>>> py3-rpy2: Building community/py3-rpy2 3.5.17-r0 (using abuild 3.15.0_rc3-r3) started Wed, 14 May 2025 16:52:34 +0000 >>> py3-rpy2: Validating /home/buildozer/aports/community/py3-rpy2/APKBUILD... >>> py3-rpy2: Analyzing dependencies... >>> py3-rpy2: Installing for build: build-base py3-cffi py3-numpy py3-tz py3-tzlocal py3-jinja2 R py3-gpep517 py3-setuptools py3-wheel python3-dev R-dev libdeflate-dev py3-pytest (1/131) Installing libbz2 (1.0.8-r6) (2/131) Installing libffi (3.4.8-r0) (3/131) Installing gdbm (1.24-r0) (4/131) Installing xz-libs (5.8.1-r0) (5/131) Installing mpdecimal (4.0.0-r0) (6/131) Installing libpanelw (6.5_p20250503-r0) (7/131) Installing sqlite-libs (3.49.2-r0) (8/131) Installing python3 (3.12.10-r0) (9/131) Installing python3-pycache-pyc0 (3.12.10-r0) (10/131) Installing pyc (3.12.10-r0) (11/131) Installing py3-cparser-pyc (2.22-r1) (12/131) Installing py3-cffi-pyc (1.17.1-r1) (13/131) Installing python3-pyc (3.12.10-r0) (14/131) Installing py3-cparser (2.22-r1) (15/131) Installing py3-cffi (1.17.1-r1) (16/131) Installing libquadmath (14.2.0-r6) (17/131) Installing libgfortran (14.2.0-r6) (18/131) Installing openblas (0.3.28-r0) (19/131) Installing py3-numpy (2.2.4-r0) (20/131) Installing py3-numpy-tests (2.2.4-r0) (21/131) Installing py3-numpy-pyc (2.2.4-r0) (22/131) Installing py3-tz (2025.2-r0) (23/131) Installing py3-tz-pyc (2025.2-r0) (24/131) Installing py3-attrs (25.3.0-r0) (25/131) Installing py3-attrs-pyc (25.3.0-r0) (26/131) Installing py3-tzdata (2025.2-r0) (27/131) Installing py3-tzdata-pyc (2025.2-r0) (28/131) Installing py3-tzlocal (5.3-r0) (29/131) Installing py3-tzlocal-pyc (5.3-r0) (30/131) Installing py3-markupsafe (3.0.2-r0) (31/131) Installing py3-markupsafe-pyc (3.0.2-r0) (32/131) Installing py3-jinja2 (3.1.6-r0) (33/131) Installing py3-jinja2-pyc (3.1.6-r0) (34/131) Installing R-mathlib (4.5.0-r0) (35/131) Installing tzdata (2025b-r0) (36/131) Installing libxau (1.0.12-r0) (37/131) Installing libmd (1.1.0-r0) (38/131) Installing libbsd (0.12.2-r0) (39/131) Installing libxdmcp (1.1.5-r1) (40/131) Installing libxcb (1.17.0-r0) (41/131) Installing libx11 (1.8.11-r0) (42/131) Installing libxext (1.3.6-r2) (43/131) Installing libice (1.1.2-r0) (44/131) Installing libuuid (2.41-r7) (45/131) Installing libsm (1.2.5-r0) (46/131) Installing libxt (1.3.1-r0) (47/131) Installing libxmu (1.2.1-r0) (48/131) Installing libxrender (0.9.12-r0) (49/131) Installing libpng (1.6.47-r0) (50/131) Installing freetype (2.13.3-r0) (51/131) Installing fontconfig (2.15.0-r3) (52/131) Installing pixman (0.46.0-r0) (53/131) Installing cairo (1.18.2-r1) (54/131) Installing libdeflate (1.23-r0) (55/131) Installing libintl (0.24.1-r0) (56/131) Installing libeconf (0.6.3-r0) (57/131) Installing libblkid (2.41-r7) (58/131) Installing libmount (2.41-r7) (59/131) Installing glib (2.84.1-r0) (60/131) Installing icu-data-en (76.1-r0) Executing icu-data-en-76.1-r0.post-install * * If you need ICU with non-English locales and legacy charset support, install * package icu-data-full. * (61/131) Installing icu-libs (76.1-r0) (62/131) Installing libjpeg-turbo (3.1.0-r0) (63/131) Installing libxft (2.3.8-r3) (64/131) Installing fribidi (1.0.16-r0) (65/131) Installing graphite2 (1.3.14-r6) (66/131) Installing harfbuzz (11.2.1-r0) (67/131) Installing pango (1.56.3-r0) (68/131) Installing tcl (8.6.16-r0) (69/131) Installing libsharpyuv (1.5.0-r0) (70/131) Installing libwebp (1.5.0-r0) (71/131) Installing tiff (4.7.0-r0) (72/131) Installing tk (8.6.16-r0) (73/131) Installing R (4.5.0-r0) Executing R-4.5.0-r0.post-install * * If you want to install R packages from CRAN that contains native extensions, * then you must also install R-dev. * * To avoid warnings about R.css when installing R extensions also install R-doc. * (74/131) Installing py3-installer (0.7.0-r2) (75/131) Installing py3-installer-pyc (0.7.0-r2) (76/131) Installing py3-gpep517 (19-r0) (77/131) Installing py3-gpep517-pyc (19-r0) (78/131) Installing py3-parsing (3.2.3-r0) (79/131) Installing py3-parsing-pyc (3.2.3-r0) (80/131) Installing py3-packaging (25.0-r0) (81/131) Installing py3-packaging-pyc (25.0-r0) (82/131) Installing py3-setuptools (80.5.0-r0) (83/131) Installing py3-setuptools-pyc (80.5.0-r0) (84/131) Installing py3-wheel (0.46.1-r0) (85/131) Installing py3-wheel-pyc (0.46.1-r0) (86/131) Installing python3-dev (3.12.10-r0) (87/131) Installing bzip2-dev (1.0.8-r6) (88/131) Installing brotli (1.1.0-r2) (89/131) Installing brotli-dev (1.1.0-r2) (90/131) Installing c-ares-dev (1.34.5-r0) (91/131) Installing libidn2-dev (2.3.7-r0) (92/131) Installing libpsl-utils (0.21.5-r3) (93/131) Installing libpsl-dev (0.21.5-r3) (94/131) Installing nghttp2-dev (1.65.0-r0) (95/131) Installing openssl-dev (3.5.0-r0) (96/131) Installing zlib-dev (1.3.1-r2) (97/131) Installing zstd (1.5.7-r0) (98/131) Installing zstd-dev (1.5.7-r0) (99/131) Installing curl-dev (8.13.0-r1) (100/131) Installing gfortran (14.2.0-r6) (101/131) Installing icu (76.1-r0) (102/131) Installing icu-dev (76.1-r0) (103/131) Installing libdeflate-dev (1.23-r0) (104/131) Installing libpng-dev (1.6.47-r0) (105/131) Installing liblapack (0.3.28-r0) (106/131) Installing liblapacke (0.3.28-r0) (107/131) Installing openblas-ilp64 (0.3.28-r0) (108/131) Installing openblas-dev (0.3.28-r0) (109/131) Installing bsd-compat-headers (0.7.2-r6) (110/131) Installing libformw (6.5_p20250503-r0) (111/131) Installing libmenuw (6.5_p20250503-r0) (112/131) Installing libncurses++ (6.5_p20250503-r0) (113/131) Installing ncurses-dev (6.5_p20250503-r0) (114/131) Installing libedit-dev (20250104.3.1-r0) (115/131) Installing libpcre2-16 (10.43-r1) (116/131) Installing libpcre2-32 (10.43-r1) (117/131) Installing pcre2-dev (10.43-r1) (118/131) Installing libhistory (8.2.13-r0) (119/131) Installing readline-dev (8.2.13-r0) (120/131) Installing xz (5.8.1-r0) (121/131) Installing xz-dev (5.8.1-r0) (122/131) Installing R-dev (4.5.0-r0) (123/131) Installing py3-iniconfig (2.1.0-r0) (124/131) Installing py3-iniconfig-pyc (2.1.0-r0) (125/131) Installing py3-pluggy (1.5.0-r0) (126/131) Installing py3-pluggy-pyc (1.5.0-r0) (127/131) Installing py3-py (1.11.0-r4) (128/131) Installing py3-py-pyc (1.11.0-r4) (129/131) Installing py3-pytest (8.3.5-r0) (130/131) Installing py3-pytest-pyc (8.3.5-r0) (131/131) Installing .makedepends-py3-rpy2 (20250514.165246) Executing busybox-1.37.0-r17.trigger Executing glib-2.84.1-r0.trigger OK: 739 MiB in 235 packages >>> py3-rpy2: Cleaning up srcdir >>> py3-rpy2: Cleaning up pkgdir >>> py3-rpy2: Cleaning up tmpdir >>> py3-rpy2: Fetching https://distfiles.alpinelinux.org/distfiles/v3.22/py3-rpy2-3.5.17.tar.gz Connecting to distfiles.alpinelinux.org (172.105.82.32:443) saving to '/var/cache/distfiles/v3.22/py3-rpy2-3.5.17.tar.gz.part' py3-rpy2-3.5.17.tar. 100% |********************************| 215k 0:00:00 ETA '/var/cache/distfiles/v3.22/py3-rpy2-3.5.17.tar.gz.part' saved >>> py3-rpy2: Fetching https://distfiles.alpinelinux.org/distfiles/v3.22/py3-rpy2-3.5.17.tar.gz >>> py3-rpy2: Checking sha512sums... py3-rpy2-3.5.17.tar.gz: OK >>> py3-rpy2: Unpacking /var/cache/distfiles/v3.22/py3-rpy2-3.5.17.tar.gz... 2025-05-14 16:52:49,468 gpep517 INFO Building wheel via backend setuptools.build_meta 2025-05-14 16:52:49,490 situation INFO R home found: /usr/lib/R 2025-05-14 16:52:49,490 situation INFO cffi mode is CFFI_MODE.ANY 2025-05-14 16:52:49,490 situation INFO R exec path: /usr/lib/R/bin/R 2025-05-14 16:52:49,517 situation INFO R exec path: /usr/lib/R/bin/R 2025-05-14 16:52:49,545 root INFO creating /tmp/tmp_pw_r_vp907uh3/tmp/tmp_pw_r_vp907uh3 2025-05-14 16:52:49,545 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/R -c /tmp/tmp_pw_r_vp907uh3/test_pw_r.c -o /tmp/tmp_pw_r_vp907uh3/tmp/tmp_pw_r_vp907uh3/test_pw_r.o 2025-05-14 16:52:49,578 root INFO cc /tmp/tmp_pw_r_vp907uh3/tmp/tmp_pw_r_vp907uh3/test_pw_r.o -L/usr/lib/R/lib -lR -lpcre2-8 -ldeflate -lzstd -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n -o /tmp/tmp_pw_r_vp907uh3/test_pw_r 2025-05-14 16:52:49,625 situation INFO cffi mode is CFFI_MODE.ANY 2025-05-14 16:52:49,699 situation INFO R home found: /usr/lib/R 2025-05-14 16:52:49,700 situation INFO R exec path: /usr/lib/R/bin/R 2025-05-14 16:52:49,728 situation INFO R exec path: /usr/lib/R/bin/R 2025-05-14 16:52:49,756 situation INFO R exec path: /usr/lib/R/bin/R 2025-05-14 16:52:49,779 situation INFO R exec path: /usr/lib/R/bin/R 2025-05-14 16:52:49,875 situation INFO cffi mode is CFFI_MODE.ANY 2025-05-14 16:52:49,925 situation INFO R home found: /usr/lib/R 2025-05-14 16:52:49,925 situation INFO R exec path: /usr/lib/R/bin/R 2025-05-14 16:52:49,949 situation INFO R exec path: /usr/lib/R/bin/R 2025-05-14 16:52:49,975 situation INFO R exec path: /usr/lib/R/bin/R 2025-05-14 16:52:49,997 situation INFO R exec path: /usr/lib/R/bin/R /usr/lib/python3.12/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3.12/site-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3.12/site-packages/setuptools/dist.py:761: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() 2025-05-14 16:52:50,157 root INFO running bdist_wheel 2025-05-14 16:52:50,169 root INFO running build 2025-05-14 16:52:50,169 root INFO running build_py 2025-05-14 16:52:50,169 root WARNING file _rinterface_cffi_abi.py (for module _rinterface_cffi_abi) not found 2025-05-14 16:52:50,170 root INFO creating build/lib.linux-x86_64-cpython-312/rpy2 2025-05-14 16:52:50,170 root INFO copying rpy2/rinterface.py -> build/lib.linux-x86_64-cpython-312/rpy2 2025-05-14 16:52:50,170 root INFO copying rpy2/situation.py -> build/lib.linux-x86_64-cpython-312/rpy2 2025-05-14 16:52:50,171 root INFO copying rpy2/__init__.py -> build/lib.linux-x86_64-cpython-312/rpy2 2025-05-14 16:52:50,171 root INFO copying rpy2/_rinterface_cffi_build.py -> build/lib.linux-x86_64-cpython-312/rpy2 2025-05-14 16:52:50,171 root INFO creating build/lib.linux-x86_64-cpython-312/rpy2/rlike 2025-05-14 16:52:50,172 root INFO copying rpy2/rlike/indexing.py -> build/lib.linux-x86_64-cpython-312/rpy2/rlike 2025-05-14 16:52:50,172 root INFO copying rpy2/rlike/functional.py -> build/lib.linux-x86_64-cpython-312/rpy2/rlike 2025-05-14 16:52:50,172 root INFO copying rpy2/rlike/container.py -> build/lib.linux-x86_64-cpython-312/rpy2/rlike 2025-05-14 16:52:50,172 root INFO copying rpy2/rlike/__init__.py -> build/lib.linux-x86_64-cpython-312/rpy2/rlike 2025-05-14 16:52:50,173 root INFO creating build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib 2025-05-14 16:52:50,173 root INFO copying rpy2/rinterface_lib/_rinterface_capi.py -> build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib 2025-05-14 16:52:50,173 root INFO copying rpy2/rinterface_lib/embedded.py -> build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib 2025-05-14 16:52:50,173 root INFO copying rpy2/rinterface_lib/embedded_mswin.py -> build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib 2025-05-14 16:52:50,174 root INFO copying rpy2/rinterface_lib/conversion.py -> build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib 2025-05-14 16:52:50,174 root INFO copying rpy2/rinterface_lib/openrlib.py -> build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib 2025-05-14 16:52:50,174 root INFO copying rpy2/rinterface_lib/callbacks.py -> build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib 2025-05-14 16:52:50,174 root INFO copying rpy2/rinterface_lib/ffi_proxy.py -> build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib 2025-05-14 16:52:50,175 root INFO copying rpy2/rinterface_lib/sexp.py -> build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib 2025-05-14 16:52:50,175 root INFO copying rpy2/rinterface_lib/__init__.py -> build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib 2025-05-14 16:52:50,175 root INFO copying rpy2/rinterface_lib/na_values.py -> build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib 2025-05-14 16:52:50,176 root INFO copying rpy2/rinterface_lib/memorymanagement.py -> build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib 2025-05-14 16:52:50,176 root INFO copying rpy2/rinterface_lib/bufferprotocol.py -> build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib 2025-05-14 16:52:50,177 root INFO creating build/lib.linux-x86_64-cpython-312/rpy2/robjects 2025-05-14 16:52:50,177 root INFO copying rpy2/robjects/vectors.py -> build/lib.linux-x86_64-cpython-312/rpy2/robjects 2025-05-14 16:52:50,177 root INFO copying rpy2/robjects/pandas2ri.py -> build/lib.linux-x86_64-cpython-312/rpy2/robjects 2025-05-14 16:52:50,177 root INFO copying rpy2/robjects/robject.py -> build/lib.linux-x86_64-cpython-312/rpy2/robjects 2025-05-14 16:52:50,178 root INFO copying rpy2/robjects/packages_utils.py -> build/lib.linux-x86_64-cpython-312/rpy2/robjects 2025-05-14 16:52:50,178 root INFO copying rpy2/robjects/conversion.py -> build/lib.linux-x86_64-cpython-312/rpy2/robjects 2025-05-14 16:52:50,178 root INFO copying rpy2/robjects/help.py -> build/lib.linux-x86_64-cpython-312/rpy2/robjects 2025-05-14 16:52:50,178 root INFO copying rpy2/robjects/methods.py -> build/lib.linux-x86_64-cpython-312/rpy2/robjects 2025-05-14 16:52:50,179 root INFO copying rpy2/robjects/constants.py -> build/lib.linux-x86_64-cpython-312/rpy2/robjects 2025-05-14 16:52:50,179 root INFO copying rpy2/robjects/packages.py -> build/lib.linux-x86_64-cpython-312/rpy2/robjects 2025-05-14 16:52:50,179 root INFO copying rpy2/robjects/__init__.py -> build/lib.linux-x86_64-cpython-312/rpy2/robjects 2025-05-14 16:52:50,179 root INFO copying rpy2/robjects/numpy2ri.py -> build/lib.linux-x86_64-cpython-312/rpy2/robjects 2025-05-14 16:52:50,180 root INFO copying rpy2/robjects/language.py -> build/lib.linux-x86_64-cpython-312/rpy2/robjects 2025-05-14 16:52:50,180 root INFO copying rpy2/robjects/functions.py -> build/lib.linux-x86_64-cpython-312/rpy2/robjects 2025-05-14 16:52:50,180 root INFO copying rpy2/robjects/environments.py -> build/lib.linux-x86_64-cpython-312/rpy2/robjects 2025-05-14 16:52:50,181 root INFO creating build/lib.linux-x86_64-cpython-312/rpy2/robjects/lib 2025-05-14 16:52:50,181 root INFO copying rpy2/robjects/lib/dbplyr.py -> build/lib.linux-x86_64-cpython-312/rpy2/robjects/lib 2025-05-14 16:52:50,181 root INFO copying rpy2/robjects/lib/ggplot2.py -> build/lib.linux-x86_64-cpython-312/rpy2/robjects/lib 2025-05-14 16:52:50,181 root INFO copying rpy2/robjects/lib/__init__.py -> build/lib.linux-x86_64-cpython-312/rpy2/robjects/lib 2025-05-14 16:52:50,181 root INFO copying rpy2/robjects/lib/tidyr.py -> build/lib.linux-x86_64-cpython-312/rpy2/robjects/lib 2025-05-14 16:52:50,182 root INFO copying rpy2/robjects/lib/dplyr.py -> build/lib.linux-x86_64-cpython-312/rpy2/robjects/lib 2025-05-14 16:52:50,182 root INFO copying rpy2/robjects/lib/grid.py -> build/lib.linux-x86_64-cpython-312/rpy2/robjects/lib 2025-05-14 16:52:50,182 root INFO copying rpy2/robjects/lib/grdevices.py -> build/lib.linux-x86_64-cpython-312/rpy2/robjects/lib 2025-05-14 16:52:50,183 root INFO creating build/lib.linux-x86_64-cpython-312/rpy2/interactive 2025-05-14 16:52:50,183 root INFO copying rpy2/interactive/process_revents.py -> build/lib.linux-x86_64-cpython-312/rpy2/interactive 2025-05-14 16:52:50,183 root INFO copying rpy2/interactive/packages.py -> build/lib.linux-x86_64-cpython-312/rpy2/interactive 2025-05-14 16:52:50,183 root INFO copying rpy2/interactive/__init__.py -> build/lib.linux-x86_64-cpython-312/rpy2/interactive 2025-05-14 16:52:50,184 root INFO creating build/lib.linux-x86_64-cpython-312/rpy2/ipython 2025-05-14 16:52:50,184 root INFO copying rpy2/ipython/rmagic.py -> build/lib.linux-x86_64-cpython-312/rpy2/ipython 2025-05-14 16:52:50,184 root INFO copying rpy2/ipython/ggplot.py -> build/lib.linux-x86_64-cpython-312/rpy2/ipython 2025-05-14 16:52:50,184 root INFO copying rpy2/ipython/__init__.py -> build/lib.linux-x86_64-cpython-312/rpy2/ipython 2025-05-14 16:52:50,184 root INFO copying rpy2/ipython/html.py -> build/lib.linux-x86_64-cpython-312/rpy2/ipython 2025-05-14 16:52:50,185 root INFO creating build/lib.linux-x86_64-cpython-312/rpy2/tests 2025-05-14 16:52:50,185 root INFO copying rpy2/tests/utils.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests 2025-05-14 16:52:50,185 root INFO copying rpy2/tests/__init__.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests 2025-05-14 16:52:50,186 root INFO creating build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,186 root INFO copying rpy2/tests/rinterface/test_vector_int.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,186 root INFO copying rpy2/tests/rinterface/test_noinitialization.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,186 root INFO copying rpy2/tests/rinterface/test_vector_list.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,187 root INFO copying rpy2/tests/rinterface/test_functions.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,187 root INFO copying rpy2/tests/rinterface/test_embedded_r.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,187 root INFO copying rpy2/tests/rinterface/test_environment.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,187 root INFO copying rpy2/tests/rinterface/test_sexp.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,188 root INFO copying rpy2/tests/rinterface/test_vector_str.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,188 root INFO copying rpy2/tests/rinterface/test_conversion.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,188 root INFO copying rpy2/tests/rinterface/test_vector_numpy.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,188 root INFO copying rpy2/tests/rinterface/test_bufferprotocol.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,189 root INFO copying rpy2/tests/rinterface/test_vector_byte.