,921 wheel INFO adding 'Bio/Affy/__init__.py'
2025-04-29 19:25:33,921 wheel INFO adding 'Bio/Align/AlignInfo.py'
2025-04-29 19:25:33,922 wheel INFO adding 'Bio/Align/__init__.py'
2025-04-29 19:25:33,922 wheel INFO adding 'Bio/Align/_aligncore.c'
2025-04-29 19:25:33,923 wheel INFO adding 'Bio/Align/_aligncore.cpython-312-x86_64-linux-musl.so'
2025-04-29 19:25:33,923 wheel INFO adding 'Bio/Align/_codonaligner.c'
2025-04-29 19:25:33,923 wheel INFO adding 'Bio/Align/_codonaligner.cpython-312-x86_64-linux-musl.so'
2025-04-29 19:25:33,924 wheel INFO adding 'Bio/Align/_pairwisealigner.c'
2025-04-29 19:25:33,925 wheel INFO adding 'Bio/Align/_pairwisealigner.cpython-312-x86_64-linux-musl.so'
2025-04-29 19:25:33,926 wheel INFO adding 'Bio/Align/a2m.py'
2025-04-29 19:25:33,926 wheel INFO adding 'Bio/Align/analysis.py'
2025-04-29 19:25:33,927 wheel INFO adding 'Bio/Align/bed.py'
2025-04-29 19:25:33,927 wheel INFO adding 'Bio/Align/bigbed.py'
2025-04-29 19:25:33,928 wheel INFO adding 'Bio/Align/bigmaf.py'
2025-04-29 19:25:33,928 wheel INFO adding 'Bio/Align/bigpsl.py'
2025-04-29 19:25:33,928 wheel INFO adding 'Bio/Align/chain.py'
2025-04-29 19:25:33,928 wheel INFO adding 'Bio/Align/clustal.py'
2025-04-29 19:25:33,929 wheel INFO adding 'Bio/Align/emboss.py'
2025-04-29 19:25:33,929 wheel INFO adding 'Bio/Align/exonerate.py'
2025-04-29 19:25:33,929 wheel INFO adding 'Bio/Align/fasta.py'
2025-04-29 19:25:33,930 wheel INFO adding 'Bio/Align/hhr.py'
2025-04-29 19:25:33,930 wheel INFO adding 'Bio/Align/interfaces.py'
2025-04-29 19:25:33,930 wheel INFO adding 'Bio/Align/maf.py'
2025-04-29 19:25:33,930 wheel INFO adding 'Bio/Align/mauve.py'
2025-04-29 19:25:33,931 wheel INFO adding 'Bio/Align/msf.py'
2025-04-29 19:25:33,931 wheel INFO adding 'Bio/Align/nexus.py'
2025-04-29 19:25:33,931 wheel INFO adding 'Bio/Align/phylip.py'
2025-04-29 19:25:33,931 wheel INFO adding 'Bio/Align/psl.py'
2025-04-29 19:25:33,932 wheel INFO adding 'Bio/Align/sam.py'
2025-04-29 19:25:33,932 wheel INFO adding 'Bio/Align/stockholm.py'
2025-04-29 19:25:33,932 wheel INFO adding 'Bio/Align/tabular.py'
2025-04-29 19:25:33,933 wheel INFO adding 'Bio/Align/Applications/_ClustalOmega.py'
2025-04-29 19:25:33,933 wheel INFO adding 'Bio/Align/Applications/_Clustalw.py'
2025-04-29 19:25:33,933 wheel INFO adding 'Bio/Align/Applications/_Dialign.py'
2025-04-29 19:25:33,933 wheel INFO adding 'Bio/Align/Applications/_MSAProbs.py'
2025-04-29 19:25:33,934 wheel INFO adding 'Bio/Align/Applications/_Mafft.py'
2025-04-29 19:25:33,934 wheel INFO adding 'Bio/Align/Applications/_Muscle.py'
2025-04-29 19:25:33,934 wheel INFO adding 'Bio/Align/Applications/_Prank.py'
2025-04-29 19:25:33,934 wheel INFO adding 'Bio/Align/Applications/_Probcons.py'
2025-04-29 19:25:33,935 wheel INFO adding 'Bio/Align/Applications/_TCoffee.py'
2025-04-29 19:25:33,935 wheel INFO adding 'Bio/Align/Applications/__init__.py'
2025-04-29 19:25:33,935 wheel INFO adding 'Bio/Align/substitution_matrices/__init__.py'
2025-04-29 19:25:33,935 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER22'
2025-04-29 19:25:33,936 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER6'
2025-04-29 19:25:33,936 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER74'
2025-04-29 19:25:33,936 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLASTN'
2025-04-29 19:25:33,936 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLASTP'
2025-04-29 19:25:33,936 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM45'
2025-04-29 19:25:33,937 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM50'
2025-04-29 19:25:33,937 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM62'
2025-04-29 19:25:33,937 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM80'
2025-04-29 19:25:33,937 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM90'
2025-04-29 19:25:33,937 wheel INFO adding 'Bio/Align/substitution_matrices/data/DAYHOFF'
2025-04-29 19:25:33,938 wheel INFO adding 'Bio/Align/substitution_matrices/data/FENG'
2025-04-29 19:25:33,938 wheel INFO adding 'Bio/Align/substitution_matrices/data/GENETIC'
2025-04-29 19:25:33,938 wheel INFO adding 'Bio/Align/substitution_matrices/data/GONNET1992'
2025-04-29 19:25:33,938 wheel INFO adding 'Bio/Align/substitution_matrices/data/HOXD70'
2025-04-29 19:25:33,938 wheel INFO adding 'Bio/Align/substitution_matrices/data/JOHNSON'
2025-04-29 19:25:33,939 wheel INFO adding 'Bio/Align/substitution_matrices/data/JONES'
2025-04-29 19:25:33,939 wheel INFO adding 'Bio/Align/substitution_matrices/data/LEVIN'
2025-04-29 19:25:33,939 wheel INFO adding 'Bio/Align/substitution_matrices/data/MCLACHLAN'
2025-04-29 19:25:33,939 wheel INFO adding 'Bio/Align/substitution_matrices/data/MDM78'
2025-04-29 19:25:33,939 wheel INFO adding 'Bio/Align/substitution_matrices/data/MEGABLAST'
2025-04-29 19:25:33,939 wheel INFO adding 'Bio/Align/substitution_matrices/data/NUC.4.4'
2025-04-29 19:25:33,940 wheel INFO adding 'Bio/Align/substitution_matrices/data/PAM250'
2025-04-29 19:25:33,940 wheel INFO adding 'Bio/Align/substitution_matrices/data/PAM30'
2025-04-29 19:25:33,940 wheel INFO adding 'Bio/Align/substitution_matrices/data/PAM70'
2025-04-29 19:25:33,940 wheel INFO adding 'Bio/Align/substitution_matrices/data/RAO'
2025-04-29 19:25:33,940 wheel INFO adding 'Bio/Align/substitution_matrices/data/RISLER'
2025-04-29 19:25:33,941 wheel INFO adding 'Bio/Align/substitution_matrices/data/SCHNEIDER'
2025-04-29 19:25:33,941 wheel INFO adding 'Bio/Align/substitution_matrices/data/STR'
2025-04-29 19:25:33,941 wheel INFO adding 'Bio/Align/substitution_matrices/data/TRANS'
2025-04-29 19:25:33,941 wheel INFO adding 'Bio/AlignIO/ClustalIO.py'
2025-04-29 19:25:33,942 wheel INFO adding 'Bio/AlignIO/EmbossIO.py'
2025-04-29 19:25:33,942 wheel INFO adding 'Bio/AlignIO/FastaIO.py'
2025-04-29 19:25:33,942 wheel INFO adding 'Bio/AlignIO/Interfaces.py'
2025-04-29 19:25:33,942 wheel INFO adding 'Bio/AlignIO/MafIO.py'
2025-04-29 19:25:33,943 wheel INFO adding 'Bio/AlignIO/MauveIO.py'
2025-04-29 19:25:33,943 wheel INFO adding 'Bio/AlignIO/MsfIO.py'
2025-04-29 19:25:33,943 wheel INFO adding 'Bio/AlignIO/NexusIO.py'
2025-04-29 19:25:33,944 wheel INFO adding 'Bio/AlignIO/PhylipIO.py'
2025-04-29 19:25:33,944 wheel INFO adding 'Bio/AlignIO/StockholmIO.py'
2025-04-29 19:25:33,944 wheel INFO adding 'Bio/AlignIO/__init__.py'
2025-04-29 19:25:33,944 wheel INFO adding 'Bio/Alphabet/__init__.py'
2025-04-29 19:25:33,945 wheel INFO adding 'Bio/Application/__init__.py'
2025-04-29 19:25:33,945 wheel INFO adding 'Bio/Blast/Applications.py'
2025-04-29 19:25:33,946 wheel INFO adding 'Bio/Blast/NCBIWWW.py'
2025-04-29 19:25:33,946 wheel INFO adding 'Bio/Blast/NCBIXML.py'
2025-04-29 19:25:33,946 wheel INFO adding 'Bio/Blast/__init__.py'
2025-04-29 19:25:33,947 wheel INFO adding 'Bio/Blast/_parser.py'
2025-04-29 19:25:33,947 wheel INFO adding 'Bio/Blast/_writers.py'
2025-04-29 19:25:33,947 wheel INFO adding 'Bio/CAPS/__init__.py'
2025-04-29 19:25:33,948 wheel INFO adding 'Bio/Cluster/__init__.py'
2025-04-29 19:25:33,948 wheel INFO adding 'Bio/Cluster/_cluster.cpython-312-x86_64-linux-musl.so'
