>>> py3-biopython: Building community/py3-biopython 1.85-r0 (using abuild 3.16.0_rc4-r0) started Thu, 30 Oct 2025 14:18:33 +0000
>>> py3-biopython: Validating /home/buildozer/aports/community/py3-biopython/APKBUILD...
>>> WARNING: py3-biopython: No maintainer
>>> py3-biopython: Analyzing dependencies...
>>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev
( 1/31) Installing libbz2 (1.0.8-r6)
( 2/31) Installing libffi (3.5.2-r0)
( 3/31) Installing gdbm (1.26-r0)
( 4/31) Installing xz-libs (5.8.1-r0)
( 5/31) Installing mpdecimal (4.0.1-r0)
( 6/31) Installing libpanelw (6.5_p20251010-r0)
( 7/31) Installing sqlite-libs (3.50.4-r1)
( 8/31) Installing python3 (3.12.12-r0)
( 9/31) Installing python3-pycache-pyc0 (3.12.12-r0)
(10/31) Installing pyc (3.12.12-r0)
(11/31) Installing py3-numpy-pyc (2.3.4-r0)
(12/31) Installing python3-pyc (3.12.12-r0)
(13/31) Installing libgfortran (15.2.0-r1)
(14/31) Installing openblas (0.3.30-r0)
(15/31) Installing py3-numpy (2.3.4-r0)
(16/31) Installing py3-numpy-tests (2.3.4-r0)
(17/31) Installing py3-installer (0.7.0-r2)
(18/31) Installing py3-installer-pyc (0.7.0-r2)
(19/31) Installing py3-gpep517 (19-r0)
(20/31) Installing py3-gpep517-pyc (19-r0)
(21/31) Installing py3-parsing (3.2.3-r0)
(22/31) Installing py3-parsing-pyc (3.2.3-r0)
(23/31) Installing py3-packaging (25.0-r0)
(24/31) Installing py3-packaging-pyc (25.0-r0)
(25/31) Installing py3-setuptools (80.9.0-r1)
(26/31) Installing py3-setuptools-pyc (80.9.0-r1)
(27/31) Installing py3-wheel (0.46.1-r0)
(28/31) Installing py3-wheel-pyc (0.46.1-r0)
(29/31) Installing py3-numpy-dev (2.3.4-r0)
(30/31) Installing python3-dev (3.12.12-r0)
(31/31) Installing .makedepends-py3-biopython (20251030.141853)
busybox-1.37.0-r24.trigger: Executing script...
OK: 832 MiB in 136 packages
>>> py3-biopython: Cleaning up srcdir
>>> py3-biopython: Cleaning up pkgdir
>>> py3-biopython: Cleaning up tmpdir
>>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.85.tar.gz
/var/cache/distfiles/biopython-1.85.tar.gz: OK
>>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.85.tar.gz
/var/cache/distfiles/biopython-1.85.tar.gz: OK
>>> py3-biopython: Unpacking /var/cache/distfiles/biopython-1.85.tar.gz...
2025-10-30 14:18:57,157 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__
/usr/lib/python3.12/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!

        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:

        License :: Freely Distributable

        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************

!!
  self._finalize_license_expression()
2025-10-30 14:18:57,197 root INFO running bdist_wheel
2025-10-30 14:18:57,226 root INFO running build
2025-10-30 14:18:57,226 root INFO running build_py
2025-10-30 14:18:57,233 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio
2025-10-30 14:18:57,234 root INFO copying Bio/pairwise2.py -> build/lib.linux-loongarch64-cpython-312/Bio
2025-10-30 14:18:57,235 root INFO copying Bio/SeqRecord.py -> build/lib.linux-loongarch64-cpython-312/Bio
2025-10-30 14:18:57,235 root INFO copying Bio/_utils.py -> build/lib.linux-loongarch64-cpython-312/Bio
2025-10-30 14:18:57,236 root INFO copying Bio/MaxEntropy.py -> build/lib.linux-loongarch64-cpython-312/Bio
2025-10-30 14:18:57,236 root INFO copying Bio/MarkovModel.py -> build/lib.linux-loongarch64-cpython-312/Bio
2025-10-30 14:18:57,236 root INFO copying Bio/SeqFeature.py -> build/lib.linux-loongarch64-cpython-312/Bio
2025-10-30 14:18:57,237 root INFO copying Bio/File.py -> build/lib.linux-loongarch64-cpython-312/Bio
2025-10-30 14:18:57,237 root INFO copying Bio/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio
2025-10-30 14:18:57,238 root INFO copying Bio/LogisticRegression.py -> build/lib.linux-loongarch64-cpython-312/Bio
2025-10-30 14:18:57,238 root INFO copying Bio/Seq.py -> build/lib.linux-loongarch64-cpython-312/Bio
2025-10-30 14:18:57,239 root INFO copying Bio/bgzf.py -> build/lib.linux-loongarch64-cpython-312/Bio
2025-10-30 14:18:57,239 root INFO copying Bio/NaiveBayes.py -> build/lib.linux-loongarch64-cpython-312/Bio
2025-10-30 14:18:57,240 root INFO copying Bio/kNN.py -> build/lib.linux-loongarch64-cpython-312/Bio
2025-10-30 14:18:57,240 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Affy
2025-10-30 14:18:57,241 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Affy
2025-10-30 14:18:57,241 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-loongarch64-cpython-312/Bio/Affy
2025-10-30 14:18:57,242 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,242 root INFO copying Bio/Align/chain.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,243 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,243 root INFO copying Bio/Align/nexus.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,244 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,244 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,245 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,245 root INFO copying Bio/Align/sam.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,245 root INFO copying Bio/Align/bed.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,246 root INFO copying Bio/Align/hhr.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,246 root INFO copying Bio/Align/phylip.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,247 root INFO copying Bio/Align/msf.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,247 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,248 root INFO copying Bio/Align/mauve.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,248 root INFO copying Bio/Align/emboss.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,249 root INFO copying Bio/Align/tabular.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,249 root INFO copying Bio/Align/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,250 root INFO copying Bio/Align/analysis.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,250 root INFO copying Bio/Align/psl.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,251 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,251 root INFO copying Bio/Align/clustal.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,251 root INFO copying Bio/Align/a2m.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,252 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,252 root INFO copying Bio/Align/fasta.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,253 root INFO copying Bio/Align/maf.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,253 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Align/Applications
2025-10-30 14:18:57,254 root INFO copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align/Applications
2025-10-30 14:18:57,254 root INFO copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align/Applications
2025-10-30 14:18:57,255 root INFO copying Bio/Align/Applications/_Prank.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align/Applications
2025-10-30 14:18:57,255 root INFO copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align/Applications
2025-10-30 14:18:57,256 root INFO copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align/Applications
2025-10-30 14:18:57,256 root INFO copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align/Applications
2025-10-30 14:18:57,256 root INFO copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align/Applications
2025-10-30 14:18:57,257 root INFO copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align/Applications
2025-10-30 14:18:57,257 root INFO copying Bio/Align/Applications/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align/Applications
2025-10-30 14:18:57,258 root INFO copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align/Applications
2025-10-30 14:18:57,258 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices
2025-10-30 14:18:57,259 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices
2025-10-30 14:18:57,259 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/AlignIO
2025-10-30 14:18:57,260 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/AlignIO
2025-10-30 14:18:57,260 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/AlignIO
2025-10-30 14:18:57,261 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/AlignIO
2025-10-30 14:18:57,261 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/AlignIO
2025-10-30 14:18:57,261 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/AlignIO
2025-10-30 14:18:57,262 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/AlignIO
2025-10-30 14:18:57,262 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/AlignIO
2025-10-30 14:18:57,263 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/AlignIO
2025-10-30 14:18:57,263 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/AlignIO
2025-10-30 14:18:57,264 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/AlignIO
2025-10-30 14:18:57,264 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-loongarch64-cpython-312/Bio/AlignIO
2025-10-30 14:18:57,265 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Alphabet
2025-10-30 14:18:57,265 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Alphabet
2025-10-30 14:18:57,265 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Application
2025-10-30 14:18:57,266 root INFO copying Bio/Application/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Application
2025-10-30 14:18:57,266 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Blast
2025-10-30 14:18:57,267 root INFO copying Bio/Blast/_writers.py -> build/lib.linux-loongarch64-cpython-312/Bio/Blast
2025-10-30 14:18:57,267 root INFO copying Bio/Blast/Applications.py -> build/lib.linux-loongarch64-cpython-312/Bio/Blast
2025-10-30 14:18:57,268 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Blast
2025-10-30 14:18:57,268 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-loongarch64-cpython-312/Bio/Blast
2025-10-30 14:18:57,269 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-loongarch64-cpython-312/Bio/Blast
2025-10-30 14:18:57,269 root INFO copying Bio/Blast/_parser.py -> build/lib.linux-loongarch64-cpython-312/Bio/Blast
2025-10-30 14:18:57,270 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/CAPS
2025-10-30 14:18:57,270 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/CAPS
2025-10-30 14:18:57,271 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Cluster
2025-10-30 14:18:57,271 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Cluster
2025-10-30 14:18:57,271 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/codonalign
2025-10-30 14:18:57,272 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-loongarch64-cpython-312/Bio/codonalign
2025-10-30 14:18:57,272 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/codonalign
2025-10-30 14:18:57,273 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-loongarch64-cpython-312/Bio/codonalign
2025-10-30 14:18:57,273 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Compass
2025-10-30 14:18:57,274 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Compass
2025-10-30 14:18:57,274 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Data
2025-10-30 14:18:57,274 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-loongarch64-cpython-312/Bio/Data
2025-10-30 14:18:57,275 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-loongarch64-cpython-312/Bio/Data
2025-10-30 14:18:57,275 root INFO copying Bio/Data/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Data
2025-10-30 14:18:57,276 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-loongarch64-cpython-312/Bio/Data
2025-10-30 14:18:57,276 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Emboss
2025-10-30 14:18:57,277 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-loongarch64-cpython-312/Bio/Emboss
2025-10-30 14:18:57,277 root INFO copying Bio/Emboss/Applications.py -> build/lib.linux-loongarch64-cpython-312/Bio/Emboss
2025-10-30 14:18:57,278 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-loongarch64-cpython-312/Bio/Emboss
2025-10-30 14:18:57,278 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Emboss
2025-10-30 14:18:57,279 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Entrez
2025-10-30 14:18:57,279 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez
2025-10-30 14:18:57,279 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez
2025-10-30 14:18:57,280 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/ExPASy
2025-10-30 14:18:57,280 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-loongarch64-cpython-312/Bio/ExPASy
2025-10-30 14:18:57,281 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-loongarch64-cpython-312/Bio/ExPASy
2025-10-30 14:18:57,281 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-loongarch64-cpython-312/Bio/ExPASy
2025-10-30 14:18:57,282 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-loongarch64-cpython-312/Bio/ExPASy
2025-10-30 14:18:57,282 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/ExPASy
2025-10-30 14:18:57,282 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-loongarch64-cpython-312/Bio/ExPASy
2025-10-30 14:18:57,283 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/GenBank
2025-10-30 14:18:57,283 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-loongarch64-cpython-312/Bio/GenBank
2025-10-30 14:18:57,284 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-loongarch64-cpython-312/Bio/GenBank
2025-10-30 14:18:57,284 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/GenBank
2025-10-30 14:18:57,285 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-loongarch64-cpython-312/Bio/GenBank
2025-10-30 14:18:57,285 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Geo
2025-10-30 14:18:57,286 root INFO copying Bio/Geo/Record.py -> build/lib.linux-loongarch64-cpython-312/Bio/Geo
2025-10-30 14:18:57,286 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Geo
2025-10-30 14:18:57,287 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Graphics
2025-10-30 14:18:57,287 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics
2025-10-30 14:18:57,287 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics
2025-10-30 14:18:57,288 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics
2025-10-30 14:18:57,288 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics
2025-10-30 14:18:57,289 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics
2025-10-30 14:18:57,289 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics
2025-10-30 14:18:57,290 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics
2025-10-30 14:18:57,290 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram
2025-10-30 14:18:57,291 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram
2025-10-30 14:18:57,291 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram
2025-10-30 14:18:57,292 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram
2025-10-30 14:18:57,292 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram
2025-10-30 14:18:57,292 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram
2025-10-30 14:18:57,293 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram
2025-10-30 14:18:57,293 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram
2025-10-30 14:18:57,294 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram
2025-10-30 14:18:57,294 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram
2025-10-30 14:18:57,295 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram
2025-10-30 14:18:57,295 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram
2025-10-30 14:18:57,296 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram
2025-10-30 14:18:57,296 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/HMM
2025-10-30 14:18:57,296 root INFO copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-loongarch64-cpython-312/Bio/HMM
2025-10-30 14:18:57,297 root INFO copying Bio/HMM/Trainer.py -> build/lib.linux-loongarch64-cpython-312/Bio/HMM