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,189 root INFO copying rpy2/tests/rinterface/test_symbol.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,189 root INFO copying rpy2/tests/rinterface/test_openrlib.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,189 root INFO copying rpy2/tests/rinterface/test_vector_lang.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,190 root INFO copying rpy2/tests/rinterface/test_na.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,190 root INFO copying rpy2/tests/rinterface/test_vector_pairlist.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,190 root INFO copying rpy2/tests/rinterface/test_callbacks.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,190 root INFO copying rpy2/tests/rinterface/test_memorymanagement.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,191 root INFO copying rpy2/tests/rinterface/test_vector_bool.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,191 root INFO copying rpy2/tests/rinterface/test_externalptr.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,191 root INFO copying rpy2/tests/rinterface/test_vector_float.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,191 root INFO copying rpy2/tests/rinterface/test_vector_complex.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,192 root INFO copying rpy2/tests/rinterface/__init__.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,192 root INFO copying rpy2/tests/rinterface/test_threading.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,192 root INFO copying rpy2/tests/rinterface/test_vectors.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,192 root INFO copying rpy2/tests/rinterface/test_endr.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface 2025-05-14 16:52:50,193 root INFO creating build/lib.linux-x86_64-cpython-312/rpy2/tests/rlike 2025-05-14 16:52:50,193 root INFO copying rpy2/tests/rlike/test_container.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rlike 2025-05-14 16:52:50,193 root INFO copying rpy2/tests/rlike/test_indexing.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rlike 2025-05-14 16:52:50,193 root INFO copying rpy2/tests/rlike/test_functional.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/rlike 2025-05-14 16:52:50,194 root INFO creating build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects 2025-05-14 16:52:50,194 root INFO copying rpy2/tests/robjects/test_function.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects 2025-05-14 16:52:50,194 root INFO copying rpy2/tests/robjects/test_environment.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects 2025-05-14 16:52:50,194 root INFO copying rpy2/tests/robjects/test_conversion_numpy.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects 2025-05-14 16:52:50,195 root INFO copying rpy2/tests/robjects/test_conversion.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects 2025-05-14 16:52:50,195 root INFO copying rpy2/tests/robjects/test_methods.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects 2025-05-14 16:52:50,195 root INFO copying rpy2/tests/robjects/test_vector.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects 2025-05-14 16:52:50,195 root INFO copying rpy2/tests/robjects/test_language.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects 2025-05-14 16:52:50,196 root INFO copying rpy2/tests/robjects/test_vector_factor.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects 2025-05-14 16:52:50,196 root INFO copying rpy2/tests/robjects/test_help.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects 2025-05-14 16:52:50,196 root INFO copying rpy2/tests/robjects/test_formula.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects 2025-05-14 16:52:50,196 root INFO copying rpy2/tests/robjects/test_dataframe.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects 2025-05-14 16:52:50,197 root INFO copying rpy2/tests/robjects/test_robjects.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects 2025-05-14 16:52:50,197 root INFO copying rpy2/tests/robjects/test_serialization.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects 2025-05-14 16:52:50,197 root INFO copying rpy2/tests/robjects/test_vector_extractdelegator.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects 2025-05-14 16:52:50,197 root INFO copying rpy2/tests/robjects/test_translated_function.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects 2025-05-14 16:52:50,198 root INFO copying rpy2/tests/robjects/test_pandas_conversions.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects 2025-05-14 16:52:50,198 root INFO copying rpy2/tests/robjects/__init__.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects 2025-05-14 16:52:50,198 root INFO copying rpy2/tests/robjects/test_packages.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects 2025-05-14 16:52:50,198 root INFO copying rpy2/tests/robjects/test_vector_datetime.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects 2025-05-14 16:52:50,199 root INFO copying rpy2/tests/robjects/test_rs4.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects 2025-05-14 16:52:50,199 root INFO copying rpy2/tests/robjects/test_array.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects 2025-05-14 16:52:50,199 root INFO copying rpy2/tests/robjects/test_packages_utils.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects 2025-05-14 16:52:50,200 root INFO creating build/lib.linux-x86_64-cpython-312/rpy2/tests/ipython 2025-05-14 16:52:50,200 root INFO copying rpy2/tests/ipython/test_ggplot.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/ipython 2025-05-14 16:52:50,200 root INFO copying rpy2/tests/ipython/test_rmagic.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/ipython 2025-05-14 16:52:50,200 root INFO copying rpy2/tests/ipython/__init__.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/ipython 2025-05-14 16:52:50,200 root INFO copying rpy2/tests/ipython/test_html.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/ipython 2025-05-14 16:52:50,201 root INFO creating build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/lib 2025-05-14 16:52:50,201 root INFO copying rpy2/tests/robjects/lib/test_dplyr.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/lib 2025-05-14 16:52:50,201 root INFO copying rpy2/tests/robjects/lib/test_grdevices.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/lib 2025-05-14 16:52:50,202 root INFO copying rpy2/tests/robjects/lib/test_ggplot2.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/lib 2025-05-14 16:52:50,202 root INFO copying rpy2/tests/robjects/lib/test_grid.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/lib 2025-05-14 16:52:50,202 root INFO copying rpy2/tests/robjects/lib/__init__.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/lib 2025-05-14 16:52:50,202 root INFO copying rpy2/tests/robjects/lib/test_dbplyr.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/lib 2025-05-14 16:52:50,202 root INFO copying rpy2/tests/robjects/lib/test_tidyr.py -> build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/lib 2025-05-14 16:52:50,203 root INFO running egg_info 2025-05-14 16:52:50,207 root INFO writing rpy2.egg-info/PKG-INFO 2025-05-14 16:52:50,213 root INFO writing dependency_links to rpy2.egg-info/dependency_links.txt 2025-05-14 16:52:50,216 root INFO writing requirements to rpy2.egg-info/requires.txt 2025-05-14 16:52:50,217 root INFO writing top-level names to rpy2.egg-info/top_level.txt 2025-05-14 16:52:50,225 root INFO reading manifest file 'rpy2.egg-info/SOURCES.txt' 2025-05-14 16:52:50,227 root INFO reading manifest template 'MANIFEST.in' 2025-05-14 16:52:50,234 root WARNING warning: no files found matching 'README' anywhere in distribution 2025-05-14 16:52:50,234 root WARNING warning: no previously-included files matching '*patch*' found anywhere in distribution 2025-05-14 16:52:50,234 root WARNING warning: no previously-included files matching '*diff*' found anywhere in distribution 2025-05-14 16:52:50,235 root WARNING warning: no previously-included files matching '.hg' found anywhere in distribution 2025-05-14 16:52:50,235 root WARNING warning: no files found matching 'MANIFEST' 2025-05-14 16:52:50,235 root WARNING warning: no files found matching '_rinterface_cffi_build' 2025-05-14 16:52:50,235 root WARNING warning: no files found matching 'rpy/__init__.py' 2025-05-14 16:52:50,235 root WARNING warning: no files found matching 'rpy/situation.py' 2025-05-14 16:52:50,235 root WARNING warning: no files found matching '*.py' under directory 'rpy/robjects' 2025-05-14 16:52:50,236 root WARNING warning: no files found matching '*.py' under directory 'rpy/ipython' 2025-05-14 16:52:50,236 root WARNING warning: no files found matching '*.py' under directory 'rpy/interactive' 2025-05-14 16:52:50,236 root WARNING warning: no files found matching '*.py' under