2025-04-29 19:25:33,949 wheel INFO adding 'Bio/Cluster/cluster.c'
2025-04-29 19:25:33,950 wheel INFO adding 'Bio/Cluster/cluster.h'
2025-04-29 19:25:33,950 wheel INFO adding 'Bio/Cluster/clustermodule.c'
2025-04-29 19:25:33,950 wheel INFO adding 'Bio/Compass/__init__.py'
2025-04-29 19:25:33,951 wheel INFO adding 'Bio/Data/CodonTable.py'
2025-04-29 19:25:33,951 wheel INFO adding 'Bio/Data/IUPACData.py'
2025-04-29 19:25:33,951 wheel INFO adding 'Bio/Data/PDBData.py'
2025-04-29 19:25:33,952 wheel INFO adding 'Bio/Data/__init__.py'
2025-04-29 19:25:33,952 wheel INFO adding 'Bio/Emboss/Applications.py'
2025-04-29 19:25:33,952 wheel INFO adding 'Bio/Emboss/Primer3.py'
2025-04-29 19:25:33,953 wheel INFO adding 'Bio/Emboss/PrimerSearch.py'
2025-04-29 19:25:33,953 wheel INFO adding 'Bio/Emboss/__init__.py'
2025-04-29 19:25:33,953 wheel INFO adding 'Bio/Entrez/Parser.py'
2025-04-29 19:25:33,953 wheel INFO adding 'Bio/Entrez/__init__.py'
2025-04-29 19:25:33,954 wheel INFO adding 'Bio/Entrez/DTDs/BITS-embedded-index2.ent'
2025-04-29 19:25:33,954 wheel INFO adding 'Bio/Entrez/DTDs/BITS-question-answer2.ent'
2025-04-29 19:25:33,955 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_0.dtd'
2025-04-29 19:25:33,955 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_0.mod.dtd'
2025-04-29 19:25:33,955 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_1.dtd'
2025-04-29 19:25:33,955 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_1.mod.dtd'
2025-04-29 19:25:33,956 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_2.dtd'
2025-04-29 19:25:33,956 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_2.mod.dtd'
2025-04-29 19:25:33,956 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_3.dtd'
2025-04-29 19:25:33,957 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_3.mod.dtd'
2025-04-29 19:25:33,957 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_4.dtd'
2025-04-29 19:25:33,957 wheel INFO adding 'Bio/Entrez/DTDs/Docsum_3_4.mod.dtd'
2025-04-29 19:25:33,958 wheel INFO adding 'Bio/Entrez/DTDs/EMBL_General.dtd'
2025-04-29 19:25:33,958 wheel INFO adding 'Bio/Entrez/DTDs/EMBL_General.mod.dtd'
2025-04-29 19:25:33,958 wheel INFO adding 'Bio/Entrez/DTDs/GenBank_General.dtd'
2025-04-29 19:25:33,958 wheel INFO adding 'Bio/Entrez/DTDs/GenBank_General.mod.dtd'
2025-04-29 19:25:33,958 wheel INFO adding 'Bio/Entrez/DTDs/HomoloGene.dtd'
2025-04-29 19:25:33,959 wheel INFO adding 'Bio/Entrez/DTDs/HomoloGene.mod.dtd'
2025-04-29 19:25:33,959 wheel INFO adding 'Bio/Entrez/DTDs/INSD_INSDSeq.dtd'
2025-04-29 19:25:33,959 wheel INFO adding 'Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd'
2025-04-29 19:25:33,959 wheel INFO adding 'Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent'
2025-04-29 19:25:33,960 wheel INFO adding 'Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent'
2025-04-29 19:25:33,960 wheel INFO adding 'Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd'
2025-04-29 19:25:33,960 wheel INFO adding 'Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent'
2025-04-29 19:25:33,961 wheel INFO adding 'Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent'
2025-04-29 19:25:33,961 wheel INFO adding 'Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent'
2025-04-29 19:25:33,962 wheel INFO adding 'Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent'
2025-04-29 19:25:33,962 wheel INFO adding 'Bio/Entrez/DTDs/JATS-articlemeta1-3.ent'
2025-04-29 19:25:33,963 wheel INFO adding 'Bio/Entrez/DTDs/JATS-backmatter1-3.ent'
2025-04-29 19:25:33,963 wheel INFO adding 'Bio/Entrez/DTDs/JATS-chars1-3.ent'
2025-04-29 19:25:33,963 wheel INFO adding 'Bio/Entrez/DTDs/JATS-common-atts1-3.ent'
2025-04-29 19:25:33,964 wheel INFO adding 'Bio/Entrez/DTDs/JATS-common1-3.ent'
2025-04-29 19:25:33,965 wheel INFO adding 'Bio/Entrez/DTDs/JATS-default-classes1-3.ent'
2025-04-29 19:25:33,965 wheel INFO adding 'Bio/Entrez/DTDs/JATS-default-mixes1-3.ent'
2025-04-29 19:25:33,966 wheel INFO adding 'Bio/Entrez/DTDs/JATS-display1-3.ent'
2025-04-29 19:25:33,966 wheel INFO adding 'Bio/Entrez/DTDs/JATS-format1-3.ent'
2025-04-29 19:25:33,967 wheel INFO adding 'Bio/Entrez/DTDs/JATS-funding1-3.ent'
2025-04-29 19:25:33,967 wheel INFO adding 'Bio/Entrez/DTDs/JATS-journalmeta1-3.ent'
2025-04-29 19:25:33,967 wheel INFO adding 'Bio/Entrez/DTDs/JATS-link1-3.ent'
2025-04-29 19:25:33,968 wheel INFO adding 'Bio/Entrez/DTDs/JATS-list1-3.ent'
2025-04-29 19:25:33,968 wheel INFO adding 'Bio/Entrez/DTDs/JATS-math1-3.ent'
2025-04-29 19:25:33,969 wheel INFO adding 'Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent'
2025-04-29 19:25:33,969 wheel INFO adding 'Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent'
2025-04-29 19:25:33,969 wheel INFO adding 'Bio/Entrez/DTDs/JATS-modules1-3.ent'
2025-04-29 19:25:33,969 wheel INFO adding 'Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent'
2025-04-29 19:25:33,970 wheel INFO adding 'Bio/Entrez/DTDs/JATS-notat1-3.ent'
2025-04-29 19:25:33,970 wheel INFO adding 'Bio/Entrez/DTDs/JATS-para1-3.ent'
2025-04-29 19:25:33,970 wheel INFO adding 'Bio/Entrez/DTDs/JATS-phrase1-3.ent'
2025-04-29 19:25:33,971 wheel INFO adding 'Bio/Entrez/DTDs/JATS-references1-3.ent'
2025-04-29 19:25:33,971 wheel INFO adding 'Bio/Entrez/DTDs/JATS-related-object1-3.ent'
2025-04-29 19:25:33,972 wheel INFO adding 'Bio/Entrez/DTDs/JATS-section1-3.ent'
2025-04-29 19:25:33,972 wheel INFO adding 'Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent'
2025-04-29 19:25:33,972 wheel INFO adding 'Bio/Entrez/DTDs/MMDB.dtd'
2025-04-29 19:25:33,972 wheel INFO adding 'Bio/Entrez/DTDs/MMDB.mod.dtd'
2025-04-29 19:25:33,973 wheel INFO adding 'Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd'
2025-04-29 19:25:33,973 wheel INFO adding 'Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd'
2025-04-29 19:25:33,973 wheel INFO adding 'Bio/Entrez/DTDs/MMDB_Features.dtd'
2025-04-29 19:25:33,973 wheel INFO adding 'Bio/Entrez/DTDs/MMDB_Features.mod.dtd'
2025-04-29 19:25:33,974 wheel INFO adding 'Bio/Entrez/DTDs/MMDB_Structural_model.dtd'
2025-04-29 19:25:33,974 wheel INFO adding 'Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd'
2025-04-29 19:25:33,974 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Access.dtd'
2025-04-29 19:25:33,974 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Access.mod.dtd'
2025-04-29 19:25:33,975 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Biblio.dtd'
2025-04-29 19:25:33,975 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd'
2025-04-29 19:25:33,975 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BioSource.dtd'
2025-04-29 19:25:33,975 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd'
2025-04-29 19:25:33,975 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BioTree.dtd'
2025-04-29 19:25:33,976 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd'
2025-04-29 19:25:33,976 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Blast4.dtd'
2025-04-29 19:25:33,976 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd'