2025-10-30 14:18:57,297 root INFO copying Bio/HMM/MarkovModel.py -> build/lib.linux-loongarch64-cpython-312/Bio/HMM
2025-10-30 14:18:57,298 root INFO copying Bio/HMM/Utilities.py -> build/lib.linux-loongarch64-cpython-312/Bio/HMM
2025-10-30 14:18:57,298 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/HMM
2025-10-30 14:18:57,299 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/KEGG
2025-10-30 14:18:57,299 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-loongarch64-cpython-312/Bio/KEGG
2025-10-30 14:18:57,299 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/KEGG
2025-10-30 14:18:57,300 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/KEGG/Compound
2025-10-30 14:18:57,300 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/KEGG/Compound
2025-10-30 14:18:57,301 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/KEGG/Enzyme
2025-10-30 14:18:57,301 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/KEGG/Enzyme
2025-10-30 14:18:57,302 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/KEGG/Gene
2025-10-30 14:18:57,302 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/KEGG/Gene
2025-10-30 14:18:57,303 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/KEGG/Map
2025-10-30 14:18:57,303 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/KEGG/Map
2025-10-30 14:18:57,303 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/PDB/mmtf
2025-10-30 14:18:57,304 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB/mmtf
2025-10-30 14:18:57,304 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB/mmtf
2025-10-30 14:18:57,305 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB/mmtf
2025-10-30 14:18:57,305 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/KEGG/KGML
2025-10-30 14:18:57,306 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-loongarch64-cpython-312/Bio/KEGG/KGML
2025-10-30 14:18:57,306 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/KEGG/KGML
2025-10-30 14:18:57,306 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-loongarch64-cpython-312/Bio/KEGG/KGML
2025-10-30 14:18:57,307 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Medline
2025-10-30 14:18:57,307 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Medline
2025-10-30 14:18:57,308 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/motifs
2025-10-30 14:18:57,308 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs
2025-10-30 14:18:57,309 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs
2025-10-30 14:18:57,309 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs
2025-10-30 14:18:57,310 root INFO copying Bio/motifs/meme.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs
2025-10-30 14:18:57,310 root INFO copying Bio/motifs/mast.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs
2025-10-30 14:18:57,310 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs
2025-10-30 14:18:57,311 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs
2025-10-30 14:18:57,311 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs
2025-10-30 14:18:57,312 root INFO copying Bio/motifs/xms.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs
2025-10-30 14:18:57,312 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs
2025-10-30 14:18:57,313 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs
2025-10-30 14:18:57,313 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/motifs/applications
2025-10-30 14:18:57,313 root INFO copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs/applications
2025-10-30 14:18:57,314 root INFO copying Bio/motifs/applications/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs/applications
2025-10-30 14:18:57,314 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/motifs/jaspar
2025-10-30 14:18:57,315 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs/jaspar
2025-10-30 14:18:57,315 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-loongarch64-cpython-312/Bio/motifs/jaspar
2025-10-30 14:18:57,316 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Nexus
2025-10-30 14:18:57,316 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-loongarch64-cpython-312/Bio/Nexus
2025-10-30 14:18:57,317 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-loongarch64-cpython-312/Bio/Nexus
2025-10-30 14:18:57,317 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-loongarch64-cpython-312/Bio/Nexus
2025-10-30 14:18:57,317 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Nexus
2025-10-30 14:18:57,318 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-loongarch64-cpython-312/Bio/Nexus
2025-10-30 14:18:57,319 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/NMR
2025-10-30 14:18:57,319 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-loongarch64-cpython-312/Bio/NMR
2025-10-30 14:18:57,319 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/NMR
2025-10-30 14:18:57,320 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-loongarch64-cpython-312/Bio/NMR
2025-10-30 14:18:57,320 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Pathway
2025-10-30 14:18:57,321 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Pathway
2025-10-30 14:18:57,321 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Pathway/Rep
2025-10-30 14:18:57,321 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-loongarch64-cpython-312/Bio/Pathway/Rep
2025-10-30 14:18:57,322 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-loongarch64-cpython-312/Bio/Pathway/Rep
2025-10-30 14:18:57,322 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Pathway/Rep
2025-10-30 14:18:57,323 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,324 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,324 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,325 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,325 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,326 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,326 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,327 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,327 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,328 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,328 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,329 root INFO copying Bio/PDB/PDBMLParser.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,329 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,329 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,330 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,330 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,331 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,331 root INFO copying Bio/PDB/alphafold_db.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,332 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,332 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,332 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,333 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,333 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,334 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,334 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,335 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,335 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,335 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,336 root INFO copying Bio/PDB/binary_cif.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,336 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,337 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,337 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,338 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,338 root INFO copying Bio/PDB/Model.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,339 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,339 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,339 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,340 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,340 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,341 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,341 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:57,342 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/phenotype
2025-10-30 14:18:57,342 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-loongarch64-cpython-312/Bio/phenotype
2025-10-30 14:18:57,343 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/phenotype
2025-10-30 14:18:57,343 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-loongarch64-cpython-312/Bio/phenotype
2025-10-30 14:18:57,344 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/PopGen
2025-10-30 14:18:57,344 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/PopGen
2025-10-30 14:18:57,344 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/PopGen/GenePop
2025-10-30 14:18:57,345 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-loongarch64-cpython-312/Bio/PopGen/GenePop
2025-10-30 14:18:57,345 root INFO copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-loongarch64-cpython-312/Bio/PopGen/GenePop
2025-10-30 14:18:57,346 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-loongarch64-cpython-312/Bio/PopGen/GenePop
2025-10-30 14:18:57,346 root INFO copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-loongarch64-cpython-312/Bio/PopGen/GenePop
2025-10-30 14:18:57,347 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/PopGen/GenePop
2025-10-30 14:18:57,347 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Restriction
2025-10-30 14:18:57,347 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-loongarch64-cpython-312/Bio/Restriction
2025-10-30 14:18:57,348 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-loongarch64-cpython-312/Bio/Restriction
2025-10-30 14:18:57,348 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Restriction
2025-10-30 14:18:57,349 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-loongarch64-cpython-312/Bio/Restriction
2025-10-30 14:18:57,350 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SCOP
2025-10-30 14:18:57,350 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-loongarch64-cpython-312/Bio/SCOP
2025-10-30 14:18:57,351 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-loongarch64-cpython-312/Bio/SCOP
2025-10-30 14:18:57,351 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-loongarch64-cpython-312/Bio/SCOP
2025-10-30 14:18:57,352 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-loongarch64-cpython-312/Bio/SCOP
2025-10-30 14:18:57,352 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-loongarch64-cpython-312/Bio/SCOP
2025-10-30 14:18:57,353 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SCOP
2025-10-30 14:18:57,353 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-loongarch64-cpython-312/Bio/SCOP
2025-10-30 14:18:57,354 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SearchIO
2025-10-30 14:18:57,354 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO
2025-10-30 14:18:57,354 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO
2025-10-30 14:18:57,355 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO
2025-10-30 14:18:57,355 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO
2025-10-30 14:18:57,356 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO
2025-10-30 14:18:57,356 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_model
2025-10-30 14:18:57,357 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_model
2025-10-30 14:18:57,357 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_model
2025-10-30 14:18:57,358 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_model
2025-10-30 14:18:57,358 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_model
2025-10-30 14:18:57,358 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_model
2025-10-30 14:18:57,359 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/BlastIO
2025-10-30 14:18:57,359 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/BlastIO
2025-10-30 14:18:57,360 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/BlastIO
2025-10-30 14:18:57,360 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/BlastIO
2025-10-30 14:18:57,361 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HHsuiteIO
2025-10-30 14:18:57,361 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HHsuiteIO
2025-10-30 14:18:57,362 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HHsuiteIO
2025-10-30 14:18:57,362 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO
2025-10-30 14:18:57,363 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO
2025-10-30 14:18:57,363 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO
2025-10-30 14:18:57,363 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO
2025-10-30 14:18:57,364 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO
2025-10-30 14:18:57,364 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO
2025-10-30 14:18:57,365 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO
2025-10-30 14:18:57,365 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/ExonerateIO
2025-10-30 14:18:57,366 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/ExonerateIO
2025-10-30 14:18:57,366 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/ExonerateIO
2025-10-30 14:18:57,367 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/ExonerateIO
2025-10-30 14:18:57,367 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/ExonerateIO
2025-10-30 14:18:57,367 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/ExonerateIO
2025-10-30 14:18:57,368 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/InterproscanIO
2025-10-30 14:18:57,368 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/InterproscanIO
2025-10-30 14:18:57,369 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/InterproscanIO
2025-10-30 14:18:57,370 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:57,370 root INFO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:57,370 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:57,371 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:57,371 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:57,372 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:57,372 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:57,373 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:57,373 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:57,373 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:57,374 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:57,374 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:57,375 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:57,375 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:57,376 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:57,376 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:57,377 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:57,377 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:57,378 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:57,378 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:57,378 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:57,379 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:57,379 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:57,380 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:57,380 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils
2025-10-30 14:18:57,381 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils
2025-10-30 14:18:57,381 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils
2025-10-30 14:18:57,382 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils
2025-10-30 14:18:57,382 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils
2025-10-30 14:18:57,382 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils
2025-10-30 14:18:57,383 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils
2025-10-30 14:18:57,383 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils
2025-10-30 14:18:57,384 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Sequencing