directory 'rpy/rlike' 2025-05-14 16:52:50,236 root WARNING no previously-included directories found matching 'dist' 2025-05-14 16:52:50,236 root WARNING warning: no files found matching 'doc/source/rpy2_logo.png' 2025-05-14 16:52:50,236 root INFO adding license file 'LICENSE' 2025-05-14 16:52:50,236 root INFO adding license file 'AUTHORS' 2025-05-14 16:52:50,239 root INFO writing manifest file 'rpy2.egg-info/SOURCES.txt' 2025-05-14 16:52:50,241 root INFO copying rpy2/rinterface_lib/R_API.h -> build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib 2025-05-14 16:52:50,241 root INFO copying rpy2/rinterface_lib/R_API_eventloop.h -> build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib 2025-05-14 16:52:50,241 root INFO copying rpy2/rinterface_lib/R_API_eventloop.c -> build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib 2025-05-14 16:52:50,242 root INFO copying rpy2/rinterface_lib/RPY2.h -> build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib 2025-05-14 16:52:50,242 root INFO copying rpy2/rinterface_lib/_bufferprotocol.c -> build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib 2025-05-14 16:52:50,243 root WARNING file _rinterface_cffi_abi.py (for module _rinterface_cffi_abi) not found 2025-05-14 16:52:50,244 root INFO generating cffi module 'build/lib.linux-x86_64-cpython-312/_rinterface_cffi_abi.py' 2025-05-14 16:52:50,253 root INFO running build_ext 2025-05-14 16:52:50,253 root INFO generating cffi module 'build/temp.linux-x86_64-cpython-312/_rinterface_cffi_api.c' 2025-05-14 16:52:50,253 root INFO creating build/temp.linux-x86_64-cpython-312 2025-05-14 16:52:50,270 root INFO building 'rpy2.rinterface_lib._bufferprotocol' extension 2025-05-14 16:52:50,270 root INFO creating build/temp.linux-x86_64-cpython-312/rpy2/rinterface_lib 2025-05-14 16:52:50,271 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c rpy2/rinterface_lib/_bufferprotocol.c -o build/temp.linux-x86_64-cpython-312/rpy2/rinterface_lib/_bufferprotocol.o 2025-05-14 16:52:50,406 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/rpy2/rinterface_lib/_bufferprotocol.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib/_bufferprotocol.cpython-312-x86_64-linux-musl.so 2025-05-14 16:52:50,423 root INFO building '_rinterface_cffi_api' extension 2025-05-14 16:52:50,423 root INFO creating build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312 2025-05-14 16:52:50,423 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -DRPY2_RLEN_LONG=True -DR_INTERFACE_PTRS=True -Irpy2/rinterface_lib/ -I/usr/include/python3.12 -c build/temp.linux-x86_64-cpython-312/_rinterface_cffi_api.c -o build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/_rinterface_cffi_api.o -std=c99 2025-05-14 16:52:52,988 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/build/temp.linux-x86_64-cpython-312/_rinterface_cffi_api.o -L/usr/lib/R/lib -L/usr/lib -lR -lpcre2-8 -ldeflate -lzstd -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n -lopenblas -o build/lib.linux-x86_64-cpython-312/_rinterface_cffi_api.abi3.so -Wl,--export-dynamic -fopenmp -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Wl,-rpath,/usr/lib/R/lib 2025-05-14 16:52:53,038 root INFO installing to build/bdist.linux-x86_64/wheel 2025-05-14 16:52:53,038 root INFO running install 2025-05-14 16:52:53,049 root INFO running install_lib 2025-05-14 16:52:53,054 root INFO creating build/bdist.linux-x86_64/wheel 2025-05-14 16:52:53,054 root INFO creating build/bdist.linux-x86_64/wheel/rpy2 2025-05-14 16:52:53,054 root INFO creating build/bdist.linux-x86_64/wheel/rpy2/tests 2025-05-14 16:52:53,055 root INFO creating build/bdist.linux-x86_64/wheel/rpy2/tests/rinterface 2025-05-14 16:52:53,055 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_vector_int.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,055 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_noinitialization.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,055 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_vector_list.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,056 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_functions.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,056 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_embedded_r.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,056 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_environment.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,056 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_sexp.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,057 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_vector_str.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,057 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_conversion.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,057 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_vector_numpy.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,057 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_bufferprotocol.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,058 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_vector_byte.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,058 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_symbol.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,058 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_openrlib.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,058 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_vector_lang.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,058 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_na.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,059 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_vector_pairlist.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,059 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_callbacks.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,059 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_memorymanagement.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,059 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_vector_bool.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,060 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_externalptr.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,060 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_vector_float.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,060 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_vector_complex.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,060 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/__init__.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,060 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_threading.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,061 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_vectors.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,061 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rinterface/test_endr.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rinterface 2025-05-14 16:52:53,061 root INFO creating build/bdist.linux-x86_64/wheel/rpy2/tests/ipython 2025-05-14 16:52:53,061 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/ipython/test_ggplot.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/ipython 2025-05-14 16:52:53,062 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/ipython/test_rmagic.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/ipython 2025-05-14 16:52:53,062 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/ipython/__init__.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/ipython 2025-05-14 16:52:53,062 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/ipython/test_html.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/ipython 2025-05-14 16:52:53,062 root INFO creating build/bdist.linux-x86_64/wheel/rpy2/tests/rlike 2025-05-14 16:52:53,063 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rlike/test_container.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rlike 2025-05-14 16:52:53,063 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rlike/test_indexing.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rlike 2025-05-14 16:52:53,063 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/rlike/test_functional.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/rlike 2025-05-14 16:52:53,063 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/utils.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests 2025-05-14 16:52:53,064 root INFO creating build/bdist.linux-x86_64/wheel/rpy2/tests/robjects 2025-05-14 16:52:53,064 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/test_function.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects 2025-05-14 16:52:53,064 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/test_environment.