2025-04-29 19:25:33,976 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BlastDL.dtd'
2025-04-29 19:25:33,977 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd'
2025-04-29 19:25:33,977 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BlastOutput.dtd'
2025-04-29 19:25:33,977 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd'
2025-04-29 19:25:33,977 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Cdd.dtd'
2025-04-29 19:25:33,978 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd'
2025-04-29 19:25:33,978 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Cn3d.dtd'
2025-04-29 19:25:33,978 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd'
2025-04-29 19:25:33,978 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Entity.mod.dtd'
2025-04-29 19:25:33,979 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Entrez2.dtd'
2025-04-29 19:25:33,979 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd'
2025-04-29 19:25:33,979 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Entrezgene.dtd'
2025-04-29 19:25:33,979 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd'
2025-04-29 19:25:33,979 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_FeatDef.dtd'
2025-04-29 19:25:33,980 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd'
2025-04-29 19:25:33,980 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_GBSeq.dtd'
2025-04-29 19:25:33,980 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd'
2025-04-29 19:25:33,980 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Gene.dtd'
2025-04-29 19:25:33,980 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Gene.mod.dtd'
2025-04-29 19:25:33,981 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_General.dtd'
2025-04-29 19:25:33,981 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_General.mod.dtd'
2025-04-29 19:25:33,981 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ID1Access.dtd'
2025-04-29 19:25:33,981 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd'
2025-04-29 19:25:33,982 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ID2Access.dtd'
2025-04-29 19:25:33,982 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd'
2025-04-29 19:25:33,982 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_MedArchive.dtd'
2025-04-29 19:25:33,982 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd'
2025-04-29 19:25:33,983 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Medlars.dtd'
2025-04-29 19:25:33,983 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd'
2025-04-29 19:25:33,983 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Medline.dtd'
2025-04-29 19:25:33,983 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Medline.mod.dtd'
2025-04-29 19:25:33,983 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Mim.dtd'
2025-04-29 19:25:33,984 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Mim.mod.dtd'
2025-04-29 19:25:33,984 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Mime.dtd'
2025-04-29 19:25:33,984 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Mime.mod.dtd'
2025-04-29 19:25:33,984 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ObjPrt.dtd'
2025-04-29 19:25:33,984 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd'
2025-04-29 19:25:33,985 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Organism.dtd'
2025-04-29 19:25:33,985 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Organism.mod.dtd'
2025-04-29 19:25:33,985 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_PCAssay.dtd'
2025-04-29 19:25:33,985 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd'
2025-04-29 19:25:33,986 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_PCSubstance.dtd'
2025-04-29 19:25:33,986 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd'
2025-04-29 19:25:33,986 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Project.dtd'
2025-04-29 19:25:33,986 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Project.mod.dtd'
2025-04-29 19:25:33,987 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Protein.dtd'
2025-04-29 19:25:33,987 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Protein.mod.dtd'
2025-04-29 19:25:33,987 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Pub.dtd'
2025-04-29 19:25:33,987 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Pub.mod.dtd'
2025-04-29 19:25:33,987 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_PubMed.dtd'
2025-04-29 19:25:33,987 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd'
2025-04-29 19:25:33,988 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_RNA.dtd'
2025-04-29 19:25:33,988 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_RNA.mod.dtd'
2025-04-29 19:25:33,988 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Remap.dtd'
2025-04-29 19:25:33,988 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Remap.mod.dtd'
2025-04-29 19:25:33,989 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Rsite.dtd'
2025-04-29 19:25:33,989 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd'
2025-04-29 19:25:33,989 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ScoreMat.dtd'
2025-04-29 19:25:33,989 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd'
2025-04-29 19:25:33,989 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_SeqCode.dtd'
2025-04-29 19:25:33,990 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd'
2025-04-29 19:25:33,990 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_SeqTable.dtd'
2025-04-29 19:25:33,990 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd'
2025-04-29 19:25:33,990 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seq_split.dtd'
2025-04-29 19:25:33,991 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd'
2025-04-29 19:25:33,991 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqalign.dtd'
2025-04-29 19:25:33,991 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd'
2025-04-29 19:25:33,991 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqfeat.dtd'
2025-04-29 19:25:33,992 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd'
2025-04-29 19:25:33,992 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqloc.dtd'
2025-04-29 19:25:33,992 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd'
2025-04-29 19:25:33,992 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqres.dtd'
2025-04-29 19:25:33,992 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd'
2025-04-29 19:25:33,993 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqset.dtd'
2025-04-29 19:25:33,993 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd'
2025-04-29 19:25:33,993 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Sequence.dtd'
2025-04-29 19:25:33,993 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd'
2025-04-29 19:25:33,994 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Submit.dtd'
2025-04-29 19:25:33,994 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Submit.mod.dtd'
2025-04-29 19:25:33,994 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Systems.dtd'
2025-04-29 19:25:33,994 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_TSeq.dtd'
2025-04-29 19:25:33,994 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd'