2025-10-30 14:18:57,384 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-loongarch64-cpython-312/Bio/Sequencing
2025-10-30 14:18:57,385 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Sequencing
2025-10-30 14:18:57,385 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-loongarch64-cpython-312/Bio/Sequencing
2025-10-30 14:18:57,386 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Sequencing/Applications
2025-10-30 14:18:57,386 root INFO copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-loongarch64-cpython-312/Bio/Sequencing/Applications
2025-10-30 14:18:57,386 root INFO copying Bio/Sequencing/Applications/_bwa.py -> build/lib.linux-loongarch64-cpython-312/Bio/Sequencing/Applications
2025-10-30 14:18:57,387 root INFO copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Sequencing/Applications
2025-10-30 14:18:57,387 root INFO copying Bio/Sequencing/Applications/_samtools.py -> build/lib.linux-loongarch64-cpython-312/Bio/Sequencing/Applications
2025-10-30 14:18:57,388 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SVDSuperimposer
2025-10-30 14:18:57,388 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SVDSuperimposer
2025-10-30 14:18:57,389 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/SwissProt
2025-10-30 14:18:57,389 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-loongarch64-cpython-312/Bio/SwissProt
2025-10-30 14:18:57,389 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/SwissProt
2025-10-30 14:18:57,390 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/TogoWS
2025-10-30 14:18:57,390 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/TogoWS
2025-10-30 14:18:57,391 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Phylo
2025-10-30 14:18:57,391 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo
2025-10-30 14:18:57,392 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo
2025-10-30 14:18:57,392 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo
2025-10-30 14:18:57,393 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo
2025-10-30 14:18:57,393 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo
2025-10-30 14:18:57,394 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo
2025-10-30 14:18:57,394 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo
2025-10-30 14:18:57,395 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo
2025-10-30 14:18:57,395 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo
2025-10-30 14:18:57,396 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo
2025-10-30 14:18:57,396 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo
2025-10-30 14:18:57,396 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo
2025-10-30 14:18:57,397 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo
2025-10-30 14:18:57,397 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo
2025-10-30 14:18:57,398 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo
2025-10-30 14:18:57,398 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo
2025-10-30 14:18:57,399 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Phylo/Applications
2025-10-30 14:18:57,399 root INFO copying Bio/Phylo/Applications/_Phyml.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo/Applications
2025-10-30 14:18:57,400 root INFO copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo/Applications
2025-10-30 14:18:57,400 root INFO copying Bio/Phylo/Applications/_Raxml.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo/Applications
2025-10-30 14:18:57,401 root INFO copying Bio/Phylo/Applications/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo/Applications
2025-10-30 14:18:57,401 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML
2025-10-30 14:18:57,402 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML
2025-10-30 14:18:57,402 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML
2025-10-30 14:18:57,402 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML
2025-10-30 14:18:57,403 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML
2025-10-30 14:18:57,403 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML
2025-10-30 14:18:57,404 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML
2025-10-30 14:18:57,404 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML
2025-10-30 14:18:57,405 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML
2025-10-30 14:18:57,405 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML
2025-10-30 14:18:57,406 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/UniGene
2025-10-30 14:18:57,406 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/UniGene
2025-10-30 14:18:57,406 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/UniProt
2025-10-30 14:18:57,407 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-loongarch64-cpython-312/Bio/UniProt
2025-10-30 14:18:57,407 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-loongarch64-cpython-312/Bio/UniProt
2025-10-30 14:18:57,408 root INFO creating build/lib.linux-loongarch64-cpython-312/BioSQL
2025-10-30 14:18:57,408 root INFO copying BioSQL/Loader.py -> build/lib.linux-loongarch64-cpython-312/BioSQL
2025-10-30 14:18:57,409 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-loongarch64-cpython-312/BioSQL
2025-10-30 14:18:57,409 root INFO copying BioSQL/__init__.py -> build/lib.linux-loongarch64-cpython-312/BioSQL
2025-10-30 14:18:57,410 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-loongarch64-cpython-312/BioSQL
2025-10-30 14:18:57,410 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-loongarch64-cpython-312/BioSQL
2025-10-30 14:18:57,411 root INFO running egg_info
2025-10-30 14:18:57,415 root INFO writing biopython.egg-info/PKG-INFO
2025-10-30 14:18:57,417 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt
2025-10-30 14:18:57,417 root INFO writing requirements to biopython.egg-info/requires.txt
2025-10-30 14:18:57,417 root INFO writing top-level names to biopython.egg-info/top_level.txt
2025-10-30 14:18:57,447 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt'
2025-10-30 14:18:57,549 root INFO reading manifest template 'MANIFEST.in'
2025-10-30 14:18:57,698 root WARNING warning: no previously-included files found matching 'Doc/_build'
2025-10-30 14:18:57,706 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip'
2025-10-30 14:18:57,711 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution
2025-10-30 14:18:57,715 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution
2025-10-30 14:18:57,720 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution
2025-10-30 14:18:57,724 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution
2025-10-30 14:18:57,734 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt'
2025-10-30 14:18:57,734 root INFO adding license file 'LICENSE'
2025-10-30 14:18:57,734 root INFO adding license file 'LICENSE.rst'
2025-10-30 14:18:57,796 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt'
/usr/lib/python3.12/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are
        already explicitly excluding 'Bio.Align.substitution_matrices.data' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
/usr/lib/python3.12/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'Bio.Entrez.DTDs' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'Bio.Entrez.DTDs' to be distributed and are
        already explicitly excluding 'Bio.Entrez.DTDs' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
/usr/lib/python3.12/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'Bio.Entrez.XSDs' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'Bio.Entrez.XSDs' to be distributed and are
        already explicitly excluding 'Bio.Entrez.XSDs' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
2025-10-30 14:18:57,854 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-loongarch64-cpython-312/Bio
2025-10-30 14:18:57,854 root INFO copying Bio/py.typed -> build/lib.linux-loongarch64-cpython-312/Bio
2025-10-30 14:18:57,855 root INFO copying Bio/Align/_aligncore.c -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,855 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,856 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:57,857 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,857 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,857 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,858 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,858 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,859 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,859 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,860 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,860 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,861 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,861 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,861 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,862 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,862 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,863 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,863 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,864 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,864 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,865 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,865 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,866 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,866 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,866 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,867 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,867 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,868 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,868 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,869 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
2025-10-30 14:18:57,869 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data
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2025-10-30 14:18:57,997 root INFO copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs
2025-10-30 14:18:57,997 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs
2025-10-30 14:18:57,998 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs
2025-10-30 14:18:57,998 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs
2025-10-30 14:18:57,998 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs
2025-10-30 14:18:57,999 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs
2025-10-30 14:18:57,999 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs
2025-10-30 14:18:58,000 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs
2025-10-30 14:18:58,000 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs
2025-10-30 14:18:58,001 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs
2025-10-30 14:18:58,001 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs
2025-10-30 14:18:58,002 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs
2025-10-30 14:18:58,002 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs
2025-10-30 14:18:58,003 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs
2025-10-30 14:18:58,003 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs
2025-10-30 14:18:58,003 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs
2025-10-30 14:18:58,004 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs
2025-10-30 14:18:58,004 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs
2025-10-30 14:18:58,005 root INFO creating build/lib.linux-loongarch64-cpython-312/Bio/Entrez/XSDs
2025-10-30 14:18:58,005 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/XSDs
2025-10-30 14:18:58,005 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/XSDs
2025-10-30 14:18:58,006 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-loongarch64-cpython-312/Bio/Entrez/XSDs
2025-10-30 14:18:58,006 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-loongarch64-cpython-312/Bio/motifs
2025-10-30 14:18:58,007 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-loongarch64-cpython-312/Bio/Nexus
2025-10-30 14:18:58,007 root INFO copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:58,008 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:58,008 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:18:58,009 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:18:58,009 root INFO copying BioSQL/py.typed -> build/lib.linux-loongarch64-cpython-312/BioSQL
2025-10-30 14:18:58,022 root INFO running build_ext
2025-10-30 14:18:58,025 root INFO building 'Bio.Align._codonaligner' extension
2025-10-30 14:18:58,025 root INFO creating build/temp.linux-loongarch64-cpython-312/Bio/Align
2025-10-30 14:18:58,026 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_codonaligner.c -o build/temp.linux-loongarch64-cpython-312/Bio/Align/_codonaligner.o
2025-10-30 14:18:58,880 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-312/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-312/Bio/Align/_codonaligner.cpython-312-loongarch64-linux-musl.so
2025-10-30 14:18:58,896 root INFO building 'Bio.Align._pairwisealigner' extension
2025-10-30 14:18:58,897 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-loongarch64-cpython-312/Bio/Align/_pairwisealigner.o
2025-10-30 14:19:08,837 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-312/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-loongarch64-linux-musl.so
2025-10-30 14:19:08,860 root INFO building 'Bio.Align._aligncore' extension
2025-10-30 14:19:08,861 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_aligncore.c -o build/temp.linux-loongarch64-cpython-312/Bio/Align/_aligncore.o
2025-10-30 14:19:09,214 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-312/Bio/Align/_aligncore.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-312/Bio/Align/_aligncore.cpython-312-loongarch64-linux-musl.so
2025-10-30 14:19:09,229 root INFO building 'Bio.cpairwise2' extension
2025-10-30 14:19:09,230 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.linux-loongarch64-cpython-312/Bio/cpairwise2module.o
2025-10-30 14:19:09,670 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-312/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-312/Bio/cpairwise2.cpython-312-loongarch64-linux-musl.so
2025-10-30 14:19:09,685 root INFO building 'Bio.Nexus.cnexus' extension
2025-10-30 14:19:09,686 root INFO creating build/temp.linux-loongarch64-cpython-312/Bio/Nexus
2025-10-30 14:19:09,686 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.linux-loongarch64-cpython-312/Bio/Nexus/cnexus.o
2025-10-30 14:19:09,861 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-312/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-312/Bio/Nexus/cnexus.cpython-312-loongarch64-linux-musl.so
2025-10-30 14:19:09,875 root INFO building 'Bio.motifs._pwm' extension
2025-10-30 14:19:09,876 root INFO creating build/temp.linux-loongarch64-cpython-312/Bio/motifs
2025-10-30 14:19:09,876 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.linux-loongarch64-cpython-312/Bio/motifs/_pwm.o
2025-10-30 14:19:10,095 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-312/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-312/Bio/motifs/_pwm.cpython-312-loongarch64-linux-musl.so
2025-10-30 14:19:10,111 root INFO building 'Bio.Cluster._cluster' extension
2025-10-30 14:19:10,112 root INFO creating build/temp.linux-loongarch64-cpython-312/Bio/Cluster
2025-10-30 14:19:10,113 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.linux-loongarch64-cpython-312/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY
2025-10-30 14:19:13,331 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.linux-loongarch64-cpython-312/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY
2025-10-30 14:19:14,391 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-312/Bio/Cluster/cluster.o build/temp.linux-loongarch64-cpython-312/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-312/Bio/Cluster/_cluster.cpython-312-loongarch64-linux-musl.so
