>>> py3-bioframe: Building community/py3-bioframe 0.8.0-r0 (using abuild 3.16.0_rc4-r0) started Fri, 07 Nov 2025 04:35:49 +0000 >>> py3-bioframe: Validating /home/buildozer/aports/community/py3-bioframe/APKBUILD... >>> py3-bioframe: Analyzing dependencies... >>> py3-bioframe: Installing for build: build-base py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools py3-gpep517 py3-hatchling py3-wheel py3-pytest-xdist ( 1/109) Installing libbz2 (1.0.8-r6) ( 2/109) Installing libffi (3.5.2-r0) ( 3/109) Installing gdbm (1.26-r0) ( 4/109) Installing xz-libs (5.8.1-r0) ( 5/109) Installing mpdecimal (4.0.1-r0) ( 6/109) Installing libpanelw (6.5_p20251010-r0) ( 7/109) Installing sqlite-libs (3.51.0-r0) ( 8/109) Installing python3 (3.12.12-r0) ( 9/109) Installing python3-pycache-pyc0 (3.12.12-r0) ( 10/109) Installing pyc (3.12.12-r0) ( 11/109) Installing py3-contourpy-pyc (1.3.2-r0) ( 12/109) Installing py3-matplotlib-pyc (3.10.3-r2) ( 13/109) Installing 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OK: 603 MiB in 214 packages >>> py3-bioframe: Cleaning up srcdir >>> py3-bioframe: Cleaning up pkgdir >>> py3-bioframe: Cleaning up tmpdir >>> py3-bioframe: Fetching https://distfiles.alpinelinux.org/distfiles/v3.23/bioframe-0.8.0.tar.gz Connecting to distfiles.alpinelinux.org (172.105.82.32:443) wget: server returned error: HTTP/1.1 404 Not Found >>> py3-bioframe: Fetching https://github.com/open2c/bioframe/archive/v0.8.0/bioframe-0.8.0.tar.gz Connecting to github.com (20.26.156.215:443) Connecting to codeload.github.com (20.26.156.216:443) saving to '/var/cache/distfiles/v3.23/bioframe-0.8.0.tar.gz.part' bioframe-0.8.0.tar.g 170k --:--:-- ETA bioframe-0.8.0.tar.g 100% |********************************| 952k 0:00:00 ETA '/var/cache/distfiles/v3.23/bioframe-0.8.0.tar.gz.part' saved /var/cache/distfiles/v3.23/bioframe-0.8.0.tar.gz: OK >>> py3-bioframe: Fetching https://distfiles.alpinelinux.org/distfiles/v3.23/bioframe-0.8.0.tar.gz /var/cache/distfiles/v3.23/bioframe-0.8.0.tar.gz: OK >>> py3-bioframe: Unpacking /var/cache/distfiles/v3.23/bioframe-0.8.0.tar.gz... 2025-11-07 04:36:04,931 gpep517 INFO Building wheel via backend hatchling.build 2025-11-07 04:36:05,005 gpep517 INFO The backend produced .dist/bioframe-0.8.0-py3-none-any.whl bioframe-0.8.0-py3-none-any.whl ============================= test session starts ============================== platform linux -- Python 3.12.12, pytest-8.4.2, pluggy-1.6.0 rootdir: /home/buildozer/aports/community/py3-bioframe/src/bioframe-0.8.0 configfile: pyproject.toml testpaths: tests plugins: xdist-3.8.0 created: 8/8 workers 8 workers [70 items] ........................s........s...........s........................ [100%] =========================== short test summary info ============================ SKIPPED [1] tests/test_extras.py:85: could not import 'Bio': No module named 'Bio' SKIPPED [1] tests/test_extras.py:129: could not import 'pysam': No module named 'pysam' SKIPPED [1] tests/test_extras.py:97: could not import 'pysam': No module named 'pysam' ======================== 67 passed, 3 skipped in 6.59s ========================= >>> py3-bioframe: Entering fakeroot... libfakeroot internal error: payload not recognized! >>> py3-bioframe-doc*: Running split function doc... 'usr/share/doc' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-doc/usr/share/doc' >>> py3-bioframe-doc*: Preparing subpackage py3-bioframe-doc... >>> py3-bioframe-doc*: Running postcheck for py3-bioframe-doc >>> py3-bioframe-pyc*: Running split function pyc... libfakeroot internal error: payload not recognized! 'usr/lib/python3.12/site-packages/bioframe/sandbox/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/sandbox/__pycache__' 'usr/lib/python3.12/site-packages/bioframe/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/__pycache__' 'usr/lib/python3.12/site-packages/bioframe/io/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/io/__pycache__' 'usr/lib/python3.12/site-packages/bioframe/core/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/core/__pycache__' >>> py3-bioframe-pyc*: Preparing subpackage py3-bioframe-pyc... >>> py3-bioframe-pyc*: Running postcheck for py3-bioframe-pyc >>> py3-bioframe*: Running postcheck for py3-bioframe >>> py3-bioframe*: Preparing package py3-bioframe... >>> py3-bioframe-doc*: Tracing dependencies... >>> py3-bioframe-doc*: Package size: 7.7 KB >>> py3-bioframe-doc*: Compressing data... >>> py3-bioframe-doc*: Create checksum... >>> py3-bioframe-doc*: Create py3-bioframe-doc-0.8.0-r0.apk >>> py3-bioframe-pyc*: Tracing dependencies... python3~3.12 >>> py3-bioframe-pyc*: Package size: 263.5 KB >>> py3-bioframe-pyc*: Compressing data... >>> py3-bioframe-pyc*: Create checksum... >>> py3-bioframe-pyc*: Create py3-bioframe-pyc-0.8.0-r0.apk >>> py3-bioframe*: Tracing dependencies... py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools python3~3.12 >>> py3-bioframe*: Package size: 238.5 KB >>> py3-bioframe*: Compressing data... >>> py3-bioframe*: Create checksum... >>> py3-bioframe*: Create py3-bioframe-0.8.0-r0.apk >>> py3-bioframe: Build complete at Fri, 07 Nov 2025 04:36:12 +0000 elapsed time 0h 0m 23s >>> py3-bioframe: Cleaning up srcdir >>> py3-bioframe: Cleaning up pkgdir >>> py3-bioframe: Uninstalling dependencies... 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OK: 385 MiB in 105 packages >>> py3-bioframe: Updating the community/s390x repository index... >>> py3-bioframe: Signing the index...