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects 2025-05-14 16:52:53,064 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/test_conversion_numpy.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects 2025-05-14 16:52:53,065 root INFO creating build/bdist.linux-x86_64/wheel/rpy2/tests/robjects/lib 2025-05-14 16:52:53,065 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/lib/test_dplyr.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects/lib 2025-05-14 16:52:53,065 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/lib/test_grdevices.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects/lib 2025-05-14 16:52:53,065 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/lib/test_ggplot2.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects/lib 2025-05-14 16:52:53,066 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/lib/test_grid.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects/lib 2025-05-14 16:52:53,066 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/lib/__init__.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects/lib 2025-05-14 16:52:53,066 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/lib/test_dbplyr.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects/lib 2025-05-14 16:52:53,066 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/lib/test_tidyr.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects/lib 2025-05-14 16:52:53,067 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/test_conversion.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects 2025-05-14 16:52:53,067 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/test_methods.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects 2025-05-14 16:52:53,067 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/test_vector.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects 2025-05-14 16:52:53,067 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/test_language.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects 2025-05-14 16:52:53,067 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/test_vector_factor.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects 2025-05-14 16:52:53,068 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/test_help.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects 2025-05-14 16:52:53,068 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/test_formula.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects 2025-05-14 16:52:53,068 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/test_dataframe.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects 2025-05-14 16:52:53,068 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/test_robjects.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects 2025-05-14 16:52:53,069 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/test_serialization.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects 2025-05-14 16:52:53,069 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/test_vector_extractdelegator.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects 2025-05-14 16:52:53,069 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/test_translated_function.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects 2025-05-14 16:52:53,069 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/test_pandas_conversions.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects 2025-05-14 16:52:53,070 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/__init__.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects 2025-05-14 16:52:53,070 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/test_packages.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects 2025-05-14 16:52:53,070 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/test_vector_datetime.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects 2025-05-14 16:52:53,070 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/test_rs4.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects 2025-05-14 16:52:53,070 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/test_array.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects 2025-05-14 16:52:53,071 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/robjects/test_packages_utils.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests/robjects 2025-05-14 16:52:53,071 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/tests/__init__.py -> build/bdist.linux-x86_64/wheel/./rpy2/tests 2025-05-14 16:52:53,071 root INFO creating build/bdist.linux-x86_64/wheel/rpy2/ipython 2025-05-14 16:52:53,071 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/ipython/rmagic.py -> build/bdist.linux-x86_64/wheel/./rpy2/ipython 2025-05-14 16:52:53,072 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/ipython/ggplot.py -> build/bdist.linux-x86_64/wheel/./rpy2/ipython 2025-05-14 16:52:53,072 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/ipython/__init__.py -> build/bdist.linux-x86_64/wheel/./rpy2/ipython 2025-05-14 16:52:53,072 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/ipython/html.py -> build/bdist.linux-x86_64/wheel/./rpy2/ipython 2025-05-14 16:52:53,073 root INFO creating build/bdist.linux-x86_64/wheel/rpy2/rinterface_lib 2025-05-14 16:52:53,073 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib/R_API_eventloop.h -> build/bdist.linux-x86_64/wheel/./rpy2/rinterface_lib 2025-05-14 16:52:53,073 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib/_rinterface_capi.py -> build/bdist.linux-x86_64/wheel/./rpy2/rinterface_lib 2025-05-14 16:52:53,073 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib/R_API.h -> build/bdist.linux-x86_64/wheel/./rpy2/rinterface_lib 2025-05-14 16:52:53,073 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib/embedded.py -> build/bdist.linux-x86_64/wheel/./rpy2/rinterface_lib 2025-05-14 16:52:53,074 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib/embedded_mswin.py -> build/bdist.linux-x86_64/wheel/./rpy2/rinterface_lib 2025-05-14 16:52:53,074 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib/conversion.py -> build/bdist.linux-x86_64/wheel/./rpy2/rinterface_lib 2025-05-14 16:52:53,074 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib/RPY2.h -> build/bdist.linux-x86_64/wheel/./rpy2/rinterface_lib 2025-05-14 16:52:53,074 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib/openrlib.py -> build/bdist.linux-x86_64/wheel/./rpy2/rinterface_lib 2025-05-14 16:52:53,075 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib/callbacks.py -> build/bdist.linux-x86_64/wheel/./rpy2/rinterface_lib 2025-05-14 16:52:53,075 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib/ffi_proxy.py -> build/bdist.linux-x86_64/wheel/./rpy2/rinterface_lib 2025-05-14 16:52:53,075 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib/sexp.py -> build/bdist.linux-x86_64/wheel/./rpy2/rinterface_lib 2025-05-14 16:52:53,075 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib/__init__.py -> build/bdist.linux-x86_64/wheel/./rpy2/rinterface_lib 2025-05-14 16:52:53,076 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib/na_values.py -> build/bdist.linux-x86_64/wheel/./rpy2/rinterface_lib 2025-05-14 16:52:53,076 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib/R_API_eventloop.c -> build/bdist.linux-x86_64/wheel/./rpy2/rinterface_lib 2025-05-14 16:52:53,076 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib/memorymanagement.py -> build/bdist.linux-x86_64/wheel/./rpy2/rinterface_lib 2025-05-14 16:52:53,076 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib/bufferprotocol.py -> build/bdist.linux-x86_64/wheel/./rpy2/rinterface_lib 2025-05-14 16:52:53,077 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib/_bufferprotocol.c -> build/bdist.linux-x86_64/wheel/./rpy2/rinterface_lib 2025-05-14 16:52:53,077 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/rinterface_lib/_bufferprotocol.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./rpy2/rinterface_lib 2025-05-14 16:52:53,077 root INFO creating build/bdist.linux-x86_64/wheel/rpy2/rlike 2025-05-14 16:52:53,077 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/rlike/indexing.py -> build/bdist.linux-x86_64/wheel/./rpy2/rlike 2025-05-14 16:52:53,078 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/rlike/functional.py -> build/bdist.linux-x86_64/wheel/./rpy2/rlike 2025-05-14 16:52:53,078 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/rlike/container.py -> build/bdist.linux-x86_64/wheel/./rpy2/rlike 2025-05-14 16:52:53,078 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/rlike/__init__.py -> build/bdist.linux-x86_64/wheel/./rpy2/rlike 2025-05-14 16:52:53,078 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/rinterface.py -> build/bdist.linux-x86_64/wheel/./rpy2 2025-05-14 16:52:53,079 root INFO creating build/bdist.linux-x86_64/wheel/rpy2/robjects 2025-05-14 16:52:53,079 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/robjects/vectors.