2025-10-30 14:19:14,410 root INFO building 'Bio.PDB.ccealign' extension
2025-10-30 14:19:14,410 root INFO creating build/temp.linux-loongarch64-cpython-312/Bio/PDB
2025-10-30 14:19:14,411 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-loongarch64-cpython-312/Bio/PDB/ccealignmodule.o
2025-10-30 14:19:14,899 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-312/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-312/Bio/PDB/ccealign.cpython-312-loongarch64-linux-musl.so
2025-10-30 14:19:14,914 root INFO building 'Bio.PDB.kdtrees' extension
2025-10-30 14:19:14,915 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.linux-loongarch64-cpython-312/Bio/PDB/kdtrees.o
2025-10-30 14:19:15,546 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-312/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-312/Bio/PDB/kdtrees.cpython-312-loongarch64-linux-musl.so
2025-10-30 14:19:15,562 root INFO building 'Bio.PDB._bcif_helper' extension
2025-10-30 14:19:15,562 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-loongarch64-cpython-312/Bio/PDB/bcifhelpermodule.o
2025-10-30 14:19:15,787 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-312/Bio/PDB/bcifhelpermodule.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-312/Bio/PDB/_bcif_helper.cpython-312-loongarch64-linux-musl.so
2025-10-30 14:19:15,802 root INFO building 'Bio.SeqIO._twoBitIO' extension
2025-10-30 14:19:15,803 root INFO creating build/temp.linux-loongarch64-cpython-312/Bio/SeqIO
2025-10-30 14:19:15,803 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-loongarch64-cpython-312/Bio/SeqIO/_twoBitIO.o
2025-10-30 14:19:16,080 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-312/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-loongarch64-linux-musl.so
2025-10-30 14:19:16,109 root INFO installing to build/bdist.linux-loongarch64/wheel
2025-10-30 14:19:16,109 root INFO running install
2025-10-30 14:19:16,128 root INFO running install_lib
2025-10-30 14:19:16,135 root INFO creating build/bdist.linux-loongarch64/wheel
2025-10-30 14:19:16,136 root INFO creating build/bdist.linux-loongarch64/wheel/Bio
2025-10-30 14:19:16,136 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/PopGen
2025-10-30 14:19:16,137 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/PopGen/GenePop
2025-10-30 14:19:16,137 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-loongarch64/wheel/./Bio/PopGen/GenePop
2025-10-30 14:19:16,137 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PopGen/GenePop/Controller.py -> build/bdist.linux-loongarch64/wheel/./Bio/PopGen/GenePop
2025-10-30 14:19:16,138 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-loongarch64/wheel/./Bio/PopGen/GenePop
2025-10-30 14:19:16,138 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PopGen/GenePop/EasyController.py -> build/bdist.linux-loongarch64/wheel/./Bio/PopGen/GenePop
2025-10-30 14:19:16,138 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/PopGen/GenePop
2025-10-30 14:19:16,139 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PopGen/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/PopGen
2025-10-30 14:19:16,139 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/NMR
2025-10-30 14:19:16,139 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/NMR/xpktools.py -> build/bdist.linux-loongarch64/wheel/./Bio/NMR
2025-10-30 14:19:16,140 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/NMR/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/NMR
2025-10-30 14:19:16,140 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/NMR/NOEtools.py -> build/bdist.linux-loongarch64/wheel/./Bio/NMR
2025-10-30 14:19:16,141 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/ExPASy
2025-10-30 14:19:16,141 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-loongarch64/wheel/./Bio/ExPASy
2025-10-30 14:19:16,141 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/ExPASy/Prodoc.py -> build/bdist.linux-loongarch64/wheel/./Bio/ExPASy
2025-10-30 14:19:16,142 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/ExPASy/Prosite.py -> build/bdist.linux-loongarch64/wheel/./Bio/ExPASy
2025-10-30 14:19:16,142 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/ExPASy/Enzyme.py -> build/bdist.linux-loongarch64/wheel/./Bio/ExPASy
2025-10-30 14:19:16,142 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/ExPASy/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/ExPASy
2025-10-30 14:19:16,143 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-loongarch64/wheel/./Bio/ExPASy
2025-10-30 14:19:16,143 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/pairwise2.py -> build/bdist.linux-loongarch64/wheel/./Bio
2025-10-30 14:19:16,144 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/AlignIO
2025-10-30 14:19:16,144 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/AlignIO/MsfIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO
2025-10-30 14:19:16,144 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO
2025-10-30 14:19:16,145 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO
2025-10-30 14:19:16,145 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO
2025-10-30 14:19:16,145 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/AlignIO/MafIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO
2025-10-30 14:19:16,146 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/AlignIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO
2025-10-30 14:19:16,146 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/AlignIO/FastaIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO
2025-10-30 14:19:16,146 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO
2025-10-30 14:19:16,147 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/AlignIO/MauveIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO
2025-10-30 14:19:16,147 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/AlignIO/NexusIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO
2025-10-30 14:19:16,147 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/AlignIO/Interfaces.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO
2025-10-30 14:19:16,148 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqRecord.py -> build/bdist.linux-loongarch64/wheel/./Bio
2025-10-30 14:19:16,148 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/_utils.py -> build/bdist.linux-loongarch64/wheel/./Bio
2025-10-30 14:19:16,149 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/cpairwise2module.c -> build/bdist.linux-loongarch64/wheel/./Bio
2025-10-30 14:19:16,149 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/CAPS
2025-10-30 14:19:16,149 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/CAPS/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/CAPS
2025-10-30 14:19:16,150 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Blast
2025-10-30 14:19:16,150 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Blast/_writers.py -> build/bdist.linux-loongarch64/wheel/./Bio/Blast
2025-10-30 14:19:16,151 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Blast/Applications.py -> build/bdist.linux-loongarch64/wheel/./Bio/Blast
2025-10-30 14:19:16,151 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Blast/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Blast
2025-10-30 14:19:16,151 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Blast/NCBIWWW.py -> build/bdist.linux-loongarch64/wheel/./Bio/Blast
2025-10-30 14:19:16,152 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Blast/NCBIXML.py -> build/bdist.linux-loongarch64/wheel/./Bio/Blast
2025-10-30 14:19:16,152 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Blast/_parser.py -> build/bdist.linux-loongarch64/wheel/./Bio/Blast
2025-10-30 14:19:16,153 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/MaxEntropy.py -> build/bdist.linux-loongarch64/wheel/./Bio
2025-10-30 14:19:16,153 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Emboss
2025-10-30 14:19:16,153 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-loongarch64/wheel/./Bio/Emboss
2025-10-30 14:19:16,154 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Emboss/Applications.py -> build/bdist.linux-loongarch64/wheel/./Bio/Emboss
2025-10-30 14:19:16,154 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Emboss/Primer3.py -> build/bdist.linux-loongarch64/wheel/./Bio/Emboss
2025-10-30 14:19:16,154 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Emboss/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Emboss
2025-10-30 14:19:16,155 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/TogoWS
2025-10-30 14:19:16,155 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/TogoWS/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/TogoWS
2025-10-30 14:19:16,156 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/PDB
2025-10-30 14:19:16,156 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/Chain.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,156 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,157 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/Structure.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,157 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/NACCESS.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,157 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/MMCIFParser.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,158 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/internal_coords.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,158 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/StructureAlignment.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,159 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/kdtrees.cpython-312-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,159 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/Polypeptide.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,159 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/StructureBuilder.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,160 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/Selection.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,160 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/PICIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,161 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/PDBMLParser.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,161 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/Dice.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,161 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/ic_rebuild.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,162 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,162 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/ccealign.cpython-312-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,162 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/cealign.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,163 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/DSSP.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,163 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/alphafold_db.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,163 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/HSExposure.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,164 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/PDBIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,164 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/_bcif_helper.cpython-312-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,165 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/Residue.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,165 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/ic_data.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,165 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/PSEA.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,166 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/FragmentMapper.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,166 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/vectors.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,166 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,167 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,167 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/mmcifio.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,167 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/binary_cif.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,168 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/NeighborSearch.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,168 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,168 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/Atom.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,169 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/ResidueDepth.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,169 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/PDBList.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,169 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/Model.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,170 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/Entity.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,170 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/PDBParser.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,170 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/kdtrees.c -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,171 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/Superimposer.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,171 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/ccealignmodule.c -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,172 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/qcprot.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,172 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/SCADIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,172 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/SASA.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,173 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/PDB/mmtf
2025-10-30 14:19:16,173 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB/mmtf
2025-10-30 14:19:16,174 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB/mmtf
2025-10-30 14:19:16,174 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB/mmtf
2025-10-30 14:19:16,174 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/PDB/PDBExceptions.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB
2025-10-30 14:19:16,175 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SwissProt
2025-10-30 14:19:16,175 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SwissProt/KeyWList.py -> build/bdist.linux-loongarch64/wheel/./Bio/SwissProt
2025-10-30 14:19:16,175 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SwissProt/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SwissProt
2025-10-30 14:19:16,176 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SeqUtils
2025-10-30 14:19:16,176 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqUtils
2025-10-30 14:19:16,176 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqUtils
2025-10-30 14:19:16,177 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqUtils
2025-10-30 14:19:16,177 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqUtils
2025-10-30 14:19:16,178 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqUtils
2025-10-30 14:19:16,178 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils/lcc.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqUtils
2025-10-30 14:19:16,178 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqUtils
2025-10-30 14:19:16,179 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Geo
2025-10-30 14:19:16,179 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Geo/Record.py -> build/bdist.linux-loongarch64/wheel/./Bio/Geo
