>>> py3-biopython: Building community/py3-biopython 1.86-r1 (using abuild 3.17.0_rc2-r0) started Wed, 06 May 2026 15:05:34 +0000
>>> py3-biopython: Validating /home/buildozer/aports/community/py3-biopython/APKBUILD...
>>> py3-biopython: Analyzing dependencies...
>>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev
( 1/29) Installing gdbm (1.26-r0)
( 2/29) Installing xz-libs (5.8.3-r0)
( 3/29) Installing mpdecimal (4.0.1-r0)
( 4/29) Installing libpanelw (6.6_p20260404-r0)
( 5/29) Installing readline (8.3.3-r1)
( 6/29) Installing sqlite-libs (3.53.0-r0)
( 7/29) Installing python3 (3.14.3-r0)
( 8/29) Installing python3-pycache-pyc0 (3.14.3-r0)
( 9/29) Installing pyc (3.14.3-r0)
(10/29) Installing py3-numpy-pyc (2.4.4-r0)
(11/29) Installing python3-pyc (3.14.3-r0)
(12/29) Installing openblas (0.3.30-r2)
(13/29) Installing py3-numpy (2.4.4-r0)
(14/29) Installing py3-numpy-tests (2.4.4-r0)
(15/29) Installing py3-installer (1.0.0-r0)
(16/29) Installing py3-installer-pyc (1.0.0-r0)
(17/29) Installing py3-gpep517 (19-r2)
(18/29) Installing py3-gpep517-pyc (19-r2)
(19/29) Installing py3-parsing (3.3.2-r1)
(20/29) Installing py3-parsing-pyc (3.3.2-r1)
(21/29) Installing py3-packaging (26.2-r0)
(22/29) Installing py3-packaging-pyc (26.2-r0)
(23/29) Installing py3-setuptools (82.0.1-r1)
(24/29) Installing py3-setuptools-pyc (82.0.1-r1)
(25/29) Installing py3-wheel (0.47.0-r0)
(26/29) Installing py3-wheel-pyc (0.47.0-r0)
(27/29) Installing py3-numpy-dev (2.4.4-r0)
(28/29) Installing python3-dev (3.14.3-r0)
(29/29) Installing .makedepends-py3-biopython (20260506.150548)
Executing busybox-1.37.0-r31.trigger
OK: 1530.8 MiB in 165 packages
>>> py3-biopython: Cleaning up srcdir
>>> py3-biopython: Cleaning up pkgdir
>>> py3-biopython: Cleaning up tmpdir
>>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/v3.24/biopython-1.86.tar.gz
Connecting to distfiles.alpinelinux.org (172.105.82.32:443)
saving to '/var/cache/distfiles/v3.24/biopython-1.86.tar.gz.part'
biopython-1.86.tar.g 100% |********************************| 18.9M  0:00:00 ETA
'/var/cache/distfiles/v3.24/biopython-1.86.tar.gz.part' saved
/var/cache/distfiles/v3.24/biopython-1.86.tar.gz: OK
>>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/v3.24/biopython-1.86.tar.gz
/var/cache/distfiles/v3.24/biopython-1.86.tar.gz: OK
>>> py3-biopython: Unpacking /var/cache/distfiles/v3.24/biopython-1.86.tar.gz...
2026-05-06 15:05:59,465 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__
/usr/lib/python3.14/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!

        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:

        License :: Freely Distributable

        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************

!!