2025-04-29 19:25:33,995 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_TxInit.dtd'
2025-04-29 19:25:33,995 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd'
2025-04-29 19:25:33,995 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Variation.dtd'
2025-04-29 19:25:33,995 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_Variation.mod.dtd'
2025-04-29 19:25:33,996 wheel INFO adding 'Bio/Entrez/DTDs/NCBI_all.dtd'
2025-04-29 19:25:33,996 wheel INFO adding 'Bio/Entrez/DTDs/NSE.dtd'
2025-04-29 19:25:33,996 wheel INFO adding 'Bio/Entrez/DTDs/NSE.mod.dtd'
2025-04-29 19:25:33,996 wheel INFO adding 'Bio/Entrez/DTDs/OMSSA.dtd'
2025-04-29 19:25:33,997 wheel INFO adding 'Bio/Entrez/DTDs/OMSSA.mod.dtd'
2025-04-29 19:25:33,997 wheel INFO adding 'Bio/Entrez/DTDs/PDB_General.dtd'
2025-04-29 19:25:33,997 wheel INFO adding 'Bio/Entrez/DTDs/PDB_General.mod.dtd'
2025-04-29 19:25:33,997 wheel INFO adding 'Bio/Entrez/DTDs/PIR_General.dtd'
2025-04-29 19:25:33,998 wheel INFO adding 'Bio/Entrez/DTDs/PIR_General.mod.dtd'
2025-04-29 19:25:33,998 wheel INFO adding 'Bio/Entrez/DTDs/PRF_General.dtd'
2025-04-29 19:25:33,998 wheel INFO adding 'Bio/Entrez/DTDs/PRF_General.mod.dtd'
2025-04-29 19:25:33,998 wheel INFO adding 'Bio/Entrez/DTDs/SP_General.dtd'
2025-04-29 19:25:33,998 wheel INFO adding 'Bio/Entrez/DTDs/SP_General.mod.dtd'
2025-04-29 19:25:33,999 wheel INFO adding 'Bio/Entrez/DTDs/XHTMLtablesetup.ent'
2025-04-29 19:25:33,999 wheel INFO adding 'Bio/Entrez/DTDs/archivearticle.dtd'
2025-04-29 19:25:33,999 wheel INFO adding 'Bio/Entrez/DTDs/archivecustom-classes.ent'
2025-04-29 19:25:34,000 wheel INFO adding 'Bio/Entrez/DTDs/archivecustom-mixes.ent'
2025-04-29 19:25:34,000 wheel INFO adding 'Bio/Entrez/DTDs/archivecustom-models.ent'
2025-04-29 19:25:34,000 wheel INFO adding 'Bio/Entrez/DTDs/archivecustom-modules.ent'
2025-04-29 19:25:34,001 wheel INFO adding 'Bio/Entrez/DTDs/articlemeta.ent'
2025-04-29 19:25:34,001 wheel INFO adding 'Bio/Entrez/DTDs/backmatter.ent'
2025-04-29 19:25:34,002 wheel INFO adding 'Bio/Entrez/DTDs/bookdoc_100301.dtd'
2025-04-29 19:25:34,002 wheel INFO adding 'Bio/Entrez/DTDs/bookdoc_110101.dtd'
2025-04-29 19:25:34,002 wheel INFO adding 'Bio/Entrez/DTDs/bookdoc_120101.dtd'
2025-04-29 19:25:34,002 wheel INFO adding 'Bio/Entrez/DTDs/bookdoc_130101.dtd'
2025-04-29 19:25:34,002 wheel INFO adding 'Bio/Entrez/DTDs/bookdoc_140101.dtd'
2025-04-29 19:25:34,003 wheel INFO adding 'Bio/Entrez/DTDs/bookdoc_150101.dtd'
2025-04-29 19:25:34,003 wheel INFO adding 'Bio/Entrez/DTDs/chars.ent'
2025-04-29 19:25:34,004 wheel INFO adding 'Bio/Entrez/DTDs/common.ent'
2025-04-29 19:25:34,004 wheel INFO adding 'Bio/Entrez/DTDs/default-classes.ent'
2025-04-29 19:25:34,004 wheel INFO adding 'Bio/Entrez/DTDs/default-mixes.ent'
2025-04-29 19:25:34,005 wheel INFO adding 'Bio/Entrez/DTDs/display.ent'
2025-04-29 19:25:34,005 wheel INFO adding 'Bio/Entrez/DTDs/eInfo_020511.dtd'
2025-04-29 19:25:34,006 wheel INFO adding 'Bio/Entrez/DTDs/eLink_090910.dtd'
2025-04-29 19:25:34,006 wheel INFO adding 'Bio/Entrez/DTDs/eLink_101123.dtd'
2025-04-29 19:25:34,006 wheel INFO adding 'Bio/Entrez/DTDs/ePost_020511.dtd'
2025-04-29 19:25:34,006 wheel INFO adding 'Bio/Entrez/DTDs/eSearch_020511.dtd'
2025-04-29 19:25:34,006 wheel INFO adding 'Bio/Entrez/DTDs/eSpell.dtd'
2025-04-29 19:25:34,007 wheel INFO adding 'Bio/Entrez/DTDs/eSummary_041029.dtd'
2025-04-29 19:25:34,007 wheel INFO adding 'Bio/Entrez/DTDs/egquery.dtd'
2025-04-29 19:25:34,007 wheel INFO adding 'Bio/Entrez/DTDs/einfo.dtd'
2025-04-29 19:25:34,007 wheel INFO adding 'Bio/Entrez/DTDs/elink.dtd'
2025-04-29 19:25:34,007 wheel INFO adding 'Bio/Entrez/DTDs/elink_020122.dtd'
2025-04-29 19:25:34,007 wheel INFO adding 'Bio/Entrez/DTDs/epost.dtd'
2025-04-29 19:25:34,008 wheel INFO adding 'Bio/Entrez/DTDs/esearch.dtd'
2025-04-29 19:25:34,008 wheel INFO adding 'Bio/Entrez/DTDs/esummary-v1.dtd'
2025-04-29 19:25:34,008 wheel INFO adding 'Bio/Entrez/DTDs/esummary_clinvar.dtd'
2025-04-29 19:25:34,008 wheel INFO adding 'Bio/Entrez/DTDs/esummary_gene.dtd'
2025-04-29 19:25:34,009 wheel INFO adding 'Bio/Entrez/DTDs/format.ent'
2025-04-29 19:25:34,009 wheel INFO adding 'Bio/Entrez/DTDs/htmltable.dtd'
2025-04-29 19:25:34,009 wheel INFO adding 'Bio/Entrez/DTDs/isoamsa.ent'
2025-04-29 19:25:34,009 wheel INFO adding 'Bio/Entrez/DTDs/isoamsb.ent'
2025-04-29 19:25:34,010 wheel INFO adding 'Bio/Entrez/DTDs/isoamsc.ent'
2025-04-29 19:25:34,010 wheel INFO adding 'Bio/Entrez/DTDs/isoamsn.ent'
2025-04-29 19:25:34,010 wheel INFO adding 'Bio/Entrez/DTDs/isoamso.ent'
2025-04-29 19:25:34,010 wheel INFO adding 'Bio/Entrez/DTDs/isoamsr.ent'
2025-04-29 19:25:34,011 wheel INFO adding 'Bio/Entrez/DTDs/isobox.ent'
2025-04-29 19:25:34,011 wheel INFO adding 'Bio/Entrez/DTDs/isocyr1.ent'
2025-04-29 19:25:34,011 wheel INFO adding 'Bio/Entrez/DTDs/isocyr2.ent'
2025-04-29 19:25:34,011 wheel INFO adding 'Bio/Entrez/DTDs/isodia.ent'
2025-04-29 19:25:34,011 wheel INFO adding 'Bio/Entrez/DTDs/isogrk1.ent'
2025-04-29 19:25:34,012 wheel INFO adding 'Bio/Entrez/DTDs/isogrk2.ent'
2025-04-29 19:25:34,012 wheel INFO adding 'Bio/Entrez/DTDs/isogrk3.ent'
2025-04-29 19:25:34,012 wheel INFO adding 'Bio/Entrez/DTDs/isogrk4.ent'
2025-04-29 19:25:34,012 wheel INFO adding 'Bio/Entrez/DTDs/isolat1.ent'
2025-04-29 19:25:34,013 wheel INFO adding 'Bio/Entrez/DTDs/isolat2.ent'
2025-04-29 19:25:34,013 wheel INFO adding 'Bio/Entrez/DTDs/isomfrk.ent'
2025-04-29 19:25:34,013 wheel INFO adding 'Bio/Entrez/DTDs/isomopf.ent'
2025-04-29 19:25:34,013 wheel INFO adding 'Bio/Entrez/DTDs/isomscr.ent'
2025-04-29 19:25:34,014 wheel INFO adding 'Bio/Entrez/DTDs/isonum.ent'
2025-04-29 19:25:34,014 wheel INFO adding 'Bio/Entrez/DTDs/isopub.ent'
2025-04-29 19:25:34,014 wheel INFO adding 'Bio/Entrez/DTDs/isotech.ent'
2025-04-29 19:25:34,014 wheel INFO adding 'Bio/Entrez/DTDs/journalmeta.ent'
2025-04-29 19:25:34,015 wheel INFO adding 'Bio/Entrez/DTDs/link.ent'
2025-04-29 19:25:34,015 wheel INFO adding 'Bio/Entrez/DTDs/list.ent'
2025-04-29 19:25:34,015 wheel INFO adding 'Bio/Entrez/DTDs/math.ent'
2025-04-29 19:25:34,016 wheel INFO adding 'Bio/Entrez/DTDs/mathml-in-pubmed.mod'
2025-04-29 19:25:34,016 wheel INFO adding 'Bio/Entrez/DTDs/mathml2-qname-1.mod'
2025-04-29 19:25:34,016 wheel INFO adding 'Bio/Entrez/DTDs/mathml2.dtd'
2025-04-29 19:25:34,017 wheel INFO adding 'Bio/Entrez/DTDs/mathml3-qname1.mod'
2025-04-29 19:25:34,017 wheel INFO adding 'Bio/Entrez/DTDs/mathml3.dtd'
2025-04-29 19:25:34,017 wheel INFO adding 'Bio/Entrez/DTDs/mathmlsetup.ent'
2025-04-29 19:25:34,017 wheel INFO adding 'Bio/Entrez/DTDs/mmlalias.ent'
2025-04-29 19:25:34,018 wheel INFO adding 'Bio/Entrez/DTDs/mmlextra.ent'
2025-04-29 19:25:34,018 wheel INFO adding 'Bio/Entrez/DTDs/modules.ent'
2025-04-29 19:25:34,018 wheel INFO adding 'Bio/Entrez/DTDs/nlm-articleset-2.0.dtd'
2025-04-29 19:25:34,019 wheel INFO adding 'Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd'
2025-04-29 19:25:34,019 wheel INFO adding 'Bio/Entrez/DTDs/nlmcommon_011101.dtd'