2025-10-30 14:19:16,179 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Geo/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Geo
2025-10-30 14:19:16,180 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/py.typed -> build/bdist.linux-loongarch64/wheel/./Bio
2025-10-30 14:19:16,180 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/MarkovModel.py -> build/bdist.linux-loongarch64/wheel/./Bio
2025-10-30 14:19:16,181 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/UniProt
2025-10-30 14:19:16,181 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/UniProt/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/UniProt
2025-10-30 14:19:16,181 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/UniProt/GOA.py -> build/bdist.linux-loongarch64/wheel/./Bio/UniProt
2025-10-30 14:19:16,182 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SCOP
2025-10-30 14:19:16,182 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SCOP/Hie.py -> build/bdist.linux-loongarch64/wheel/./Bio/SCOP
2025-10-30 14:19:16,182 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SCOP/Raf.py -> build/bdist.linux-loongarch64/wheel/./Bio/SCOP
2025-10-30 14:19:16,183 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SCOP/Dom.py -> build/bdist.linux-loongarch64/wheel/./Bio/SCOP
2025-10-30 14:19:16,183 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SCOP/Cla.py -> build/bdist.linux-loongarch64/wheel/./Bio/SCOP
2025-10-30 14:19:16,183 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SCOP/Des.py -> build/bdist.linux-loongarch64/wheel/./Bio/SCOP
2025-10-30 14:19:16,184 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SCOP/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SCOP
2025-10-30 14:19:16,184 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SCOP/Residues.py -> build/bdist.linux-loongarch64/wheel/./Bio/SCOP
2025-10-30 14:19:16,184 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SearchIO
2025-10-30 14:19:16,185 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_utils.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO
2025-10-30 14:19:16,185 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_index.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO
2025-10-30 14:19:16,186 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SearchIO/_model
2025-10-30 14:19:16,186 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_model/query.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/_model
2025-10-30 14:19:16,186 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_model/_base.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/_model
2025-10-30 14:19:16,187 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_model/hit.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/_model
2025-10-30 14:19:16,187 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/_model
2025-10-30 14:19:16,187 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/_model
2025-10-30 14:19:16,188 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SearchIO/BlastIO
2025-10-30 14:19:16,188 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/BlastIO
2025-10-30 14:19:16,189 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/BlastIO
2025-10-30 14:19:16,189 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/BlastIO
2025-10-30 14:19:16,190 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SearchIO/HmmerIO
2025-10-30 14:19:16,190 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/HmmerIO
2025-10-30 14:19:16,190 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/HmmerIO
2025-10-30 14:19:16,191 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/HmmerIO
2025-10-30 14:19:16,191 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/HmmerIO
2025-10-30 14:19:16,191 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/HmmerIO
2025-10-30 14:19:16,192 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/HmmerIO
2025-10-30 14:19:16,192 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO
2025-10-30 14:19:16,193 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SearchIO/InterproscanIO
2025-10-30 14:19:16,193 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/InterproscanIO
2025-10-30 14:19:16,193 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/InterproscanIO
2025-10-30 14:19:16,194 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SearchIO/ExonerateIO
2025-10-30 14:19:16,194 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/ExonerateIO
2025-10-30 14:19:16,195 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/ExonerateIO
2025-10-30 14:19:16,195 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/ExonerateIO
2025-10-30 14:19:16,195 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/ExonerateIO
2025-10-30 14:19:16,196 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/ExonerateIO
2025-10-30 14:19:16,196 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/FastaIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO
2025-10-30 14:19:16,196 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SearchIO/HHsuiteIO
2025-10-30 14:19:16,197 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/HHsuiteIO
2025-10-30 14:19:16,197 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/HHsuiteIO
2025-10-30 14:19:16,198 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SearchIO/BlatIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO
2025-10-30 14:19:16,198 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/codonalign
2025-10-30 14:19:16,198 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/codonalign/codonseq.py -> build/bdist.linux-loongarch64/wheel/./Bio/codonalign
2025-10-30 14:19:16,199 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/codonalign/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/codonalign
2025-10-30 14:19:16,199 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/codonalign/codonalignment.py -> build/bdist.linux-loongarch64/wheel/./Bio/codonalign
2025-10-30 14:19:16,200 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Sequencing
2025-10-30 14:19:16,200 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Sequencing/Phd.py -> build/bdist.linux-loongarch64/wheel/./Bio/Sequencing
2025-10-30 14:19:16,200 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Sequencing/Applications
2025-10-30 14:19:16,201 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Sequencing/Applications/_Novoalign.py -> build/bdist.linux-loongarch64/wheel/./Bio/Sequencing/Applications
2025-10-30 14:19:16,201 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Sequencing/Applications/_bwa.py -> build/bdist.linux-loongarch64/wheel/./Bio/Sequencing/Applications
2025-10-30 14:19:16,201 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Sequencing/Applications/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Sequencing/Applications
2025-10-30 14:19:16,202 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Sequencing/Applications/_samtools.py -> build/bdist.linux-loongarch64/wheel/./Bio/Sequencing/Applications
2025-10-30 14:19:16,202 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Sequencing/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Sequencing
2025-10-30 14:19:16,202 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Sequencing/Ace.py -> build/bdist.linux-loongarch64/wheel/./Bio/Sequencing
2025-10-30 14:19:16,203 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Application
2025-10-30 14:19:16,203 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Application/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Application
2025-10-30 14:19:16,204 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Pathway
2025-10-30 14:19:16,204 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Pathway/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Pathway
2025-10-30 14:19:16,204 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Pathway/Rep
2025-10-30 14:19:16,205 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-loongarch64/wheel/./Bio/Pathway/Rep
2025-10-30 14:19:16,205 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-loongarch64/wheel/./Bio/Pathway/Rep
2025-10-30 14:19:16,205 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Pathway/Rep
2025-10-30 14:19:16,206 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Compass
2025-10-30 14:19:16,206 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Compass/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Compass
2025-10-30 14:19:16,207 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/GenBank
2025-10-30 14:19:16,207 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/GenBank/utils.py -> build/bdist.linux-loongarch64/wheel/./Bio/GenBank
2025-10-30 14:19:16,207 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/GenBank/Record.py -> build/bdist.linux-loongarch64/wheel/./Bio/GenBank
2025-10-30 14:19:16,208 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/GenBank/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/GenBank
2025-10-30 14:19:16,208 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/GenBank/Scanner.py -> build/bdist.linux-loongarch64/wheel/./Bio/GenBank
2025-10-30 14:19:16,209 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/motifs
2025-10-30 14:19:16,209 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/thresholds.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs
2025-10-30 14:19:16,209 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/clusterbuster.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs
2025-10-30 14:19:16,210 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/_pwm.cpython-312-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/motifs
2025-10-30 14:19:16,210 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/matrix.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs
2025-10-30 14:19:16,210 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/meme.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs
2025-10-30 14:19:16,211 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/mast.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs
2025-10-30 14:19:16,211 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/minimal.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs
2025-10-30 14:19:16,211 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/pfm.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs
2025-10-30 14:19:16,212 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/_pwm.c -> build/bdist.linux-loongarch64/wheel/./Bio/motifs
2025-10-30 14:19:16,212 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs
2025-10-30 14:19:16,213 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/motifs/applications
2025-10-30 14:19:16,213 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/applications/_xxmotif.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs/applications
2025-10-30 14:19:16,213 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/applications/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs/applications
2025-10-30 14:19:16,214 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/xms.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs
2025-10-30 14:19:16,214 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/alignace.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs
2025-10-30 14:19:16,214 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/motifs/jaspar
2025-10-30 14:19:16,215 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs/jaspar
2025-10-30 14:19:16,215 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/jaspar/db.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs/jaspar
2025-10-30 14:19:16,215 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/motifs/transfac.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs
2025-10-30 14:19:16,216 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Medline
2025-10-30 14:19:16,216 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Medline/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Medline
2025-10-30 14:19:16,217 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SeqIO
2025-10-30 14:19:16,217 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,217 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/GfaIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,218 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,218 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/AbiIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,219 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/NibIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,219 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/SwissIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,219 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/TabIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,220 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/PirIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,220 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,220 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/SffIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,221 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/IgIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,221 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,221 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/_index.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,222 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/PdbIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,222 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,223 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,223 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,223 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,224 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/QualityIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,224 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/GckIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,224 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/PhdIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,225 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/FastaIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,225 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,226 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/AceIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,226 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqIO/Interfaces.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO
2025-10-30 14:19:16,226 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SeqFeature.py -> build/bdist.linux-loongarch64/wheel/./Bio
2025-10-30 14:19:16,227 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/UniGene
2025-10-30 14:19:16,227 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/UniGene/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/UniGene
2025-10-30 14:19:16,228 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Align
2025-10-30 14:19:16,228 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/chain.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,228 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/_aligncore.cpython-312-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,229 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/AlignInfo.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,229 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/nexus.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,229 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/interfaces.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,230 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/exonerate.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,230 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Align/substitution_matrices