  self._finalize_license_expression()
2026-05-06 15:05:59,571 root INFO running bdist_wheel
2026-05-06 15:05:59,634 root INFO running build
2026-05-06 15:05:59,635 root INFO running build_py
2026-05-06 15:05:59,650 root INFO creating build/lib.linux-riscv64-cpython-314/Bio
2026-05-06 15:05:59,652 root INFO copying Bio/SeqRecord.py -> build/lib.linux-riscv64-cpython-314/Bio
2026-05-06 15:05:59,654 root INFO copying Bio/Seq.py -> build/lib.linux-riscv64-cpython-314/Bio
2026-05-06 15:05:59,657 root INFO copying Bio/bgzf.py -> build/lib.linux-riscv64-cpython-314/Bio
2026-05-06 15:05:59,659 root INFO copying Bio/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio
2026-05-06 15:05:59,661 root INFO copying Bio/SeqFeature.py -> build/lib.linux-riscv64-cpython-314/Bio
2026-05-06 15:05:59,663 root INFO copying Bio/File.py -> build/lib.linux-riscv64-cpython-314/Bio
2026-05-06 15:05:59,665 root INFO copying Bio/_utils.py -> build/lib.linux-riscv64-cpython-314/Bio
2026-05-06 15:05:59,666 root INFO copying Bio/pairwise2.py -> build/lib.linux-riscv64-cpython-314/Bio
2026-05-06 15:05:59,668 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Affy
2026-05-06 15:05:59,669 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Affy
2026-05-06 15:05:59,671 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-riscv64-cpython-314/Bio/Affy
2026-05-06 15:05:59,673 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,674 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,676 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,678 root INFO copying Bio/Align/hhr.py -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,679 root INFO copying Bio/Align/chain.py -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,681 root INFO copying Bio/Align/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,683 root INFO copying Bio/Align/phylip.py -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,685 root INFO copying Bio/Align/bed.py -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,686 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,687 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,689 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,691 root INFO copying Bio/Align/emboss.py -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,692 root INFO copying Bio/Align/analysis.py -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,694 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,695 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,697 root INFO copying Bio/Align/clustal.py -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,698 root INFO copying Bio/Align/fasta.py -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,700 root INFO copying Bio/Align/maf.py -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,701 root INFO copying Bio/Align/nexus.py -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,703 root INFO copying Bio/Align/mauve.py -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,704 root INFO copying Bio/Align/sam.py -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,706 root INFO copying Bio/Align/psl.py -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,707 root INFO copying Bio/Align/a2m.py -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,709 root INFO copying Bio/Align/tabular.py -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,710 root INFO copying Bio/Align/msf.py -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:05:59,712 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices
2026-05-06 15:05:59,713 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices
2026-05-06 15:05:59,715 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/AlignIO
2026-05-06 15:05:59,716 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO
2026-05-06 15:05:59,718 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO
2026-05-06 15:05:59,719 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO
2026-05-06 15:05:59,721 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO
2026-05-06 15:05:59,722 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO
2026-05-06 15:05:59,724 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO
2026-05-06 15:05:59,725 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO
2026-05-06 15:05:59,727 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO
2026-05-06 15:05:59,728 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO
2026-05-06 15:05:59,730 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO
2026-05-06 15:05:59,731 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-riscv64-cpython-314/Bio/AlignIO
2026-05-06 15:05:59,733 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Alphabet
2026-05-06 15:05:59,734 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Alphabet
2026-05-06 15:05:59,736 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Blast
2026-05-06 15:05:59,737 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-riscv64-cpython-314/Bio/Blast
2026-05-06 15:05:59,738 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Blast
2026-05-06 15:05:59,740 root INFO copying Bio/Blast/_parser.py -> build/lib.linux-riscv64-cpython-314/Bio/Blast
2026-05-06 15:05:59,742 root INFO copying Bio/Blast/_writers.py -> build/lib.linux-riscv64-cpython-314/Bio/Blast
2026-05-06 15:05:59,743 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-riscv64-cpython-314/Bio/Blast
2026-05-06 15:05:59,746 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/CAPS
2026-05-06 15:05:59,746 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/CAPS
2026-05-06 15:05:59,748 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Cluster
2026-05-06 15:05:59,749 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Cluster
2026-05-06 15:05:59,751 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/codonalign
2026-05-06 15:05:59,752 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-riscv64-cpython-314/Bio/codonalign
2026-05-06 15:05:59,753 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/codonalign
2026-05-06 15:05:59,755 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-riscv64-cpython-314/Bio/codonalign
2026-05-06 15:05:59,757 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Compass
2026-05-06 15:05:59,758 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Compass
2026-05-06 15:05:59,760 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Data
2026-05-06 15:05:59,761 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-riscv64-cpython-314/Bio/Data
2026-05-06 15:05:59,763 root INFO copying Bio/Data/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Data
2026-05-06 15:05:59,764 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-riscv64-cpython-314/Bio/Data
2026-05-06 15:05:59,765 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-riscv64-cpython-314/Bio/Data