2025-04-29 19:25:34,020 wheel INFO adding 'Bio/Entrez/DTDs/nlmcommon_080101.dtd'
2025-04-29 19:25:34,020 wheel INFO adding 'Bio/Entrez/DTDs/nlmcommon_090101.dtd'
2025-04-29 19:25:34,020 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedline_011101.dtd'
2025-04-29 19:25:34,020 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedline_080101.dtd'
2025-04-29 19:25:34,020 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedline_090101.dtd'
2025-04-29 19:25:34,021 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd'
2025-04-29 19:25:34,021 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd'
2025-04-29 19:25:34,021 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd'
2025-04-29 19:25:34,021 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd'
2025-04-29 19:25:34,022 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd'
2025-04-29 19:25:34,022 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd'
2025-04-29 19:25:34,022 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd'
2025-04-29 19:25:34,022 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd'
2025-04-29 19:25:34,023 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd'
2025-04-29 19:25:34,023 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd'
2025-04-29 19:25:34,023 wheel INFO adding 'Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd'
2025-04-29 19:25:34,023 wheel INFO adding 'Bio/Entrez/DTDs/nlmserials_080101.dtd'
2025-04-29 19:25:34,024 wheel INFO adding 'Bio/Entrez/DTDs/nlmserials_100101.dtd'
2025-04-29 19:25:34,024 wheel INFO adding 'Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd'
2025-04-29 19:25:34,024 wheel INFO adding 'Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd'
2025-04-29 19:25:34,024 wheel INFO adding 'Bio/Entrez/DTDs/notat.ent'
2025-04-29 19:25:34,024 wheel INFO adding 'Bio/Entrez/DTDs/para.ent'
2025-04-29 19:25:34,025 wheel INFO adding 'Bio/Entrez/DTDs/phrase.ent'
2025-04-29 19:25:34,025 wheel INFO adding 'Bio/Entrez/DTDs/pmc-1.dtd'
2025-04-29 19:25:34,025 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_020114.dtd'
2025-04-29 19:25:34,026 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_080101.dtd'
2025-04-29 19:25:34,026 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_090101.dtd'
2025-04-29 19:25:34,026 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_100101.dtd'
2025-04-29 19:25:34,026 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_100301.dtd'
2025-04-29 19:25:34,026 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_110101.dtd'
2025-04-29 19:25:34,027 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_120101.dtd'
2025-04-29 19:25:34,027 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_130101.dtd'
2025-04-29 19:25:34,027 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_130501.dtd'
2025-04-29 19:25:34,027 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_140101.dtd'
2025-04-29 19:25:34,028 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_150101.dtd'
2025-04-29 19:25:34,028 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_180101.dtd'
2025-04-29 19:25:34,028 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_180601.dtd'
2025-04-29 19:25:34,028 wheel INFO adding 'Bio/Entrez/DTDs/pubmed_190101.dtd'
2025-04-29 19:25:34,029 wheel INFO adding 'Bio/Entrez/DTDs/references.ent'
2025-04-29 19:25:34,029 wheel INFO adding 'Bio/Entrez/DTDs/section.ent'
2025-04-29 19:25:34,029 wheel INFO adding 'Bio/Entrez/DTDs/taxon.dtd'
2025-04-29 19:25:34,029 wheel INFO adding 'Bio/Entrez/DTDs/xhtml-inlstyle-1.mod'
2025-04-29 19:25:34,030 wheel INFO adding 'Bio/Entrez/DTDs/xhtml-table-1.mod'
2025-04-29 19:25:34,030 wheel INFO adding 'Bio/Entrez/DTDs/xmlspecchars.ent'
2025-04-29 19:25:34,030 wheel INFO adding 'Bio/Entrez/XSDs/IPGReportSet.xsd'
2025-04-29 19:25:34,030 wheel INFO adding 'Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd'
2025-04-29 19:25:34,031 wheel INFO adding 'Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd'
2025-04-29 19:25:34,031 wheel INFO adding 'Bio/ExPASy/Enzyme.py'
2025-04-29 19:25:34,031 wheel INFO adding 'Bio/ExPASy/Prodoc.py'
2025-04-29 19:25:34,031 wheel INFO adding 'Bio/ExPASy/Prosite.py'
2025-04-29 19:25:34,031 wheel INFO adding 'Bio/ExPASy/ScanProsite.py'
2025-04-29 19:25:34,032 wheel INFO adding 'Bio/ExPASy/__init__.py'
2025-04-29 19:25:34,032 wheel INFO adding 'Bio/ExPASy/cellosaurus.py'
2025-04-29 19:25:34,032 wheel INFO adding 'Bio/GenBank/Record.py'
2025-04-29 19:25:34,033 wheel INFO adding 'Bio/GenBank/Scanner.py'
2025-04-29 19:25:34,033 wheel INFO adding 'Bio/GenBank/__init__.py'
2025-04-29 19:25:34,034 wheel INFO adding 'Bio/GenBank/utils.py'
2025-04-29 19:25:34,034 wheel INFO adding 'Bio/Geo/Record.py'
2025-04-29 19:25:34,034 wheel INFO adding 'Bio/Geo/__init__.py'
2025-04-29 19:25:34,034 wheel INFO adding 'Bio/Graphics/BasicChromosome.py'
2025-04-29 19:25:34,035 wheel INFO adding 'Bio/Graphics/ColorSpiral.py'
2025-04-29 19:25:34,035 wheel INFO adding 'Bio/Graphics/Comparative.py'
2025-04-29 19:25:34,035 wheel INFO adding 'Bio/Graphics/DisplayRepresentation.py'
2025-04-29 19:25:34,035 wheel INFO adding 'Bio/Graphics/Distribution.py'
2025-04-29 19:25:34,036 wheel INFO adding 'Bio/Graphics/KGML_vis.py'
2025-04-29 19:25:34,036 wheel INFO adding 'Bio/Graphics/__init__.py'
2025-04-29 19:25:34,036 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_AbstractDrawer.py'
2025-04-29 19:25:34,036 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_CircularDrawer.py'
2025-04-29 19:25:34,037 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_Colors.py'
2025-04-29 19:25:34,037 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_CrossLink.py'
2025-04-29 19:25:34,037 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_Diagram.py'
2025-04-29 19:25:34,037 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_Feature.py'
2025-04-29 19:25:34,038 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_FeatureSet.py'
2025-04-29 19:25:34,038 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_Graph.py'
2025-04-29 19:25:34,038 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_GraphSet.py'
2025-04-29 19:25:34,039 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_LinearDrawer.py'
2025-04-29 19:25:34,039 wheel INFO adding 'Bio/Graphics/GenomeDiagram/_Track.py'
2025-04-29 19:25:34,039 wheel INFO adding 'Bio/Graphics/GenomeDiagram/__init__.py'
2025-04-29 19:25:34,039 wheel INFO adding 'Bio/HMM/DynamicProgramming.py'
2025-04-29 19:25:34,040 wheel INFO adding 'Bio/HMM/MarkovModel.py'
2025-04-29 19:25:34,040 wheel INFO adding 'Bio/HMM/Trainer.py'
2025-04-29 19:25:34,040 wheel INFO adding 'Bio/HMM/Utilities.py'
2025-04-29 19:25:34,040 wheel INFO adding 'Bio/HMM/__init__.py'
2025-04-29 19:25:34,041 wheel INFO adding 'Bio/KEGG/REST.py'
2025-04-29 19:25:34,041 wheel INFO adding 'Bio/KEGG/__init__.py'
2025-04-29 19:25:34,041 wheel INFO adding 'Bio/KEGG/Compound/__init__.py'
2025-04-29 19:25:34,041 wheel INFO adding 'Bio/KEGG/Enzyme/__init__.py'
2025-04-29 19:25:34,042 wheel INFO adding 'Bio/KEGG/Gene/__init__.py'