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects 2025-05-14 16:52:53,079 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/robjects/pandas2ri.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects 2025-05-14 16:52:53,079 root INFO creating build/bdist.linux-x86_64/wheel/rpy2/robjects/lib 2025-05-14 16:52:53,080 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/robjects/lib/dbplyr.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects/lib 2025-05-14 16:52:53,080 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/robjects/lib/ggplot2.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects/lib 2025-05-14 16:52:53,080 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/robjects/lib/__init__.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects/lib 2025-05-14 16:52:53,080 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/robjects/lib/tidyr.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects/lib 2025-05-14 16:52:53,081 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/robjects/lib/dplyr.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects/lib 2025-05-14 16:52:53,081 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/robjects/lib/grid.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects/lib 2025-05-14 16:52:53,081 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/robjects/lib/grdevices.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects/lib 2025-05-14 16:52:53,081 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/robjects/robject.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects 2025-05-14 16:52:53,082 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/robjects/packages_utils.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects 2025-05-14 16:52:53,082 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/robjects/conversion.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects 2025-05-14 16:52:53,082 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/robjects/help.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects 2025-05-14 16:52:53,082 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/robjects/methods.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects 2025-05-14 16:52:53,083 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/robjects/constants.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects 2025-05-14 16:52:53,083 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/robjects/packages.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects 2025-05-14 16:52:53,083 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/robjects/__init__.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects 2025-05-14 16:52:53,083 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/robjects/numpy2ri.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects 2025-05-14 16:52:53,083 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/robjects/language.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects 2025-05-14 16:52:53,084 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/robjects/functions.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects 2025-05-14 16:52:53,084 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/robjects/environments.py -> build/bdist.linux-x86_64/wheel/./rpy2/robjects 2025-05-14 16:52:53,084 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/situation.py -> build/bdist.linux-x86_64/wheel/./rpy2 2025-05-14 16:52:53,084 root INFO creating build/bdist.linux-x86_64/wheel/rpy2/interactive 2025-05-14 16:52:53,085 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/interactive/process_revents.py -> build/bdist.linux-x86_64/wheel/./rpy2/interactive 2025-05-14 16:52:53,085 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/interactive/packages.py -> build/bdist.linux-x86_64/wheel/./rpy2/interactive 2025-05-14 16:52:53,085 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/interactive/__init__.py -> build/bdist.linux-x86_64/wheel/./rpy2/interactive 2025-05-14 16:52:53,085 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/__init__.py -> build/bdist.linux-x86_64/wheel/./rpy2 2025-05-14 16:52:53,085 root INFO copying build/lib.linux-x86_64-cpython-312/rpy2/_rinterface_cffi_build.py -> build/bdist.linux-x86_64/wheel/./rpy2 2025-05-14 16:52:53,086 root INFO copying build/lib.linux-x86_64-cpython-312/_rinterface_cffi_api.abi3.so -> build/bdist.linux-x86_64/wheel/. 2025-05-14 16:52:53,086 root INFO copying build/lib.linux-x86_64-cpython-312/_rinterface_cffi_abi.py -> build/bdist.linux-x86_64/wheel/. 2025-05-14 16:52:53,086 root INFO running install_egg_info 2025-05-14 16:52:53,090 root INFO Copying rpy2.egg-info to build/bdist.linux-x86_64/wheel/./rpy2-3.5.17-py3.12.egg-info 2025-05-14 16:52:53,092 root INFO running install_scripts 2025-05-14 16:52:53,097 root INFO creating build/bdist.linux-x86_64/wheel/rpy2-3.5.17.dist-info/WHEEL 2025-05-14 16:52:53,098 wheel INFO creating '/home/buildozer/aports/community/py3-rpy2/src/rpy2-3.5.17/.dist/.tmp-cu8pc_0w/rpy2-3.5.17-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it 2025-05-14 16:52:53,098 wheel INFO adding '_rinterface_cffi_abi.py' 2025-05-14 16:52:53,099 wheel INFO adding '_rinterface_cffi_api.abi3.so' 2025-05-14 16:52:53,100 wheel INFO adding 'rpy2/__init__.py' 2025-05-14 16:52:53,100 wheel INFO adding 'rpy2/_rinterface_cffi_build.py' 2025-05-14 16:52:53,100 wheel INFO adding 'rpy2/rinterface.py' 2025-05-14 16:52:53,101 wheel INFO adding 'rpy2/situation.py' 2025-05-14 16:52:53,101 wheel INFO adding 'rpy2/interactive/__init__.py' 2025-05-14 16:52:53,101 wheel INFO adding 'rpy2/interactive/packages.py' 2025-05-14 16:52:53,101 wheel INFO adding 'rpy2/interactive/process_revents.py' 2025-05-14 16:52:53,102 wheel INFO adding 'rpy2/ipython/__init__.py' 2025-05-14 16:52:53,102 wheel INFO adding 'rpy2/ipython/ggplot.py' 2025-05-14 16:52:53,102 wheel INFO adding 'rpy2/ipython/html.py' 2025-05-14 16:52:53,102 wheel INFO adding 'rpy2/ipython/rmagic.py' 2025-05-14 16:52:53,103 wheel INFO adding 'rpy2/rinterface_lib/RPY2.h' 2025-05-14 16:52:53,103 wheel INFO adding 'rpy2/rinterface_lib/R_API.h' 2025-05-14 16:52:53,103 wheel INFO adding 'rpy2/rinterface_lib/R_API_eventloop.c' 2025-05-14 16:52:53,104 wheel INFO adding 'rpy2/rinterface_lib/R_API_eventloop.h' 2025-05-14 16:52:53,104 wheel INFO adding 'rpy2/rinterface_lib/__init__.py' 2025-05-14 16:52:53,104 wheel INFO adding 'rpy2/rinterface_lib/_bufferprotocol.c' 2025-05-14 16:52:53,104 wheel INFO adding 'rpy2/rinterface_lib/_bufferprotocol.cpython-312-x86_64-linux-musl.so' 2025-05-14 16:52:53,105 wheel INFO adding 'rpy2/rinterface_lib/_rinterface_capi.py' 2025-05-14 16:52:53,105 wheel INFO adding 'rpy2/rinterface_lib/bufferprotocol.py' 2025-05-14 16:52:53,105 wheel INFO adding 'rpy2/rinterface_lib/callbacks.py' 2025-05-14 16:52:53,105 wheel INFO adding 'rpy2/rinterface_lib/conversion.py' 2025-05-14 16:52:53,106 wheel INFO adding 'rpy2/rinterface_lib/embedded.py' 2025-05-14 16:52:53,106 wheel INFO adding 'rpy2/rinterface_lib/embedded_mswin.py' 2025-05-14 16:52:53,106 wheel INFO adding 'rpy2/rinterface_lib/ffi_proxy.py' 2025-05-14 16:52:53,106 wheel INFO adding 'rpy2/rinterface_lib/memorymanagement.py' 2025-05-14 16:52:53,107 wheel INFO adding 'rpy2/rinterface_lib/na_values.py' 2025-05-14 16:52:53,107 wheel INFO adding 'rpy2/rinterface_lib/openrlib.py' 2025-05-14 16:52:53,107 wheel INFO adding 'rpy2/rinterface_lib/sexp.py' 2025-05-14 16:52:53,108 wheel INFO adding 'rpy2/rlike/__init__.py' 2025-05-14 16:52:53,108 wheel INFO adding 'rpy2/rlike/container.py' 2025-05-14 16:52:53,108 wheel INFO adding 'rpy2/rlike/functional.py' 2025-05-14 16:52:53,108 wheel INFO adding 'rpy2/rlike/indexing.py' 2025-05-14 16:52:53,109 wheel INFO adding 'rpy2/robjects/__init__.py' 2025-05-14 16:52:53,109 wheel INFO adding 'rpy2/robjects/constants.py' 2025-05-14 16:52:53,109 wheel INFO adding 'rpy2/robjects/conversion.py' 2025-05-14 16:52:53,109 wheel INFO adding 'rpy2/robjects/environments.py' 2025-05-14 16:52:53,110 wheel INFO adding 'rpy2/robjects/functions.py' 2025-05-14 16:52:53,110 wheel INFO adding 'rpy2/robjects/help.py' 2025-05-14 16:52:53,110 wheel INFO adding 'rpy2/robjects/language.py' 2025-05-14 16:52:53,110 wheel INFO adding 'rpy2/robjects/methods.py' 2025-05-14 16:52:53,111 wheel INFO adding 'rpy2/robjects/numpy2ri.py' 2025-05-14 16:52:53,111 wheel INFO adding 'rpy2/robjects/packages.py' 2025-05-14 16:52:53,111 wheel INFO adding 'rpy2/robjects/packages_utils.py' 2025-05-14 16:52:53,112 wheel INFO adding 'rpy2/robjects/pandas2ri.py' 2025-05-14 16:52:53,112 wheel INFO adding 'rpy2/robjects/robject.py' 2025-05-14 16:52:53,112 wheel INFO adding 'rpy2/robjects/vectors.py' 2025-05-14 16:52:53,113 wheel INFO adding 'rpy2/robjects/lib/__init__.py' 2025-05-14 16:52:53,113 wheel INFO adding 'rpy2/robjects/lib/dbplyr.py' 2025-05-14 