2025-10-30 14:19:16,231 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,231 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,231 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,232 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,232 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,232 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,233 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,233 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,233 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,234 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,234 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,234 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,235 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,235 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,235 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,236 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,236 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,236 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,237 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,237 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,237 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,238 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,238 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,238 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,239 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,239 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,239 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,240 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,240 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,240 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,241 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data
2025-10-30 14:19:16,241 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices
2025-10-30 14:19:16,241 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/bigmaf.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,242 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/sam.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,242 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/bed.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,242 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/hhr.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,243 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/phylip.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,243 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Align/Applications
2025-10-30 14:19:16,244 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/Applications/_Muscle.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align/Applications
2025-10-30 14:19:16,244 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/Applications/_MSAProbs.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align/Applications
2025-10-30 14:19:16,244 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/Applications/_Prank.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align/Applications
2025-10-30 14:19:16,245 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/Applications/_Clustalw.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align/Applications
2025-10-30 14:19:16,245 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/Applications/_Probcons.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align/Applications
2025-10-30 14:19:16,245 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/Applications/_Mafft.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align/Applications
2025-10-30 14:19:16,246 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/Applications/_Dialign.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align/Applications
2025-10-30 14:19:16,246 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/Applications/_ClustalOmega.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align/Applications
2025-10-30 14:19:16,246 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/Applications/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align/Applications
2025-10-30 14:19:16,247 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/Applications/_TCoffee.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align/Applications
2025-10-30 14:19:16,247 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/msf.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,247 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/bigbed.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,248 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/mauve.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,248 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/_pairwisealigner.c -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,249 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/_aligncore.c -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,249 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/emboss.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,250 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/tabular.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,250 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,250 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/analysis.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,251 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/psl.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,251 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,252 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/_codonaligner.c -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,252 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/_codonaligner.cpython-312-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,253 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/bigpsl.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,253 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/clustal.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,253 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/a2m.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,254 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/stockholm.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,254 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/fasta.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,254 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Align/maf.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align
2025-10-30 14:19:16,255 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/File.py -> build/bdist.linux-loongarch64/wheel/./Bio
2025-10-30 14:19:16,255 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Phylo
2025-10-30 14:19:16,256 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/NewickIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo
2025-10-30 14:19:16,256 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PhyloXML.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo
2025-10-30 14:19:16,256 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/_utils.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo
2025-10-30 14:19:16,257 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo
2025-10-30 14:19:16,257 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/NeXML.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo
2025-10-30 14:19:16,258 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Phylo/PAML
2025-10-30 14:19:16,258 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML
2025-10-30 14:19:16,258 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML
2025-10-30 14:19:16,259 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML
2025-10-30 14:19:16,259 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML
2025-10-30 14:19:16,259 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML
2025-10-30 14:19:16,260 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML
2025-10-30 14:19:16,260 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML
2025-10-30 14:19:16,260 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML
2025-10-30 14:19:16,261 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML
2025-10-30 14:19:16,261 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/Newick.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo
2025-10-30 14:19:16,261 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/BaseTree.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo
2025-10-30 14:19:16,262 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo
2025-10-30 14:19:16,262 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Phylo/Applications
2025-10-30 14:19:16,263 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/Applications/_Phyml.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/Applications
2025-10-30 14:19:16,263 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/Applications/_Fasttree.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/Applications
2025-10-30 14:19:16,263 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/Applications/_Raxml.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/Applications
2025-10-30 14:19:16,264 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/Applications/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/Applications
2025-10-30 14:19:16,264 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo
2025-10-30 14:19:16,264 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo
2025-10-30 14:19:16,265 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/Consensus.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo
2025-10-30 14:19:16,265 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/CDAOIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo
2025-10-30 14:19:16,265 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo
2025-10-30 14:19:16,266 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/CDAO.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo
2025-10-30 14:19:16,266 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/_io.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo
2025-10-30 14:19:16,267 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Phylo/NexusIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo
2025-10-30 14:19:16,267 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/cpairwise2.cpython-312-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio
2025-10-30 14:19:16,268 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/phenotype
2025-10-30 14:19:16,268 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/phenotype/phen_micro.py -> build/bdist.linux-loongarch64/wheel/./Bio/phenotype
2025-10-30 14:19:16,268 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/phenotype/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/phenotype
2025-10-30 14:19:16,269 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/phenotype/pm_fitting.py -> build/bdist.linux-loongarch64/wheel/./Bio/phenotype
2025-10-30 14:19:16,269 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Alphabet
2025-10-30 14:19:16,269 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Alphabet/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Alphabet
2025-10-30 14:19:16,270 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio
2025-10-30 14:19:16,270 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Restriction
2025-10-30 14:19:16,270 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Restriction/PrintFormat.py -> build/bdist.linux-loongarch64/wheel/./Bio/Restriction
2025-10-30 14:19:16,271 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Restriction/Restriction.py -> build/bdist.linux-loongarch64/wheel/./Bio/Restriction
2025-10-30 14:19:16,271 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Restriction/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Restriction
2025-10-30 14:19:16,272 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-loongarch64/wheel/./Bio/Restriction
2025-10-30 14:19:16,273 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Entrez
2025-10-30 14:19:16,274 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Entrez/DTDs
2025-10-30 14:19:16,274 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,274 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,275 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,275 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,275 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,276 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,276 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,276 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,277 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,277 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,278 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,278 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,278 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,279 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,279 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,279 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,280 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,280 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,280 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,281 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,281 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,281 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,282 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,282 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,283 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,283 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,283 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,284 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,284 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,284 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,285 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,285 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,285 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,286 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,286 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,286 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,287 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,287 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,287 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,288 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,288 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,288 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,289 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,289 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,290 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,290 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,290 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,291 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,291 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,291 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,292 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,292 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,292 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,293 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,293 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,293 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,294 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,294 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,295 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,295 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
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2025-10-30 14:19:16,296 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,296 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,297 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,297 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