2025-04-29 19:25:34,042 wheel INFO adding 'Bio/KEGG/KGML/KGML_parser.py'
2025-04-29 19:25:34,042 wheel INFO adding 'Bio/KEGG/KGML/KGML_pathway.py'
2025-04-29 19:25:34,042 wheel INFO adding 'Bio/KEGG/KGML/__init__.py'
2025-04-29 19:25:34,043 wheel INFO adding 'Bio/KEGG/Map/__init__.py'
2025-04-29 19:25:34,043 wheel INFO adding 'Bio/Medline/__init__.py'
2025-04-29 19:25:34,043 wheel INFO adding 'Bio/NMR/NOEtools.py'
2025-04-29 19:25:34,043 wheel INFO adding 'Bio/NMR/__init__.py'
2025-04-29 19:25:34,044 wheel INFO adding 'Bio/NMR/xpktools.py'
2025-04-29 19:25:34,044 wheel INFO adding 'Bio/Nexus/Nexus.py'
2025-04-29 19:25:34,044 wheel INFO adding 'Bio/Nexus/Nodes.py'
2025-04-29 19:25:34,045 wheel INFO adding 'Bio/Nexus/StandardData.py'
2025-04-29 19:25:34,045 wheel INFO adding 'Bio/Nexus/Trees.py'
2025-04-29 19:25:34,045 wheel INFO adding 'Bio/Nexus/__init__.py'
2025-04-29 19:25:34,045 wheel INFO adding 'Bio/Nexus/cnexus.c'
2025-04-29 19:25:34,046 wheel INFO adding 'Bio/Nexus/cnexus.cpython-312-x86_64-linux-musl.so'
2025-04-29 19:25:34,046 wheel INFO adding 'Bio/PDB/AbstractPropertyMap.py'
2025-04-29 19:25:34,046 wheel INFO adding 'Bio/PDB/Atom.py'
2025-04-29 19:25:34,047 wheel INFO adding 'Bio/PDB/Chain.py'
2025-04-29 19:25:34,047 wheel INFO adding 'Bio/PDB/DSSP.py'
2025-04-29 19:25:34,047 wheel INFO adding 'Bio/PDB/Dice.py'
2025-04-29 19:25:34,047 wheel INFO adding 'Bio/PDB/Entity.py'
2025-04-29 19:25:34,047 wheel INFO adding 'Bio/PDB/FragmentMapper.py'
2025-04-29 19:25:34,048 wheel INFO adding 'Bio/PDB/HSExposure.py'
2025-04-29 19:25:34,048 wheel INFO adding 'Bio/PDB/MMCIF2Dict.py'
2025-04-29 19:25:34,048 wheel INFO adding 'Bio/PDB/MMCIFParser.py'
2025-04-29 19:25:34,049 wheel INFO adding 'Bio/PDB/Model.py'
2025-04-29 19:25:34,049 wheel INFO adding 'Bio/PDB/NACCESS.py'
2025-04-29 19:25:34,049 wheel INFO adding 'Bio/PDB/NeighborSearch.py'
2025-04-29 19:25:34,049 wheel INFO adding 'Bio/PDB/PDBExceptions.py'
2025-04-29 19:25:34,049 wheel INFO adding 'Bio/PDB/PDBIO.py'
2025-04-29 19:25:34,050 wheel INFO adding 'Bio/PDB/PDBList.py'
2025-04-29 19:25:34,050 wheel INFO adding 'Bio/PDB/PDBMLParser.py'
2025-04-29 19:25:34,050 wheel INFO adding 'Bio/PDB/PDBParser.py'
2025-04-29 19:25:34,050 wheel INFO adding 'Bio/PDB/PICIO.py'
2025-04-29 19:25:34,051 wheel INFO adding 'Bio/PDB/PSEA.py'
2025-04-29 19:25:34,051 wheel INFO adding 'Bio/PDB/Polypeptide.py'
2025-04-29 19:25:34,051 wheel INFO adding 'Bio/PDB/Residue.py'
2025-04-29 19:25:34,052 wheel INFO adding 'Bio/PDB/ResidueDepth.py'
2025-04-29 19:25:34,052 wheel INFO adding 'Bio/PDB/SASA.py'
2025-04-29 19:25:34,052 wheel INFO adding 'Bio/PDB/SCADIO.py'
2025-04-29 19:25:34,052 wheel INFO adding 'Bio/PDB/Selection.py'
2025-04-29 19:25:34,053 wheel INFO adding 'Bio/PDB/Structure.py'
2025-04-29 19:25:34,053 wheel INFO adding 'Bio/PDB/StructureAlignment.py'
2025-04-29 19:25:34,053 wheel INFO adding 'Bio/PDB/StructureBuilder.py'
2025-04-29 19:25:34,053 wheel INFO adding 'Bio/PDB/Superimposer.py'
2025-04-29 19:25:34,053 wheel INFO adding 'Bio/PDB/__init__.py'
2025-04-29 19:25:34,054 wheel INFO adding 'Bio/PDB/_bcif_helper.cpython-312-x86_64-linux-musl.so'
2025-04-29 19:25:34,054 wheel INFO adding 'Bio/PDB/alphafold_db.py'
2025-04-29 19:25:34,054 wheel INFO adding 'Bio/PDB/bcifhelpermodule.c'
2025-04-29 19:25:34,054 wheel INFO adding 'Bio/PDB/binary_cif.py'
2025-04-29 19:25:34,055 wheel INFO adding 'Bio/PDB/ccealign.cpython-312-x86_64-linux-musl.so'
2025-04-29 19:25:34,055 wheel INFO adding 'Bio/PDB/ccealignmodule.c'
2025-04-29 19:25:34,055 wheel INFO adding 'Bio/PDB/cealign.py'
2025-04-29 19:25:34,056 wheel INFO adding 'Bio/PDB/ic_data.py'
2025-04-29 19:25:34,056 wheel INFO adding 'Bio/PDB/ic_rebuild.py'
2025-04-29 19:25:34,057 wheel INFO adding 'Bio/PDB/internal_coords.py'
2025-04-29 19:25:34,057 wheel INFO adding 'Bio/PDB/kdtrees.c'
2025-04-29 19:25:34,058 wheel INFO adding 'Bio/PDB/kdtrees.cpython-312-x86_64-linux-musl.so'
2025-04-29 19:25:34,058 wheel INFO adding 'Bio/PDB/mmcifio.py'
2025-04-29 19:25:34,058 wheel INFO adding 'Bio/PDB/parse_pdb_header.py'
2025-04-29 19:25:34,059 wheel INFO adding 'Bio/PDB/qcprot.py'
2025-04-29 19:25:34,059 wheel INFO adding 'Bio/PDB/vectors.py'
2025-04-29 19:25:34,059 wheel INFO adding 'Bio/PDB/mmtf/DefaultParser.py'
2025-04-29 19:25:34,059 wheel INFO adding 'Bio/PDB/mmtf/__init__.py'
2025-04-29 19:25:34,060 wheel INFO adding 'Bio/PDB/mmtf/mmtfio.py'
2025-04-29 19:25:34,060 wheel INFO adding 'Bio/Pathway/__init__.py'
2025-04-29 19:25:34,060 wheel INFO adding 'Bio/Pathway/Rep/Graph.py'
2025-04-29 19:25:34,060 wheel INFO adding 'Bio/Pathway/Rep/MultiGraph.py'
2025-04-29 19:25:34,061 wheel INFO adding 'Bio/Pathway/Rep/__init__.py'
2025-04-29 19:25:34,061 wheel INFO adding 'Bio/Phylo/BaseTree.py'
2025-04-29 19:25:34,061 wheel INFO adding 'Bio/Phylo/CDAO.py'
2025-04-29 19:25:34,061 wheel INFO adding 'Bio/Phylo/CDAOIO.py'
2025-04-29 19:25:34,062 wheel INFO adding 'Bio/Phylo/Consensus.py'
2025-04-29 19:25:34,062 wheel INFO adding 'Bio/Phylo/NeXML.py'
2025-04-29 19:25:34,062 wheel INFO adding 'Bio/Phylo/NeXMLIO.py'
2025-04-29 19:25:34,062 wheel INFO adding 'Bio/Phylo/Newick.py'
2025-04-29 19:25:34,063 wheel INFO adding 'Bio/Phylo/NewickIO.py'
2025-04-29 19:25:34,063 wheel INFO adding 'Bio/Phylo/NexusIO.py'
2025-04-29 19:25:34,063 wheel INFO adding 'Bio/Phylo/PhyloXML.py'
2025-04-29 19:25:34,064 wheel INFO adding 'Bio/Phylo/PhyloXMLIO.py'
2025-04-29 19:25:34,064 wheel INFO adding 'Bio/Phylo/TreeConstruction.py'
2025-04-29 19:25:34,064 wheel INFO adding 'Bio/Phylo/__init__.py'
2025-04-29 19:25:34,065 wheel INFO adding 'Bio/Phylo/_cdao_owl.py'
2025-04-29 19:25:34,065 wheel INFO adding 'Bio/Phylo/_io.py'
2025-04-29 19:25:34,065 wheel INFO adding 'Bio/Phylo/_utils.py'
2025-04-29 19:25:34,066 wheel INFO adding 'Bio/Phylo/Applications/_Fasttree.py'
2025-04-29 19:25:34,066 wheel INFO adding 'Bio/Phylo/Applications/_Phyml.py'
2025-04-29 19:25:34,066 wheel INFO adding 'Bio/Phylo/Applications/_Raxml.py'
2025-04-29 19:25:34,066 wheel INFO adding 'Bio/Phylo/Applications/__init__.py'
2025-04-29 19:25:34,067 wheel INFO adding 'Bio/Phylo/PAML/__init__.py'
2025-04-29 19:25:34,067 wheel INFO adding 'Bio/Phylo/PAML/_paml.py'
2025-04-29 19:25:34,067 wheel INFO adding 'Bio/Phylo/PAML/_parse_baseml.py'
2025-04-29 19:25:34,067 wheel INFO adding 'Bio/Phylo/PAML/_parse_codeml.py'
2025-04-29 19:25:34,068 wheel INFO adding 'Bio/Phylo/PAML/_parse_yn00.py'
2025-04-29 19:25:34,068 wheel INFO adding 'Bio/Phylo/PAML/baseml.py'
2025-04-29 19:25:34,068 wheel INFO adding 'Bio/Phylo/PAML/chi2.py'
2025-04-29 19:25:34,068 wheel INFO adding 'Bio/Phylo/PAML/codeml.py'
2025-04-29 19:25:34,069 wheel INFO adding 'Bio/Phylo/PAML/yn00.py'
2025-04-29 19:25:34,069 wheel INFO adding 'Bio/PopGen/__init__.py'
2025-04-29 19:25:34,069 wheel INFO adding 'Bio/PopGen/GenePop/Controller.py'
2025-04-29 19:25:34,069 wheel INFO adding 'Bio/PopGen/GenePop/EasyController.py'
2025-04-29 19:25:34,070 wheel INFO adding 'Bio/PopGen/GenePop/FileParser.py'
2025-04-29 19:25:34,070 wheel INFO adding 'Bio/PopGen/GenePop/LargeFileParser.py'