16:52:53,113 wheel INFO adding 'rpy2/robjects/lib/dplyr.py' 2025-05-14 16:52:53,113 wheel INFO adding 'rpy2/robjects/lib/ggplot2.py' 2025-05-14 16:52:53,114 wheel INFO adding 'rpy2/robjects/lib/grdevices.py' 2025-05-14 16:52:53,114 wheel INFO adding 'rpy2/robjects/lib/grid.py' 2025-05-14 16:52:53,114 wheel INFO adding 'rpy2/robjects/lib/tidyr.py' 2025-05-14 16:52:53,114 wheel INFO adding 'rpy2/tests/__init__.py' 2025-05-14 16:52:53,115 wheel INFO adding 'rpy2/tests/utils.py' 2025-05-14 16:52:53,115 wheel INFO adding 'rpy2/tests/ipython/__init__.py' 2025-05-14 16:52:53,115 wheel INFO adding 'rpy2/tests/ipython/test_ggplot.py' 2025-05-14 16:52:53,115 wheel INFO adding 'rpy2/tests/ipython/test_html.py' 2025-05-14 16:52:53,116 wheel INFO adding 'rpy2/tests/ipython/test_rmagic.py' 2025-05-14 16:52:53,116 wheel INFO adding 'rpy2/tests/rinterface/__init__.py' 2025-05-14 16:52:53,116 wheel INFO adding 'rpy2/tests/rinterface/test_bufferprotocol.py' 2025-05-14 16:52:53,116 wheel INFO adding 'rpy2/tests/rinterface/test_callbacks.py' 2025-05-14 16:52:53,117 wheel INFO adding 'rpy2/tests/rinterface/test_conversion.py' 2025-05-14 16:52:53,117 wheel INFO adding 'rpy2/tests/rinterface/test_embedded_r.py' 2025-05-14 16:52:53,117 wheel INFO adding 'rpy2/tests/rinterface/test_endr.py' 2025-05-14 16:52:53,117 wheel INFO adding 'rpy2/tests/rinterface/test_environment.py' 2025-05-14 16:52:53,118 wheel INFO adding 'rpy2/tests/rinterface/test_externalptr.py' 2025-05-14 16:52:53,118 wheel INFO adding 'rpy2/tests/rinterface/test_functions.py' 2025-05-14 16:52:53,118 wheel INFO adding 'rpy2/tests/rinterface/test_memorymanagement.py' 2025-05-14 16:52:53,118 wheel INFO adding 'rpy2/tests/rinterface/test_na.py' 2025-05-14 16:52:53,118 wheel INFO adding 'rpy2/tests/rinterface/test_noinitialization.py' 2025-05-14 16:52:53,119 wheel INFO adding 'rpy2/tests/rinterface/test_openrlib.py' 2025-05-14 16:52:53,119 wheel INFO adding 'rpy2/tests/rinterface/test_sexp.py' 2025-05-14 16:52:53,119 wheel INFO adding 'rpy2/tests/rinterface/test_symbol.py' 2025-05-14 16:52:53,119 wheel INFO adding 'rpy2/tests/rinterface/test_threading.py' 2025-05-14 16:52:53,120 wheel INFO adding 'rpy2/tests/rinterface/test_vector_bool.py' 2025-05-14 16:52:53,120 wheel INFO adding 'rpy2/tests/rinterface/test_vector_byte.py' 2025-05-14 16:52:53,120 wheel INFO adding 'rpy2/tests/rinterface/test_vector_complex.py' 2025-05-14 16:52:53,120 wheel INFO adding 'rpy2/tests/rinterface/test_vector_float.py' 2025-05-14 16:52:53,120 wheel INFO adding 'rpy2/tests/rinterface/test_vector_int.py' 2025-05-14 16:52:53,121 wheel INFO adding 'rpy2/tests/rinterface/test_vector_lang.py' 2025-05-14 16:52:53,121 wheel INFO adding 'rpy2/tests/rinterface/test_vector_list.py' 2025-05-14 16:52:53,121 wheel INFO adding 'rpy2/tests/rinterface/test_vector_numpy.py' 2025-05-14 16:52:53,121 wheel INFO adding 'rpy2/tests/rinterface/test_vector_pairlist.py' 2025-05-14 16:52:53,122 wheel INFO adding 'rpy2/tests/rinterface/test_vector_str.py' 2025-05-14 16:52:53,122 wheel INFO adding 'rpy2/tests/rinterface/test_vectors.py' 2025-05-14 16:52:53,122 wheel INFO adding 'rpy2/tests/rlike/test_container.py' 2025-05-14 16:52:53,122 wheel INFO adding 'rpy2/tests/rlike/test_functional.py' 2025-05-14 16:52:53,122 wheel INFO adding 'rpy2/tests/rlike/test_indexing.py' 2025-05-14 16:52:53,123 wheel INFO adding 'rpy2/tests/robjects/__init__.py' 2025-05-14 16:52:53,123 wheel INFO adding 'rpy2/tests/robjects/test_array.py' 2025-05-14 16:52:53,123 wheel INFO adding 'rpy2/tests/robjects/test_conversion.py' 2025-05-14 16:52:53,123 wheel INFO adding 'rpy2/tests/robjects/test_conversion_numpy.py' 2025-05-14 16:52:53,124 wheel INFO adding 'rpy2/tests/robjects/test_dataframe.py' 2025-05-14 16:52:53,124 wheel INFO adding 'rpy2/tests/robjects/test_environment.py' 2025-05-14 16:52:53,124 wheel INFO adding 'rpy2/tests/robjects/test_formula.py' 2025-05-14 16:52:53,124 wheel INFO adding 'rpy2/tests/robjects/test_function.py' 2025-05-14 16:52:53,125 wheel INFO adding 'rpy2/tests/robjects/test_help.py' 2025-05-14 16:52:53,125 wheel INFO adding 'rpy2/tests/robjects/test_language.py' 2025-05-14 16:52:53,125 wheel INFO adding 'rpy2/tests/robjects/test_methods.py' 2025-05-14 16:52:53,125 wheel INFO adding 'rpy2/tests/robjects/test_packages.py' 2025-05-14 16:52:53,125 wheel INFO adding 'rpy2/tests/robjects/test_packages_utils.py' 2025-05-14 16:52:53,126 wheel INFO adding 'rpy2/tests/robjects/test_pandas_conversions.py' 2025-05-14 16:52:53,126 wheel INFO adding 'rpy2/tests/robjects/test_robjects.py' 2025-05-14 16:52:53,126 wheel INFO adding 'rpy2/tests/robjects/test_rs4.py' 2025-05-14 16:52:53,126 wheel INFO adding 'rpy2/tests/robjects/test_serialization.py' 2025-05-14 16:52:53,127 wheel INFO adding 'rpy2/tests/robjects/test_translated_function.py' 2025-05-14 16:52:53,127 wheel INFO adding 'rpy2/tests/robjects/test_vector.py' 2025-05-14 16:52:53,127 wheel INFO adding 'rpy2/tests/robjects/test_vector_datetime.py' 2025-05-14 16:52:53,127 wheel INFO adding 'rpy2/tests/robjects/test_vector_extractdelegator.py' 2025-05-14 16:52:53,127 wheel INFO adding 'rpy2/tests/robjects/test_vector_factor.py' 2025-05-14 16:52:53,128 wheel INFO adding 'rpy2/tests/robjects/lib/__init__.py' 2025-05-14 16:52:53,128 wheel INFO adding 'rpy2/tests/robjects/lib/test_dbplyr.py' 2025-05-14 16:52:53,128 wheel INFO adding 'rpy2/tests/robjects/lib/test_dplyr.py' 2025-05-14 16:52:53,128 wheel INFO adding 'rpy2/tests/robjects/lib/test_ggplot2.py' 2025-05-14 16:52:53,129 wheel INFO adding 'rpy2/tests/robjects/lib/test_grdevices.py' 2025-05-14 16:52:53,129 wheel INFO adding 'rpy2/tests/robjects/lib/test_grid.py' 2025-05-14 16:52:53,129 wheel INFO adding 'rpy2/tests/robjects/lib/test_tidyr.py' 2025-05-14 16:52:53,129 wheel INFO adding 'rpy2-3.5.17.dist-info/licenses/AUTHORS' 2025-05-14 16:52:53,130 wheel INFO adding 'rpy2-3.5.17.dist-info/licenses/LICENSE' 2025-05-14 16:52:53,130 wheel INFO adding 'rpy2-3.5.17.dist-info/METADATA' 2025-05-14 16:52:53,130 wheel INFO adding 'rpy2-3.5.17.dist-info/WHEEL' 2025-05-14 16:52:53,130 wheel INFO adding 'rpy2-3.5.17.dist-info/top_level.txt' 2025-05-14 16:52:53,131 wheel INFO adding 'rpy2-3.5.17.dist-info/RECORD' 2025-05-14 16:52:53,131 root INFO removing build/bdist.linux-x86_64/wheel 2025-05-14 16:52:53,134 gpep517 INFO The backend produced .dist/rpy2-3.5.17-cp312-cp312-linux_x86_64.whl rpy2-3.5.17-cp312-cp312-linux_x86_64.whl cffi mode: CFFI_MODE.ANY --- CFFI_MODE.ANY ABI mode interface built. API mode interface built. To change the API/ABI build mode, set or modify the environment variable RPY2_CFFI_MODE. ============================= test session starts ============================== platform linux -- Python 3.12.10, pytest-8.3.5, pluggy-1.5.0 -- /home/buildozer/aports/community/py3-rpy2/src/rpy2-3.5.17/.testenv/bin/python3 cachedir: .pytest_cache rootdir: /home/buildozer/aports/community/py3-rpy2/src/rpy2-3.5.17 configfile: pyproject.toml testpaths: rpy2/tests collecting ... collected 363 items / 30 errors / 1 deselected / 362 selected ==================================== ERRORS ==================================== ______________ ERROR collecting rpy2/tests/ipython/test_ggplot.py ______________ rpy2/tests/ipython/test_ggplot.py:2: in from rpy2.robjects.packages import PackageNotInstalledError rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ------------------------------- Captured stderr -------------------------------- During startup - Warning messages: 1: package "methods" in options("defaultPackages") was not found 2: package ‘utils’ in options("defaultPackages") was not found 3: package ‘grDevices’ in options("defaultPackages") was not found 4: package ‘graphics’ in options("defaultPackages") was not found 5: package ‘stats’ in options("defaultPackages") was not found 6: package ‘methods’ in options("defaultPackages") was not found _______________ ERROR collecting rpy2/tests/ipython/test_html.py _______________ rpy2/tests/ipython/test_html.py:4: in from rpy2.robjects import vectors rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ______________ ERROR collecting rpy2/tests/ipython/test_rmagic.py ______________ rpy2/tests/ipython/test_rmagic.py:8: in import rpy2.robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ___________ ERROR collecting rpy2/tests/robjects/lib/test_dbplyr.py ____________ rpy2/tests/robjects/lib/test_dbplyr.py:2: in from rpy2.robjects import packages rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ____________ ERROR collecting rpy2/tests/robjects/lib/test_dplyr.py ____________ rpy2/tests/robjects/lib/test_dplyr.py:2: in from rpy2.robjects import packages rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ___________ ERROR collecting rpy2/tests/robjects/lib/test_ggplot2.py ___________ rpy2/tests/robjects/lib/test_ggplot2.py:3: in from rpy2.robjects import packages rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) __________ ERROR collecting rpy2/tests/robjects/lib/test_grdevices.py __________ rpy2/tests/robjects/lib/test_grdevices.py:6: in from rpy2.robjects.packages import importr, data rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ____________ ERROR collecting rpy2/tests/robjects/lib/test_grid.py _____________ rpy2/tests/robjects/lib/test_grid.py:7: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ____________ ERROR collecting rpy2/tests/robjects/lib/test_tidyr.py ____________ rpy2/tests/robjects/lib/test_tidyr.py:3: in from rpy2.robjects import packages rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ______________ ERROR collecting rpy2/tests/robjects/test_array.py ______________ rpy2/tests/robjects/test_array.py:2: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ___________ ERROR collecting rpy2/tests/robjects/test_conversion.py ____________ rpy2/tests/robjects/test_conversion.py:5: in from rpy2 import robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ________ ERROR collecting rpy2/tests/robjects/test_conversion_numpy.py _________ rpy2/tests/robjects/test_conversion_numpy.py:3: in from rpy2 import robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ____________ ERROR collecting rpy2/tests/robjects/test_dataframe.py ____________ rpy2/tests/robjects/test_dataframe.py:2: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ___________ ERROR collecting rpy2/tests/robjects/test_environment.py ___________ rpy2/tests/robjects/test_environment.py:2: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) _____________ ERROR collecting rpy2/tests/robjects/test_formula.py _____________ rpy2/tests/robjects/test_formula.py:2: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ____________ ERROR collecting rpy2/tests/robjects/test_function.py _____________ rpy2/tests/robjects/test_function.py:3: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ______________ ERROR collecting rpy2/tests/robjects/test_help.py _______________ rpy2/tests/robjects/test_help.py:3: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ____________ ERROR collecting rpy2/tests/robjects/test_language.py _____________ rpy2/tests/robjects/test_language.py:2: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) _____________ ERROR collecting rpy2/tests/robjects/test_methods.py _____________ rpy2/tests/robjects/test_methods.py:4: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ____________ ERROR collecting rpy2/tests/robjects/test_packages.py _____________ rpy2/tests/robjects/test_packages.py:5: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) _________ ERROR collecting rpy2/tests/robjects/test_packages_utils.py __________ rpy2/tests/robjects/test_packages_utils.py:2: in import rpy2.robjects.packages_utils as p_u rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) _______ ERROR collecting rpy2/tests/robjects/test_pandas_conversions.py ________ rpy2/tests/robjects/test_pandas_conversions.py:8: in from rpy2 import robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) ____________ ERROR collecting rpy2/tests/robjects/test_robjects.py _____________ rpy2/tests/robjects/test_robjects.py:3: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) _______________ ERROR collecting rpy2/tests/robjects/test_rs4.py _______________ rpy2/tests/robjects/test_rs4.py:2: in from rpy2 import robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) __________ ERROR collecting rpy2/tests/robjects/test_serialization.py __________ rpy2/tests/robjects/test_serialization.py:5: in from rpy2 import robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) _______ ERROR collecting rpy2/tests/robjects/test_translated_function.py _______ rpy2/tests/robjects/test_translated_function.py:3: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) _____________ ERROR collecting rpy2/tests/robjects/test_vector.py ______________ rpy2/tests/robjects/test_vector.py:2: in import rpy2.robjects as robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) _________ ERROR collecting rpy2/tests/robjects/test_vector_datetime.py _________ rpy2/tests/robjects/test_vector_datetime.py:9: in from rpy2 import robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) _____ ERROR collecting rpy2/tests/robjects/test_vector_extractdelegator.py _____ rpy2/tests/robjects/test_vector_extractdelegator.py:6: in from rpy2 import robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) __________ ERROR collecting rpy2/tests/robjects/test_vector_factor.py __________ rpy2/tests/robjects/test_vector_factor.py:3: in from rpy2 import robjects rpy2/robjects/__init__.py:21: in from rpy2.robjects.robject import RObjectMixin, RObject rpy2/robjects/robject.py:81: in class RObjectMixin(abc.ABC): rpy2/robjects/robject.py:93: in RObjectMixin __show = _get_exported_value('methods', 'show') rpy2/rinterface_lib/conversion.py:45: in _ cdata = function(*args, **kwargs) rpy2/rinterface.py:890: in __call__ raise embedded.RRuntimeError(_rinterface._geterrmessage()) E rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : E unable to load shared object '/usr/lib/R/library/methods/libs/methods.so': E Error loading shared library libR.so: No such file or directory (needed by /usr/lib/R/library/methods/libs/methods.so) =============================== warnings summary =============================== rpy2/rinterface.py:1189 rpy2/rinterface.py:1189 /home/buildozer/aports/community/py3-rpy2/src/rpy2-3.5.17/rpy2/rinterface.py:1189: UserWarning: Environment variable "LD_LIBRARY_PATH" redefined by R and overriding existing variable. warnings.warn( rpy2/rinterface.py:1189 rpy2/rinterface.py:1189 /home/buildozer/aports/community/py3-rpy2/src/rpy2-3.5.17/rpy2/rinterface.py:1189: UserWarning: Environment variable "SHLVL" redefined by R and overriding existing variable. warnings.warn( rpy2/rinterface.py:1189 rpy2/rinterface.py:1189 /home/buildozer/aports/community/py3-rpy2/src/rpy2-3.5.17/rpy2/rinterface.py:1189: UserWarning: Environment variable "R_SESSION_TMPDIR" redefined by R and overriding existing variable. warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ ERROR rpy2/tests/ipython/test_ggplot.py - rpy2.rinterface_lib.embedded.RRunti... ERROR rpy2/tests/ipython/test_html.py - rpy2.rinterface_lib.embedded.RRuntime... ERROR rpy2/tests/ipython/test_rmagic.py - rpy2.rinterface_lib.embedded.RRunti... ERROR rpy2/tests/robjects/lib/test_dbplyr.py - rpy2.rinterface_lib.embedded.R... ERROR rpy2/tests/robjects/lib/test_dplyr.py - rpy2.rinterface_lib.embedded.RR... ERROR rpy2/tests/robjects/lib/test_ggplot2.py - rpy2.rinterface_lib.embedded.... ERROR rpy2/tests/robjects/lib/test_grdevices.py - rpy2.rinterface_lib.embedde... ERROR rpy2/tests/robjects/lib/test_grid.py - rpy2.rinterface_lib.embedded.RRu... ERROR rpy2/tests/robjects/lib/test_tidyr.py - rpy2.rinterface_lib.embedded.RR... ERROR rpy2/tests/robjects/test_array.py - rpy2.rinterface_lib.embedded.RRunti... ERROR rpy2/tests/robjects/test_conversion.py - rpy2.rinterface_lib.embedded.R... ERROR rpy2/tests/robjects/test_conversion_numpy.py - rpy2.rinterface_lib.embe... ERROR rpy2/tests/robjects/test_dataframe.py - rpy2.rinterface_lib.embedded.RR... ERROR rpy2/tests/robjects/test_environment.py - rpy2.rinterface_lib.embedded.... ERROR rpy2/tests/robjects/test_formula.py - rpy2.rinterface_lib.embedded.RRun... ERROR rpy2/tests/robjects/test_function.py - rpy2.rinterface_lib.embedded.RRu... ERROR rpy2/tests/robjects/test_help.py - rpy2.rinterface_lib.embedded.RRuntim... ERROR rpy2/tests/robjects/test_language.py - rpy2.rinterface_lib.embedded.RRu... ERROR rpy2/tests/robjects/test_methods.py - rpy2.rinterface_lib.embedded.RRun... ERROR rpy2/tests/robjects/test_packages.py - rpy2.rinterface_lib.embedded.RRu... ERROR rpy2/tests/robjects/test_packages_utils.py - rpy2.rinterface_lib.embedd... ERROR rpy2/tests/robjects/test_pandas_conversions.py - rpy2.rinterface_lib.em... ERROR rpy2/tests/robjects/test_robjects.py - rpy2.rinterface_lib.embedded.RRu... ERROR rpy2/tests/robjects/test_rs4.py - rpy2.rinterface_lib.embedded.RRuntime... ERROR rpy2/tests/robjects/test_serialization.py - rpy2.rinterface_lib.embedde... ERROR rpy2/tests/robjects/test_translated_function.py - rpy2.rinterface_lib.e... ERROR rpy2/tests/robjects/test_vector.py - rpy2.rinterface_lib.embedded.RRunt... ERROR rpy2/tests/robjects/test_vector_datetime.py - rpy2.rinterface_lib.embed... ERROR rpy2/tests/robjects/test_vector_extractdelegator.py - rpy2.rinterface_l... ERROR rpy2/tests/robjects/test_vector_factor.py - rpy2.rinterface_lib.embedde... !!!!!!!!!!!!!!!!!!! Interrupted: 30 errors during collection !!!!!!!!!!!!!!!!!!! ================= 1 deselected, 6 warnings, 30 errors in 7.69s ================= >>> ERROR: py3-rpy2: check failed >>> py3-rpy2: Uninstalling dependencies... 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