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2025-10-30 14:19:16,298 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,298 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/PDB_General.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,298 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,299 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,299 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
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2025-10-30 14:19:16,300 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
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2025-10-30 14:19:16,302 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
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2025-10-30 14:19:16,303 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
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2025-10-30 14:19:16,307 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,308 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
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2025-10-30 14:19:16,318 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
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2025-10-30 14:19:16,325 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
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2025-10-30 14:19:16,333 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,333 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
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2025-10-30 14:19:16,334 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,334 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
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2025-10-30 14:19:16,335 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
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2025-10-30 14:19:16,336 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,337 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
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2025-10-30 14:19:16,338 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,338 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
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2025-10-30 14:19:16,339 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,340 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
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2025-10-30 14:19:16,341 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
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2025-10-30 14:19:16,348 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
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2025-10-30 14:19:16,364 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
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2025-10-30 14:19:16,375 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,375 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,375 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,376 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,376 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,376 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,377 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,377 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,377 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,378 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs
2025-10-30 14:19:16,378 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez
2025-10-30 14:19:16,378 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/Parser.py -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez
2025-10-30 14:19:16,379 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Entrez/XSDs
2025-10-30 14:19:16,379 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/XSDs
2025-10-30 14:19:16,380 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/XSDs
2025-10-30 14:19:16,380 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/XSDs
2025-10-30 14:19:16,381 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SVDSuperimposer
2025-10-30 14:19:16,381 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SVDSuperimposer
2025-10-30 14:19:16,381 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/LogisticRegression.py -> build/bdist.linux-loongarch64/wheel/./Bio
2025-10-30 14:19:16,382 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Cluster
2025-10-30 14:19:16,382 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Cluster/cluster.c -> build/bdist.linux-loongarch64/wheel/./Bio/Cluster
2025-10-30 14:19:16,383 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Cluster/clustermodule.c -> build/bdist.linux-loongarch64/wheel/./Bio/Cluster
2025-10-30 14:19:16,383 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Cluster/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Cluster
2025-10-30 14:19:16,383 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Cluster/cluster.h -> build/bdist.linux-loongarch64/wheel/./Bio/Cluster
2025-10-30 14:19:16,384 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Cluster/_cluster.cpython-312-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/Cluster
2025-10-30 14:19:16,384 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Nexus
2025-10-30 14:19:16,385 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Nexus/cnexus.c -> build/bdist.linux-loongarch64/wheel/./Bio/Nexus
2025-10-30 14:19:16,385 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Nexus/Trees.py -> build/bdist.linux-loongarch64/wheel/./Bio/Nexus
2025-10-30 14:19:16,385 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Nexus/Nodes.py -> build/bdist.linux-loongarch64/wheel/./Bio/Nexus
2025-10-30 14:19:16,386 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Nexus/cnexus.cpython-312-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/Nexus
2025-10-30 14:19:16,386 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Nexus/StandardData.py -> build/bdist.linux-loongarch64/wheel/./Bio/Nexus
2025-10-30 14:19:16,386 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Nexus/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Nexus
2025-10-30 14:19:16,387 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Nexus/Nexus.py -> build/bdist.linux-loongarch64/wheel/./Bio/Nexus
2025-10-30 14:19:16,387 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Seq.py -> build/bdist.linux-loongarch64/wheel/./Bio
2025-10-30 14:19:16,388 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Data
2025-10-30 14:19:16,388 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Data/IUPACData.py -> build/bdist.linux-loongarch64/wheel/./Bio/Data
2025-10-30 14:19:16,389 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Data/PDBData.py -> build/bdist.linux-loongarch64/wheel/./Bio/Data
2025-10-30 14:19:16,389 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Data/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Data
2025-10-30 14:19:16,389 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Data/CodonTable.py -> build/bdist.linux-loongarch64/wheel/./Bio/Data
2025-10-30 14:19:16,390 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/bgzf.py -> build/bdist.linux-loongarch64/wheel/./Bio
2025-10-30 14:19:16,390 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/NaiveBayes.py -> build/bdist.linux-loongarch64/wheel/./Bio
2025-10-30 14:19:16,390 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/kNN.py -> build/bdist.linux-loongarch64/wheel/./Bio
2025-10-30 14:19:16,391 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/KEGG
2025-10-30 14:19:16,391 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/KEGG/Compound
2025-10-30 14:19:16,392 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG/Compound
2025-10-30 14:19:16,392 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/KEGG/Gene
2025-10-30 14:19:16,392 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG/Gene
2025-10-30 14:19:16,393 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/KEGG/Map
2025-10-30 14:19:16,393 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/KEGG/Map/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG/Map
2025-10-30 14:19:16,394 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/KEGG/Enzyme
2025-10-30 14:19:16,394 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG/Enzyme
2025-10-30 14:19:16,394 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/KEGG/REST.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG
2025-10-30 14:19:16,395 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/KEGG/KGML
2025-10-30 14:19:16,395 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG/KGML
2025-10-30 14:19:16,395 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG/KGML
2025-10-30 14:19:16,396 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG/KGML
2025-10-30 14:19:16,396 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/KEGG/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG
2025-10-30 14:19:16,396 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Graphics
2025-10-30 14:19:16,397 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/Comparative.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics
2025-10-30 14:19:16,397 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Graphics/GenomeDiagram
2025-10-30 14:19:16,398 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram
2025-10-30 14:19:16,398 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram
2025-10-30 14:19:16,398 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram
2025-10-30 14:19:16,399 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram
2025-10-30 14:19:16,399 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram
2025-10-30 14:19:16,399 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram
2025-10-30 14:19:16,400 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram
2025-10-30 14:19:16,400 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram
2025-10-30 14:19:16,401 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram
2025-10-30 14:19:16,401 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram
2025-10-30 14:19:16,401 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram
2025-10-30 14:19:16,402 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram
2025-10-30 14:19:16,402 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/KGML_vis.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics
2025-10-30 14:19:16,402 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics
2025-10-30 14:19:16,403 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics
2025-10-30 14:19:16,403 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics
2025-10-30 14:19:16,403 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/Distribution.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics
2025-10-30 14:19:16,404 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Graphics/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics
2025-10-30 14:19:16,404 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Affy
2025-10-30 14:19:16,404 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Affy/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Affy
2025-10-30 14:19:16,405 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/Affy/CelFile.py -> build/bdist.linux-loongarch64/wheel/./Bio/Affy
2025-10-30 14:19:16,405 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/HMM
2025-10-30 14:19:16,406 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/HMM/DynamicProgramming.py -> build/bdist.linux-loongarch64/wheel/./Bio/HMM
2025-10-30 14:19:16,406 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/HMM/Trainer.py -> build/bdist.linux-loongarch64/wheel/./Bio/HMM
2025-10-30 14:19:16,406 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/HMM/MarkovModel.py -> build/bdist.linux-loongarch64/wheel/./Bio/HMM
2025-10-30 14:19:16,407 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/HMM/Utilities.py -> build/bdist.linux-loongarch64/wheel/./Bio/HMM
2025-10-30 14:19:16,407 root INFO copying build/lib.linux-loongarch64-cpython-312/Bio/HMM/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/HMM
2025-10-30 14:19:16,408 root INFO creating build/bdist.linux-loongarch64/wheel/BioSQL
2025-10-30 14:19:16,408 root INFO copying build/lib.linux-loongarch64-cpython-312/BioSQL/py.typed -> build/bdist.linux-loongarch64/wheel/./BioSQL
2025-10-30 14:19:16,408 root INFO copying build/lib.linux-loongarch64-cpython-312/BioSQL/Loader.py -> build/bdist.linux-loongarch64/wheel/./BioSQL
2025-10-30 14:19:16,409 root INFO copying build/lib.linux-loongarch64-cpython-312/BioSQL/BioSeqDatabase.py -> build/bdist.linux-loongarch64/wheel/./BioSQL
2025-10-30 14:19:16,409 root INFO copying build/lib.linux-loongarch64-cpython-312/BioSQL/__init__.py -> build/bdist.linux-loongarch64/wheel/./BioSQL
2025-10-30 14:19:16,409 root INFO copying build/lib.linux-loongarch64-cpython-312/BioSQL/BioSeq.py -> build/bdist.linux-loongarch64/wheel/./BioSQL
2025-10-30 14:19:16,410 root INFO copying build/lib.linux-loongarch64-cpython-312/BioSQL/DBUtils.py -> build/bdist.linux-loongarch64/wheel/./BioSQL
2025-10-30 14:19:16,410 root INFO running install_egg_info
2025-10-30 14:19:16,417 root INFO Copying biopython.egg-info to build/bdist.linux-loongarch64/wheel/./biopython-1.85-py3.12.egg-info
2025-10-30 14:19:16,419 root INFO running install_scripts
2025-10-30 14:19:16,431 root INFO creating build/bdist.linux-loongarch64/wheel/biopython-1.85.dist-info/WHEEL
2025-10-30 14:19:16,432 wheel INFO creating '/home/buildozer/aports/community/py3-biopython/src/biopython-1.85/.dist/.tmp-xffo1m2f/biopython-1.85-cp312-cp312-linux_loongarch64.whl' and adding 'build/bdist.linux-loongarch64/wheel' to it
2025-10-30 14:19:16,433 wheel INFO adding 'Bio/File.py'
2025-10-30 14:19:16,433 wheel INFO adding 'Bio/LogisticRegression.py'
2025-10-30 14:19:16,434 wheel INFO adding 'Bio/MarkovModel.py'
2025-10-30 14:19:16,434 wheel INFO adding 'Bio/MaxEntropy.py'
2025-10-30 14:19:16,435 wheel INFO adding 'Bio/NaiveBayes.py'
2025-10-30 14:19:16,436 wheel INFO adding 'Bio/Seq.py'
2025-10-30 14:19:16,437 wheel INFO adding 'Bio/SeqFeature.py'
2025-10-30 14:19:16,438 wheel INFO adding 'Bio/SeqRecord.py'
2025-10-30 14:19:16,439 wheel INFO adding 'Bio/__init__.py'
2025-10-30 14:19:16,439 wheel INFO adding 'Bio/_utils.py'
2025-10-30 14:19:16,439 wheel INFO adding 'Bio/bgzf.py'
2025-10-30 14:19:16,440 wheel INFO adding 'Bio/cpairwise2.cpython-312-loongarch64-linux-musl.so'
2025-10-30 14:19:16,441 wheel INFO adding 'Bio/cpairwise2module.c'
2025-10-30 14:19:16,442 wheel INFO adding 'Bio/kNN.py'
2025-10-30 14:19:16,442 wheel INFO adding 'Bio/pairwise2.py'
2025-10-30 14:19:16,443 wheel INFO adding 'Bio/py.typed'
2025-10-30 14:19:16,444 wheel INFO adding 'Bio/Affy/CelFile.py'
2025-10-30 14:19:16,444 wheel INFO adding 'Bio/Affy/__init__.py'
2025-10-30 14:19:16,445 wheel INFO adding 'Bio/Align/AlignInfo.py'
2025-10-30 14:19:16,446 wheel INFO adding 'Bio/Align/__init__.py'
2025-10-30 14:19:16,447 wheel INFO adding 'Bio/Align/_aligncore.c'
2025-10-30 14:19:16,448 wheel INFO adding 'Bio/Align/_aligncore.cpython-312-loongarch64-linux-musl.so'
2025-10-30 14:19:16,449 wheel INFO adding 'Bio/Align/_codonaligner.c'
2025-10-30 14:19:16,449 wheel INFO adding 'Bio/Align/_codonaligner.cpython-312-loongarch64-linux-musl.so'
2025-10-30 14:19:16,451 wheel INFO adding 'Bio/Align/_pairwisealigner.c'
2025-10-30 14:19:16,453 wheel INFO adding 'Bio/Align/_pairwisealigner.cpython-312-loongarch64-linux-musl.so'
2025-10-30 14:19:16,455 wheel INFO adding 'Bio/Align/a2m.py'
2025-10-30 14:19:16,455 wheel INFO adding 'Bio/Align/analysis.py'
2025-10-30 14:19:16,456 wheel INFO adding 'Bio/Align/bed.py'
2025-10-30 14:19:16,457 wheel INFO adding 'Bio/Align/bigbed.py'
2025-10-30 14:19:16,458 wheel INFO adding 'Bio/Align/bigmaf.py'
2025-10-30 14:19:16,458 wheel INFO adding 'Bio/Align/bigpsl.py'