2025-04-29 19:25:34,070 wheel INFO adding 'Bio/PopGen/GenePop/__init__.py'
2025-04-29 19:25:34,070 wheel INFO adding 'Bio/Restriction/PrintFormat.py'
2025-04-29 19:25:34,071 wheel INFO adding 'Bio/Restriction/Restriction.py'
2025-04-29 19:25:34,072 wheel INFO adding 'Bio/Restriction/Restriction_Dictionary.py'
2025-04-29 19:25:34,074 wheel INFO adding 'Bio/Restriction/__init__.py'
2025-04-29 19:25:34,074 wheel INFO adding 'Bio/SCOP/Cla.py'
2025-04-29 19:25:34,074 wheel INFO adding 'Bio/SCOP/Des.py'
2025-04-29 19:25:34,074 wheel INFO adding 'Bio/SCOP/Dom.py'
2025-04-29 19:25:34,075 wheel INFO adding 'Bio/SCOP/Hie.py'
2025-04-29 19:25:34,075 wheel INFO adding 'Bio/SCOP/Raf.py'
2025-04-29 19:25:34,075 wheel INFO adding 'Bio/SCOP/Residues.py'
2025-04-29 19:25:34,075 wheel INFO adding 'Bio/SCOP/__init__.py'
2025-04-29 19:25:34,076 wheel INFO adding 'Bio/SVDSuperimposer/__init__.py'
2025-04-29 19:25:34,076 wheel INFO adding 'Bio/SearchIO/BlatIO.py'
2025-04-29 19:25:34,076 wheel INFO adding 'Bio/SearchIO/FastaIO.py'
2025-04-29 19:25:34,077 wheel INFO adding 'Bio/SearchIO/__init__.py'
2025-04-29 19:25:34,077 wheel INFO adding 'Bio/SearchIO/_index.py'
2025-04-29 19:25:34,077 wheel INFO adding 'Bio/SearchIO/_utils.py'
2025-04-29 19:25:34,077 wheel INFO adding 'Bio/SearchIO/BlastIO/__init__.py'
2025-04-29 19:25:34,078 wheel INFO adding 'Bio/SearchIO/BlastIO/blast_tab.py'
2025-04-29 19:25:34,078 wheel INFO adding 'Bio/SearchIO/BlastIO/blast_xml.py'
2025-04-29 19:25:34,078 wheel INFO adding 'Bio/SearchIO/ExonerateIO/__init__.py'
2025-04-29 19:25:34,079 wheel INFO adding 'Bio/SearchIO/ExonerateIO/_base.py'
2025-04-29 19:25:34,079 wheel INFO adding 'Bio/SearchIO/ExonerateIO/exonerate_cigar.py'
2025-04-29 19:25:34,079 wheel INFO adding 'Bio/SearchIO/ExonerateIO/exonerate_text.py'
2025-04-29 19:25:34,080 wheel INFO adding 'Bio/SearchIO/ExonerateIO/exonerate_vulgar.py'
2025-04-29 19:25:34,080 wheel INFO adding 'Bio/SearchIO/HHsuiteIO/__init__.py'
2025-04-29 19:25:34,080 wheel INFO adding 'Bio/SearchIO/HHsuiteIO/hhsuite2_text.py'
2025-04-29 19:25:34,080 wheel INFO adding 'Bio/SearchIO/HmmerIO/__init__.py'
2025-04-29 19:25:34,081 wheel INFO adding 'Bio/SearchIO/HmmerIO/_base.py'
2025-04-29 19:25:34,081 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer2_text.py'
2025-04-29 19:25:34,081 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer3_domtab.py'
2025-04-29 19:25:34,081 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer3_tab.py'
2025-04-29 19:25:34,082 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer3_text.py'
2025-04-29 19:25:34,082 wheel INFO adding 'Bio/SearchIO/InterproscanIO/__init__.py'
2025-04-29 19:25:34,082 wheel INFO adding 'Bio/SearchIO/InterproscanIO/interproscan_xml.py'
2025-04-29 19:25:34,082 wheel INFO adding 'Bio/SearchIO/_model/__init__.py'
2025-04-29 19:25:34,083 wheel INFO adding 'Bio/SearchIO/_model/_base.py'
2025-04-29 19:25:34,083 wheel INFO adding 'Bio/SearchIO/_model/hit.py'
2025-04-29 19:25:34,083 wheel INFO adding 'Bio/SearchIO/_model/hsp.py'
2025-04-29 19:25:34,083 wheel INFO adding 'Bio/SearchIO/_model/query.py'
2025-04-29 19:25:34,084 wheel INFO adding 'Bio/SeqIO/AbiIO.py'
2025-04-29 19:25:34,084 wheel INFO adding 'Bio/SeqIO/AceIO.py'
2025-04-29 19:25:34,084 wheel INFO adding 'Bio/SeqIO/FastaIO.py'
2025-04-29 19:25:34,085 wheel INFO adding 'Bio/SeqIO/GckIO.py'
2025-04-29 19:25:34,085 wheel INFO adding 'Bio/SeqIO/GfaIO.py'
2025-04-29 19:25:34,085 wheel INFO adding 'Bio/SeqIO/IgIO.py'
2025-04-29 19:25:34,085 wheel INFO adding 'Bio/SeqIO/InsdcIO.py'
2025-04-29 19:25:34,086 wheel INFO adding 'Bio/SeqIO/Interfaces.py'
2025-04-29 19:25:34,086 wheel INFO adding 'Bio/SeqIO/NibIO.py'
2025-04-29 19:25:34,086 wheel INFO adding 'Bio/SeqIO/PdbIO.py'
2025-04-29 19:25:34,087 wheel INFO adding 'Bio/SeqIO/PhdIO.py'
2025-04-29 19:25:34,087 wheel INFO adding 'Bio/SeqIO/PirIO.py'
2025-04-29 19:25:34,087 wheel INFO adding 'Bio/SeqIO/QualityIO.py'
2025-04-29 19:25:34,088 wheel INFO adding 'Bio/SeqIO/SeqXmlIO.py'
2025-04-29 19:25:34,088 wheel INFO adding 'Bio/SeqIO/SffIO.py'
2025-04-29 19:25:34,088 wheel INFO adding 'Bio/SeqIO/SnapGeneIO.py'
2025-04-29 19:25:34,089 wheel INFO adding 'Bio/SeqIO/SwissIO.py'
2025-04-29 19:25:34,089 wheel INFO adding 'Bio/SeqIO/TabIO.py'
2025-04-29 19:25:34,089 wheel INFO adding 'Bio/SeqIO/TwoBitIO.py'
2025-04-29 19:25:34,089 wheel INFO adding 'Bio/SeqIO/UniprotIO.py'
2025-04-29 19:25:34,090 wheel INFO adding 'Bio/SeqIO/XdnaIO.py'
2025-04-29 19:25:34,090 wheel INFO adding 'Bio/SeqIO/__init__.py'
2025-04-29 19:25:34,090 wheel INFO adding 'Bio/SeqIO/_index.py'
2025-04-29 19:25:34,091 wheel INFO adding 'Bio/SeqIO/_twoBitIO.c'
2025-04-29 19:25:34,091 wheel INFO adding 'Bio/SeqIO/_twoBitIO.cpython-312-x86_64-linux-musl.so'
2025-04-29 19:25:34,091 wheel INFO adding 'Bio/SeqUtils/CheckSum.py'
2025-04-29 19:25:34,091 wheel INFO adding 'Bio/SeqUtils/IsoelectricPoint.py'
2025-04-29 19:25:34,092 wheel INFO adding 'Bio/SeqUtils/MeltingTemp.py'
2025-04-29 19:25:34,092 wheel INFO adding 'Bio/SeqUtils/ProtParam.py'
2025-04-29 19:25:34,092 wheel INFO adding 'Bio/SeqUtils/ProtParamData.py'
2025-04-29 19:25:34,093 wheel INFO adding 'Bio/SeqUtils/__init__.py'
2025-04-29 19:25:34,093 wheel INFO adding 'Bio/SeqUtils/lcc.py'
2025-04-29 19:25:34,093 wheel INFO adding 'Bio/Sequencing/Ace.py'
2025-04-29 19:25:34,093 wheel INFO adding 'Bio/Sequencing/Phd.py'
2025-04-29 19:25:34,094 wheel INFO adding 'Bio/Sequencing/__init__.py'
2025-04-29 19:25:34,094 wheel INFO adding 'Bio/Sequencing/Applications/_Novoalign.py'
2025-04-29 19:25:34,094 wheel INFO adding 'Bio/Sequencing/Applications/__init__.py'
2025-04-29 19:25:34,094 wheel INFO adding 'Bio/Sequencing/Applications/_bwa.py'
2025-04-29 19:25:34,095 wheel INFO adding 'Bio/Sequencing/Applications/_samtools.py'
2025-04-29 19:25:34,095 wheel INFO adding 'Bio/SwissProt/KeyWList.py'
2025-04-29 19:25:34,095 wheel INFO adding 'Bio/SwissProt/__init__.py'
2025-04-29 19:25:34,096 wheel INFO adding 'Bio/TogoWS/__init__.py'
2025-04-29 19:25:34,096 wheel INFO adding 'Bio/UniGene/__init__.py'
2025-04-29 19:25:34,096 wheel INFO adding 'Bio/UniProt/GOA.py'
2025-04-29 19:25:34,096 wheel INFO adding 'Bio/UniProt/__init__.py'
2025-04-29 19:25:34,097 wheel INFO adding 'Bio/codonalign/__init__.py'
2025-04-29 19:25:34,097 wheel INFO adding 'Bio/codonalign/codonalignment.py'
2025-04-29 19:25:34,097 wheel INFO adding 'Bio/codonalign/codonseq.py'
2025-04-29 19:25:34,098 wheel INFO adding 'Bio/motifs/__init__.py'
2025-04-29 19:25:34,098 wheel INFO adding 'Bio/motifs/_pwm.c'
2025-04-29 19:25:34,098 wheel INFO adding 'Bio/motifs/_pwm.cpython-312-x86_64-linux-musl.so'
2025-04-29 19:25:34,099 wheel INFO adding 'Bio/motifs/alignace.py'
2025-04-29 19:25:34,099 wheel INFO adding 'Bio/motifs/clusterbuster.py'
2025-04-29 19:25:34,099 wheel INFO adding 'Bio/motifs/mast.py'
2025-04-29 19:25:34,099 wheel INFO adding 'Bio/motifs/matrix.py'
2025-04-29 19:25:34,099 wheel INFO adding 'Bio/motifs/meme.py'
2025-04-29 19:25:34,100 wheel INFO adding 'Bio/motifs/minimal.py'
2025-04-29 19:25:34,100 wheel INFO adding 'Bio/motifs/pfm.py'