2026-05-06 15:05:59,767 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Emboss
2026-05-06 15:05:59,768 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-riscv64-cpython-314/Bio/Emboss
2026-05-06 15:05:59,769 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Emboss
2026-05-06 15:05:59,771 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-riscv64-cpython-314/Bio/Emboss
2026-05-06 15:05:59,773 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Entrez
2026-05-06 15:05:59,773 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Entrez
2026-05-06 15:05:59,775 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-riscv64-cpython-314/Bio/Entrez
2026-05-06 15:05:59,780 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/ExPASy
2026-05-06 15:05:59,780 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-riscv64-cpython-314/Bio/ExPASy
2026-05-06 15:05:59,782 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/ExPASy
2026-05-06 15:05:59,783 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-riscv64-cpython-314/Bio/ExPASy
2026-05-06 15:05:59,785 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-riscv64-cpython-314/Bio/ExPASy
2026-05-06 15:05:59,786 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-riscv64-cpython-314/Bio/ExPASy
2026-05-06 15:05:59,788 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-riscv64-cpython-314/Bio/ExPASy
2026-05-06 15:05:59,789 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/GenBank
2026-05-06 15:05:59,790 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-riscv64-cpython-314/Bio/GenBank
2026-05-06 15:05:59,792 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-riscv64-cpython-314/Bio/GenBank
2026-05-06 15:05:59,794 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/GenBank
2026-05-06 15:05:59,796 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-riscv64-cpython-314/Bio/GenBank
2026-05-06 15:05:59,797 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Geo
2026-05-06 15:05:59,798 root INFO copying Bio/Geo/Record.py -> build/lib.linux-riscv64-cpython-314/Bio/Geo
2026-05-06 15:05:59,800 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Geo
2026-05-06 15:05:59,801 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Graphics
2026-05-06 15:05:59,802 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics
2026-05-06 15:05:59,804 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics
2026-05-06 15:05:59,805 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics
2026-05-06 15:05:59,806 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics
2026-05-06 15:05:59,808 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics
2026-05-06 15:05:59,810 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics
2026-05-06 15:05:59,811 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics
2026-05-06 15:05:59,813 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-06 15:05:59,814 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-06 15:05:59,815 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-06 15:05:59,817 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-06 15:05:59,818 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-06 15:05:59,820 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-06 15:05:59,821 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-06 15:05:59,823 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-06 15:05:59,825 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-06 15:05:59,827 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-06 15:05:59,828 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-06 15:05:59,830 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-06 15:05:59,831 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram
2026-05-06 15:05:59,833 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/HMM
2026-05-06 15:05:59,834 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/HMM
2026-05-06 15:05:59,835 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/KEGG
2026-05-06 15:05:59,836 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG
2026-05-06 15:05:59,838 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG
2026-05-06 15:05:59,839 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/KEGG/Compound
2026-05-06 15:05:59,840 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG/Compound
2026-05-06 15:05:59,842 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/KEGG/Enzyme
2026-05-06 15:05:59,843 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG/Enzyme
2026-05-06 15:05:59,845 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/KEGG/Gene
2026-05-06 15:05:59,845 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG/Gene
2026-05-06 15:05:59,847 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/KEGG/Map
2026-05-06 15:05:59,848 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG/Map
2026-05-06 15:05:59,850 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/PDB/mmtf
2026-05-06 15:05:59,851 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB/mmtf
2026-05-06 15:05:59,852 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB/mmtf
2026-05-06 15:05:59,854 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB/mmtf
2026-05-06 15:05:59,855 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/KEGG/KGML
2026-05-06 15:05:59,856 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG/KGML
2026-05-06 15:05:59,858 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG/KGML
2026-05-06 15:05:59,859 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-riscv64-cpython-314/Bio/KEGG/KGML
2026-05-06 15:05:59,861 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Medline
2026-05-06 15:05:59,862 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Medline
2026-05-06 15:05:59,864 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/motifs
2026-05-06 15:05:59,865 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs
2026-05-06 15:05:59,866 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs
2026-05-06 15:05:59,868 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs
2026-05-06 15:05:59,869 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs
2026-05-06 15:05:59,871 root INFO copying Bio/motifs/meme.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs
2026-05-06 15:05:59,872 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs
2026-05-06 15:05:59,873 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs
2026-05-06 15:05:59,875 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs
2026-05-06 15:05:59,876 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs
2026-05-06 15:05:59,878 root INFO copying Bio/motifs/mast.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs
2026-05-06 15:05:59,879 root INFO copying Bio/motifs/xms.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs
2026-05-06 15:05:59,881 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/motifs/jaspar
2026-05-06 15:05:59,882 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs/jaspar
2026-05-06 15:05:59,884 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/motifs/jaspar
2026-05-06 15:05:59,886 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Nexus
2026-05-06 15:05:59,886 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-riscv64-cpython-314/Bio/Nexus
2026-05-06 15:05:59,888 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-riscv64-cpython-314/Bio/Nexus
2026-05-06 15:05:59,890 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Nexus
2026-05-06 15:05:59,891 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-riscv64-cpython-314/Bio/Nexus
2026-05-06 15:05:59,893 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-riscv64-cpython-314/Bio/Nexus
2026-05-06 15:05:59,895 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/NMR
2026-05-06 15:05:59,896 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-riscv64-cpython-314/Bio/NMR
2026-05-06 15:05:59,897 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/NMR
2026-05-06 15:05:59,898 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-riscv64-cpython-314/Bio/NMR
2026-05-06 15:05:59,900 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Pathway
2026-05-06 15:05:59,901 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Pathway
2026-05-06 15:05:59,903 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Pathway/Rep
2026-05-06 15:05:59,903 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Pathway/Rep
2026-05-06 15:05:59,905 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-riscv64-cpython-314/Bio/Pathway/Rep
2026-05-06 15:05:59,906 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-riscv64-cpython-314/Bio/Pathway/Rep
2026-05-06 15:05:59,909 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,911 root INFO copying Bio/PDB/Model.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,912 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,913 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,915 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,916 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,918 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,919 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,921 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,922 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,924 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,925 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,927 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,928 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,930 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,931 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,932 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,934 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,935 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,937 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,938 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,940 root INFO copying Bio/PDB/binary_cif.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,941 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,943 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,944 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,946 root INFO copying Bio/PDB/PDBMLParser.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,947 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,949 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,950 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,952 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,953 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,955 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,956 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,958 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,960 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,961 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,962 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,965 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,967 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,968 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,970 root INFO copying Bio/PDB/alphafold_db.py -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:05:59,971 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/phenotype
2026-05-06 15:05:59,972 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-riscv64-cpython-314/Bio/phenotype
2026-05-06 15:05:59,974 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/phenotype
2026-05-06 15:05:59,975 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-riscv64-cpython-314/Bio/phenotype
2026-05-06 15:05:59,977 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/PopGen
2026-05-06 15:05:59,978 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/PopGen
2026-05-06 15:05:59,980 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/PopGen/GenePop
2026-05-06 15:05:59,981 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/PopGen/GenePop
2026-05-06 15:05:59,982 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-riscv64-cpython-314/Bio/PopGen/GenePop
2026-05-06 15:05:59,984 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-riscv64-cpython-314/Bio/PopGen/GenePop
2026-05-06 15:05:59,985 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Restriction
2026-05-06 15:05:59,986 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Restriction
2026-05-06 15:05:59,988 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-riscv64-cpython-314/Bio/Restriction
2026-05-06 15:05:59,989 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-riscv64-cpython-314/Bio/Restriction
2026-05-06 15:05:59,994 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-riscv64-cpython-314/Bio/Restriction
2026-05-06 15:05:59,997 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SCOP
2026-05-06 15:05:59,998 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-riscv64-cpython-314/Bio/SCOP
2026-05-06 15:05:59,999 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-riscv64-cpython-314/Bio/SCOP
2026-05-06 15:06:00,001 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-riscv64-cpython-314/Bio/SCOP
2026-05-06 15:06:00,002 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SCOP
2026-05-06 15:06:00,004 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-riscv64-cpython-314/Bio/SCOP
2026-05-06 15:06:00,006 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-riscv64-cpython-314/Bio/SCOP
2026-05-06 15:06:00,007 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-riscv64-cpython-314/Bio/SCOP