2025-10-30 14:19:16,459 wheel INFO adding 'Bio/Align/chain.py'
2025-10-30 14:19:16,459 wheel INFO adding 'Bio/Align/clustal.py'
2025-10-30 14:19:16,459 wheel INFO adding 'Bio/Align/emboss.py'
2025-10-30 14:19:16,460 wheel INFO adding 'Bio/Align/exonerate.py'
2025-10-30 14:19:16,461 wheel INFO adding 'Bio/Align/fasta.py'
2025-10-30 14:19:16,461 wheel INFO adding 'Bio/Align/hhr.py'
2025-10-30 14:19:16,461 wheel INFO adding 'Bio/Align/interfaces.py'
2025-10-30 14:19:16,462 wheel INFO adding 'Bio/Align/maf.py'
2025-10-30 14:19:16,462 wheel INFO adding 'Bio/Align/mauve.py'
2025-10-30 14:19:16,463 wheel INFO adding 'Bio/Align/msf.py'
2025-10-30 14:19:16,463 wheel INFO adding 'Bio/Align/nexus.py'
2025-10-30 14:19:16,463 wheel INFO adding 'Bio/Align/phylip.py'
2025-10-30 14:19:16,464 wheel INFO adding 'Bio/Align/psl.py'
2025-10-30 14:19:16,465 wheel INFO adding 'Bio/Align/sam.py'
2025-10-30 14:19:16,465 wheel INFO adding 'Bio/Align/stockholm.py'
2025-10-30 14:19:16,466 wheel INFO adding 'Bio/Align/tabular.py'
2025-10-30 14:19:16,466 wheel INFO adding 'Bio/Align/Applications/_ClustalOmega.py'
2025-10-30 14:19:16,467 wheel INFO adding 'Bio/Align/Applications/_Clustalw.py'
2025-10-30 14:19:16,467 wheel INFO adding 'Bio/Align/Applications/_Dialign.py'
2025-10-30 14:19:16,468 wheel INFO adding 'Bio/Align/Applications/_MSAProbs.py'
2025-10-30 14:19:16,468 wheel INFO adding 'Bio/Align/Applications/_Mafft.py'
2025-10-30 14:19:16,469 wheel INFO adding 'Bio/Align/Applications/_Muscle.py'
2025-10-30 14:19:16,469 wheel INFO adding 'Bio/Align/Applications/_Prank.py'
2025-10-30 14:19:16,470 wheel INFO adding 'Bio/Align/Applications/_Probcons.py'
2025-10-30 14:19:16,470 wheel INFO adding 'Bio/Align/Applications/_TCoffee.py'
2025-10-30 14:19:16,470 wheel INFO adding 'Bio/Align/Applications/__init__.py'
2025-10-30 14:19:16,471 wheel INFO adding 'Bio/Align/substitution_matrices/__init__.py'
2025-10-30 14:19:16,471 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER22'
2025-10-30 14:19:16,472 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER6'
2025-10-30 14:19:16,472 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER74'
2025-10-30 14:19:16,472 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLASTN'
2025-10-30 14:19:16,473 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLASTP'
2025-10-30 14:19:16,473 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM45'
2025-10-30 14:19:16,473 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM50'
2025-10-30 14:19:16,474 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM62'
2025-10-30 14:19:16,474 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM80'
2025-10-30 14:19:16,474 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM90'
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2025-10-30 14:19:16,708 wheel INFO adding 'Bio/Phylo/PAML/_parse_baseml.py'
2025-10-30 14:19:16,708 wheel INFO adding 'Bio/Phylo/PAML/_parse_codeml.py'
2025-10-30 14:19:16,709 wheel INFO adding 'Bio/Phylo/PAML/_parse_yn00.py'
2025-10-30 14:19:16,709 wheel INFO adding 'Bio/Phylo/PAML/baseml.py'
2025-10-30 14:19:16,709 wheel INFO adding 'Bio/Phylo/PAML/chi2.py'
2025-10-30 14:19:16,710 wheel INFO adding 'Bio/Phylo/PAML/codeml.py'
2025-10-30 14:19:16,710 wheel INFO adding 'Bio/Phylo/PAML/yn00.py'
2025-10-30 14:19:16,711 wheel INFO adding 'Bio/PopGen/__init__.py'
2025-10-30 14:19:16,711 wheel INFO adding 'Bio/PopGen/GenePop/Controller.py'
2025-10-30 14:19:16,712 wheel INFO adding 'Bio/PopGen/GenePop/EasyController.py'
2025-10-30 14:19:16,712 wheel INFO adding 'Bio/PopGen/GenePop/FileParser.py'
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2025-10-30 14:19:16,713 wheel INFO adding 'Bio/PopGen/GenePop/__init__.py'
2025-10-30 14:19:16,714 wheel INFO adding 'Bio/Restriction/PrintFormat.py'
2025-10-30 14:19:16,714 wheel INFO adding 'Bio/Restriction/Restriction.py'
2025-10-30 14:19:16,716 wheel INFO adding 'Bio/Restriction/Restriction_Dictionary.py'
2025-10-30 14:19:16,720 wheel INFO adding 'Bio/Restriction/__init__.py'
2025-10-30 14:19:16,721 wheel INFO adding 'Bio/SCOP/Cla.py'
2025-10-30 14:19:16,721 wheel INFO adding 'Bio/SCOP/Des.py'
2025-10-30 14:19:16,721 wheel INFO adding 'Bio/SCOP/Dom.py'
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2025-10-30 14:19:16,722 wheel INFO adding 'Bio/SCOP/Raf.py'
2025-10-30 14:19:16,722 wheel INFO adding 'Bio/SCOP/Residues.py'
2025-10-30 14:19:16,723 wheel INFO adding 'Bio/SCOP/__init__.py'
2025-10-30 14:19:16,723 wheel INFO adding 'Bio/SVDSuperimposer/__init__.py'
2025-10-30 14:19:16,724 wheel INFO adding 'Bio/SearchIO/BlatIO.py'
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2025-10-30 14:19:16,725 wheel INFO adding 'Bio/SearchIO/__init__.py'
2025-10-30 14:19:16,726 wheel INFO adding 'Bio/SearchIO/_index.py'
2025-10-30 14:19:16,726 wheel INFO adding 'Bio/SearchIO/_utils.py'
2025-10-30 14:19:16,727 wheel INFO adding 'Bio/SearchIO/BlastIO/__init__.py'
2025-10-30 14:19:16,727 wheel INFO adding 'Bio/SearchIO/BlastIO/blast_tab.py'
2025-10-30 14:19:16,728 wheel INFO adding 'Bio/SearchIO/BlastIO/blast_xml.py'
2025-10-30 14:19:16,728 wheel INFO adding 'Bio/SearchIO/ExonerateIO/__init__.py'
2025-10-30 14:19:16,729 wheel INFO adding 'Bio/SearchIO/ExonerateIO/_base.py'
2025-10-30 14:19:16,729 wheel INFO adding 'Bio/SearchIO/ExonerateIO/exonerate_cigar.py'
2025-10-30 14:19:16,730 wheel INFO adding 'Bio/SearchIO/ExonerateIO/exonerate_text.py'
2025-10-30 14:19:16,730 wheel INFO adding 'Bio/SearchIO/ExonerateIO/exonerate_vulgar.py'
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2025-10-30 14:19:16,732 wheel INFO adding 'Bio/SearchIO/HmmerIO/_base.py'
2025-10-30 14:19:16,732 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer2_text.py'
2025-10-30 14:19:16,733 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer3_domtab.py'
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2025-10-30 14:19:16,735 wheel INFO adding 'Bio/SearchIO/InterproscanIO/interproscan_xml.py'
2025-10-30 14:19:16,735 wheel INFO adding 'Bio/SearchIO/_model/__init__.py'
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2025-10-30 14:19:16,736 wheel INFO adding 'Bio/SearchIO/_model/hit.py'
2025-10-30 14:19:16,737 wheel INFO adding 'Bio/SearchIO/_model/hsp.py'
2025-10-30 14:19:16,737 wheel INFO adding 'Bio/SearchIO/_model/query.py'
2025-10-30 14:19:16,738 wheel INFO adding 'Bio/SeqIO/AbiIO.py'
2025-10-30 14:19:16,739 wheel INFO adding 'Bio/SeqIO/AceIO.py'
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2025-10-30 14:19:16,740 wheel INFO adding 'Bio/SeqIO/GckIO.py'
2025-10-30 14:19:16,740 wheel INFO adding 'Bio/SeqIO/GfaIO.py'
2025-10-30 14:19:16,740 wheel INFO adding 'Bio/SeqIO/IgIO.py'
2025-10-30 14:19:16,741 wheel INFO adding 'Bio/SeqIO/InsdcIO.py'
2025-10-30 14:19:16,742 wheel INFO adding 'Bio/SeqIO/Interfaces.py'
2025-10-30 14:19:16,742 wheel INFO adding 'Bio/SeqIO/NibIO.py'
2025-10-30 14:19:16,742 wheel INFO adding 'Bio/SeqIO/PdbIO.py'
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2025-10-30 14:19:16,743 wheel INFO adding 'Bio/SeqIO/PirIO.py'
2025-10-30 14:19:16,744 wheel INFO adding 'Bio/SeqIO/QualityIO.py'
2025-10-30 14:19:16,745 wheel INFO adding 'Bio/SeqIO/SeqXmlIO.py'
2025-10-30 14:19:16,746 wheel INFO adding 'Bio/SeqIO/SffIO.py'
2025-10-30 14:19:16,746 wheel INFO adding 'Bio/SeqIO/SnapGeneIO.py'
2025-10-30 14:19:16,747 wheel INFO adding 'Bio/SeqIO/SwissIO.py'
2025-10-30 14:19:16,747 wheel INFO adding 'Bio/SeqIO/TabIO.py'
2025-10-30 14:19:16,748 wheel INFO adding 'Bio/SeqIO/TwoBitIO.py'
2025-10-30 14:19:16,748 wheel INFO adding 'Bio/SeqIO/UniprotIO.py'
2025-10-30 14:19:16,749 wheel INFO adding 'Bio/SeqIO/XdnaIO.py'
2025-10-30 14:19:16,749 wheel INFO adding 'Bio/SeqIO/__init__.py'
2025-10-30 14:19:16,750 wheel INFO adding 'Bio/SeqIO/_index.py'
2025-10-30 14:19:16,750 wheel INFO adding 'Bio/SeqIO/_twoBitIO.c'
2025-10-30 14:19:16,751 wheel INFO adding 'Bio/SeqIO/_twoBitIO.cpython-312-loongarch64-linux-musl.so'
2025-10-30 14:19:16,752 wheel INFO adding 'Bio/SeqUtils/CheckSum.py'
2025-10-30 14:19:16,752 wheel INFO adding 'Bio/SeqUtils/IsoelectricPoint.py'
2025-10-30 14:19:16,753 wheel INFO adding 'Bio/SeqUtils/MeltingTemp.py'
2025-10-30 14:19:16,754 wheel INFO adding 'Bio/SeqUtils/ProtParam.py'
2025-10-30 14:19:16,754 wheel INFO adding 'Bio/SeqUtils/ProtParamData.py'
2025-10-30 14:19:16,755 wheel INFO adding 'Bio/SeqUtils/__init__.py'
2025-10-30 14:19:16,755 wheel INFO adding 'Bio/SeqUtils/lcc.py'
2025-10-30 14:19:16,756 wheel INFO adding 'Bio/Sequencing/Ace.py'
2025-10-30 14:19:16,756 wheel INFO adding 'Bio/Sequencing/Phd.py'
2025-10-30 14:19:16,756 wheel INFO adding 'Bio/Sequencing/__init__.py'
2025-10-30 14:19:16,757 wheel INFO adding 'Bio/Sequencing/Applications/_Novoalign.py'
2025-10-30 14:19:16,757 wheel INFO adding 'Bio/Sequencing/Applications/__init__.py'
2025-10-30 14:19:16,758 wheel INFO adding 'Bio/Sequencing/Applications/_bwa.py'
2025-10-30 14:19:16,758 wheel INFO adding 'Bio/Sequencing/Applications/_samtools.py'
2025-10-30 14:19:16,759 wheel INFO adding 'Bio/SwissProt/KeyWList.py'
2025-10-30 14:19:16,759 wheel INFO adding 'Bio/SwissProt/__init__.py'
2025-10-30 14:19:16,760 wheel INFO adding 'Bio/TogoWS/__init__.py'
2025-10-30 14:19:16,761 wheel INFO adding 'Bio/UniGene/__init__.py'
2025-10-30 14:19:16,761 wheel INFO adding 'Bio/UniProt/GOA.py'
2025-10-30 14:19:16,762 wheel INFO adding 'Bio/UniProt/__init__.py'
2025-10-30 14:19:16,762 wheel INFO adding 'Bio/codonalign/__init__.py'
2025-10-30 14:19:16,763 wheel INFO adding 'Bio/codonalign/codonalignment.py'
2025-10-30 14:19:16,763 wheel INFO adding 'Bio/codonalign/codonseq.py'
2025-10-30 14:19:16,764 wheel INFO adding 'Bio/motifs/__init__.py'
2025-10-30 14:19:16,765 wheel INFO adding 'Bio/motifs/_pwm.c'
2025-10-30 14:19:16,765 wheel INFO adding 'Bio/motifs/_pwm.cpython-312-loongarch64-linux-musl.so'
2025-10-30 14:19:16,766 wheel INFO adding 'Bio/motifs/alignace.py'
2025-10-30 14:19:16,766 wheel INFO adding 'Bio/motifs/clusterbuster.py'
2025-10-30 14:19:16,767 wheel INFO adding 'Bio/motifs/mast.py'
2025-10-30 14:19:16,767 wheel INFO adding 'Bio/motifs/matrix.py'
2025-10-30 14:19:16,768 wheel INFO adding 'Bio/motifs/meme.py'
2025-10-30 14:19:16,768 wheel INFO adding 'Bio/motifs/minimal.py'
2025-10-30 14:19:16,768 wheel INFO adding 'Bio/motifs/pfm.py'
2025-10-30 14:19:16,769 wheel INFO adding 'Bio/motifs/thresholds.py'
2025-10-30 14:19:16,769 wheel INFO adding 'Bio/motifs/transfac.py'
2025-10-30 14:19:16,770 wheel INFO adding 'Bio/motifs/xms.py'
2025-10-30 14:19:16,770 wheel INFO adding 'Bio/motifs/applications/__init__.py'
2025-10-30 14:19:16,770 wheel INFO adding 'Bio/motifs/applications/_xxmotif.py'
2025-10-30 14:19:16,771 wheel INFO adding 'Bio/motifs/jaspar/__init__.py'
2025-10-30 14:19:16,771 wheel INFO adding 'Bio/motifs/jaspar/db.py'
2025-10-30 14:19:16,772 wheel INFO adding 'Bio/phenotype/__init__.py'
2025-10-30 14:19:16,773 wheel INFO adding 'Bio/phenotype/phen_micro.py'
2025-10-30 14:19:16,773 wheel INFO adding 'Bio/phenotype/pm_fitting.py'
2025-10-30 14:19:16,774 wheel INFO adding 'BioSQL/BioSeq.py'
2025-10-30 14:19:16,774 wheel INFO adding 'BioSQL/BioSeqDatabase.py'
2025-10-30 14:19:16,775 wheel INFO adding 'BioSQL/DBUtils.py'
2025-10-30 14:19:16,775 wheel INFO adding 'BioSQL/Loader.py'
2025-10-30 14:19:16,776 wheel INFO adding 'BioSQL/__init__.py'
2025-10-30 14:19:16,776 wheel INFO adding 'BioSQL/py.typed'
2025-10-30 14:19:16,777 wheel INFO adding 'biopython-1.85.dist-info/licenses/LICENSE'
2025-10-30 14:19:16,777 wheel INFO adding 'biopython-1.85.dist-info/licenses/LICENSE.rst'
2025-10-30 14:19:16,778 wheel INFO adding 'biopython-1.85.dist-info/METADATA'
2025-10-30 14:19:16,778 wheel INFO adding 'biopython-1.85.dist-info/WHEEL'
2025-10-30 14:19:16,778 wheel INFO adding 'biopython-1.85.dist-info/top_level.txt'
2025-10-30 14:19:16,782 wheel INFO adding 'biopython-1.85.dist-info/RECORD'
2025-10-30 14:19:16,786 root INFO removing build/bdist.linux-loongarch64/wheel
2025-10-30 14:19:16,820 gpep517 INFO The backend produced .dist/biopython-1.85-cp312-cp312-linux_loongarch64.whl
biopython-1.85-cp312-cp312-linux_loongarch64.whl
>>> py3-biopython: Entering fakeroot...
>>> py3-biopython-pyc*: Running split function pyc...
'usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__'
'usr/lib/python3.12/site-packages/Bio/NMR/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/NMR/__pycache__'
'usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__'
'usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Blast/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Blast/__pycache__'
'usr/lib/python3.12/site-packages/Bio/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__'
'usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Geo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Geo/__pycache__'
'usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Sequencing/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Sequencing/Applications/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Application/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Application/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Compass/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Compass/__pycache__'
'usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__'
'usr/lib/python3.12/site-packages/Bio/motifs/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/__pycache__'
'usr/lib/python3.12/site-packages/Bio/motifs/applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/applications/__pycache__'
'usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Medline/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Medline/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Align/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Align/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/Applications/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Phylo/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/Applications/__pycache__'
'usr/lib/python3.12/site-packages/Bio/phenotype/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/phenotype/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Data/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Data/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Affy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Affy/__pycache__'
'usr/lib/python3.12/site-packages/Bio/HMM/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/HMM/__pycache__'
'usr/lib/python3.12/site-packages/BioSQL/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/BioSQL/__pycache__'
>>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc...
>>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc
>>> py3-biopython*: Running postcheck for py3-biopython
>>> py3-biopython*: Preparing package py3-biopython...
>>> py3-biopython*: Stripping binaries
>>> py3-biopython*: Scanning shared objects
>>> py3-biopython-pyc*: Tracing dependencies...
	python3~3.12
>>> py3-biopython-pyc*: Package size: 6.4 MB
>>> py3-biopython-pyc*: Compressing data...
>>> py3-biopython-pyc*: Create checksum...
>>> py3-biopython-pyc*: Create py3-biopython-pyc-1.85-r0.apk
>>> py3-biopython*: Tracing dependencies...
	py3-numpy
	python3
	python3~3.12
	so:libc.musl-loongarch64.so.1
>>> py3-biopython*: Package size: 11.7 MB
>>> py3-biopython*: Compressing data...
>>> py3-biopython*: Create checksum...
>>> py3-biopython*: Create py3-biopython-1.85-r0.apk
>>> py3-biopython: Build complete at Thu, 30 Oct 2025 14:19:21 +0000 elapsed time 0h 0m 48s
>>> py3-biopython: Cleaning up srcdir
>>> py3-biopython: Cleaning up pkgdir
>>> py3-biopython: Cleaning up tmpdir
>>> py3-biopython: Uninstalling dependencies...
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busybox-1.37.0-r24.trigger: Executing script...
OK: 543 MiB in 105 packages
>>> py3-biopython: Updating the community/loongarch64 repository index...
>>> py3-biopython: Signing the index...