2025-04-29 19:25:34,100 wheel INFO adding 'Bio/motifs/thresholds.py'
2025-04-29 19:25:34,100 wheel INFO adding 'Bio/motifs/transfac.py'
2025-04-29 19:25:34,101 wheel INFO adding 'Bio/motifs/xms.py'
2025-04-29 19:25:34,101 wheel INFO adding 'Bio/motifs/applications/__init__.py'
2025-04-29 19:25:34,101 wheel INFO adding 'Bio/motifs/applications/_xxmotif.py'
2025-04-29 19:25:34,101 wheel INFO adding 'Bio/motifs/jaspar/__init__.py'
2025-04-29 19:25:34,102 wheel INFO adding 'Bio/motifs/jaspar/db.py'
2025-04-29 19:25:34,102 wheel INFO adding 'Bio/phenotype/__init__.py'
2025-04-29 19:25:34,102 wheel INFO adding 'Bio/phenotype/phen_micro.py'
2025-04-29 19:25:34,103 wheel INFO adding 'Bio/phenotype/pm_fitting.py'
2025-04-29 19:25:34,103 wheel INFO adding 'BioSQL/BioSeq.py'
2025-04-29 19:25:34,103 wheel INFO adding 'BioSQL/BioSeqDatabase.py'
2025-04-29 19:25:34,103 wheel INFO adding 'BioSQL/DBUtils.py'
2025-04-29 19:25:34,104 wheel INFO adding 'BioSQL/Loader.py'
2025-04-29 19:25:34,104 wheel INFO adding 'BioSQL/__init__.py'
2025-04-29 19:25:34,104 wheel INFO adding 'BioSQL/py.typed'
2025-04-29 19:25:34,105 wheel INFO adding 'biopython-1.85.dist-info/licenses/LICENSE'
2025-04-29 19:25:34,105 wheel INFO adding 'biopython-1.85.dist-info/licenses/LICENSE.rst'
2025-04-29 19:25:34,105 wheel INFO adding 'biopython-1.85.dist-info/METADATA'
2025-04-29 19:25:34,105 wheel INFO adding 'biopython-1.85.dist-info/WHEEL'
2025-04-29 19:25:34,105 wheel INFO adding 'biopython-1.85.dist-info/top_level.txt'
2025-04-29 19:25:34,108 wheel INFO adding 'biopython-1.85.dist-info/RECORD'
2025-04-29 19:25:34,109 root INFO removing build/bdist.linux-x86_64/wheel
2025-04-29 19:25:34,124 gpep517 INFO The backend produced .dist/biopython-1.85-cp312-cp312-linux_x86_64.whl
biopython-1.85-cp312-cp312-linux_x86_64.whl
>>> py3-biopython: Entering fakeroot...
>>> py3-biopython-pyc*: Running split function pyc...
'usr/lib/python3.12/site-packages/BioSQL/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/BioSQL/__pycache__'
'usr/lib/python3.12/site-packages/Bio/phenotype/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/phenotype/__pycache__'
'usr/lib/python3.12/site-packages/Bio/motifs/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/__pycache__'
'usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__'
'usr/lib/python3.12/site-packages/Bio/motifs/applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/applications/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Medline/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Medline/__pycache__'
'usr/lib/python3.12/site-packages/Bio/HMM/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/HMM/__pycache__'
'usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__'
'usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Application/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Application/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__'
'usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__'
'usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Align/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/Applications/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Align/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Sequencing/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Sequencing/Applications/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Compass/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Compass/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Geo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Geo/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Blast/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Blast/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__'
'usr/lib/python3.12/site-packages/Bio/NMR/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/NMR/__pycache__'
'usr/lib/python3.12/site-packages/Bio/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/__pycache__'
'usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Affy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Affy/__pycache__'
'usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Phylo/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/Applications/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Data/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Data/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__'
'usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__'
>>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc...
>>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc
>>> py3-biopython*: Running postcheck for py3-biopython
>>> py3-biopython*: Preparing package py3-biopython...
>>> py3-biopython*: Stripping binaries
>>> py3-biopython-pyc*: Scanning shared objects
>>> py3-biopython*: Scanning shared objects
>>> py3-biopython-pyc*: Tracing dependencies...
	py3-numpy
	python3
	python3~3.12
>>> py3-biopython-pyc*: Package size: 6.4 MB
>>> py3-biopython-pyc*: Compressing data...
>>> py3-biopython-pyc*: Create checksum...
>>> py3-biopython-pyc*: Create py3-biopython-pyc-1.85-r0.apk
>>> py3-biopython*: Tracing dependencies...
	py3-numpy
	python3
	python3~3.12
	so:libc.musl-x86_64.so.1
>>> py3-biopython*: Package size: 11.2 MB
>>> py3-biopython*: Compressing data...
>>> py3-biopython*: Create checksum...
>>> py3-biopython*: Create py3-biopython-1.85-r0.apk
>>> py3-biopython: Build complete at Tue, 29 Apr 2025 19:25:37 +0000 elapsed time 0h 0m 20s
>>> py3-biopython: Cleaning up srcdir
>>> py3-biopython: Cleaning up pkgdir
>>> py3-biopython: Uninstalling dependencies...
(1/32) Purging .makedepends-py3-biopython (20250429.192518)
(2/32) Purging py3-gpep517-pyc (16-r0)
(3/32) Purging py3-gpep517 (16-r0)
(4/32) Purging py3-installer-pyc (0.7.0-r2)
(5/32) Purging py3-installer (0.7.0-r2)
(6/32) Purging py3-setuptools-pyc (77.0.3-r0)
(7/32) Purging py3-setuptools (77.0.3-r0)
(8/32) Purging py3-wheel-pyc (0.43.0-r0)
(9/32) Purging py3-wheel (0.43.0-r0)
(10/32) Purging py3-packaging-pyc (25.0-r0)
(11/32) Purging py3-packaging (25.0-r0)
(12/32) Purging py3-parsing-pyc (3.2.0-r0)
(13/32) Purging py3-parsing (3.2.0-r0)
(14/32) Purging py3-numpy-dev (2.2.4-r0)
(15/32) Purging py3-numpy-tests (2.2.4-r0)
(16/32) Purging py3-numpy-pyc (2.2.4-r0)
(17/32) Purging py3-numpy (2.2.4-r0)
(18/32) Purging openblas (0.3.28-r0)
(19/32) Purging python3-dev (3.12.10-r0)
(20/32) Purging python3-pyc (3.12.10-r0)
(21/32) Purging python3-pycache-pyc0 (3.12.10-r0)
(22/32) Purging pyc (3.12.10-r0)
(23/32) Purging python3 (3.12.10-r0)
(24/32) Purging gdbm (1.24-r0)
(25/32) Purging libbz2 (1.0.8-r6)
(26/32) Purging libffi (3.4.8-r0)
(27/32) Purging libgfortran (14.2.0-r5)
(28/32) Purging libpanelw (6.5_p20250412-r0)
(29/32) Purging libquadmath (14.2.0-r5)
(30/32) Purging mpdecimal (4.0.0-r0)
(31/32) Purging sqlite-libs (3.49.1-r1)
(32/32) Purging xz-libs (5.8.1-r0)
Executing busybox-1.37.0-r16.trigger
OK: 399 MiB in 103 packages
>>> py3-biopython: Updating the community/x86_64 repository index...
>>> py3-biopython: Signing the index...