2026-05-06 15:06:00,009 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SearchIO
2026-05-06 15:06:00,010 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO
2026-05-06 15:06:00,012 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO
2026-05-06 15:06:00,014 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO
2026-05-06 15:06:00,015 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO
2026-05-06 15:06:00,016 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO
2026-05-06 15:06:00,018 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model
2026-05-06 15:06:00,019 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model
2026-05-06 15:06:00,021 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model
2026-05-06 15:06:00,022 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model
2026-05-06 15:06:00,024 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model
2026-05-06 15:06:00,025 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model
2026-05-06 15:06:00,027 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SearchIO/BlastIO
2026-05-06 15:06:00,028 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/BlastIO
2026-05-06 15:06:00,030 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/BlastIO
2026-05-06 15:06:00,031 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/BlastIO
2026-05-06 15:06:00,033 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HHsuiteIO
2026-05-06 15:06:00,034 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HHsuiteIO
2026-05-06 15:06:00,036 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HHsuiteIO
2026-05-06 15:06:00,037 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO
2026-05-06 15:06:00,038 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO
2026-05-06 15:06:00,040 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO
2026-05-06 15:06:00,041 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO
2026-05-06 15:06:00,043 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO
2026-05-06 15:06:00,044 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO
2026-05-06 15:06:00,046 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO
2026-05-06 15:06:00,048 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO
2026-05-06 15:06:00,049 root INFO copying Bio/SearchIO/InfernalIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO
2026-05-06 15:06:00,050 root INFO copying Bio/SearchIO/InfernalIO/infernal_text.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO
2026-05-06 15:06:00,052 root INFO copying Bio/SearchIO/InfernalIO/infernal_tab.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO
2026-05-06 15:06:00,053 root INFO copying Bio/SearchIO/InfernalIO/_base.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO
2026-05-06 15:06:00,055 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO
2026-05-06 15:06:00,056 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO
2026-05-06 15:06:00,057 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO
2026-05-06 15:06:00,059 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO
2026-05-06 15:06:00,060 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO
2026-05-06 15:06:00,062 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO
2026-05-06 15:06:00,064 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InterproscanIO
2026-05-06 15:06:00,065 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InterproscanIO
2026-05-06 15:06:00,066 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InterproscanIO
2026-05-06 15:06:00,069 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:00,069 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:00,071 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:00,072 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:00,074 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:00,076 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:00,078 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:00,079 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:00,081 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:00,083 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:00,085 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:00,086 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:00,088 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:00,089 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:00,091 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:00,093 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:00,094 root INFO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:00,096 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:00,097 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:00,099 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:00,100 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:00,102 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:00,103 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:00,105 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:00,107 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SeqUtils
2026-05-06 15:06:00,108 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqUtils
2026-05-06 15:06:00,109 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqUtils
2026-05-06 15:06:00,111 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqUtils
2026-05-06 15:06:00,112 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqUtils
2026-05-06 15:06:00,114 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqUtils
2026-05-06 15:06:00,115 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqUtils
2026-05-06 15:06:00,117 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-riscv64-cpython-314/Bio/SeqUtils
2026-05-06 15:06:00,119 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Sequencing
2026-05-06 15:06:00,119 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Sequencing
2026-05-06 15:06:00,121 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-riscv64-cpython-314/Bio/Sequencing
2026-05-06 15:06:00,122 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-riscv64-cpython-314/Bio/Sequencing
2026-05-06 15:06:00,124 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SVDSuperimposer
2026-05-06 15:06:00,125 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SVDSuperimposer
2026-05-06 15:06:00,127 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/SwissProt
2026-05-06 15:06:00,128 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/SwissProt
2026-05-06 15:06:00,129 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-riscv64-cpython-314/Bio/SwissProt
2026-05-06 15:06:00,131 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/TogoWS
2026-05-06 15:06:00,132 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/TogoWS
2026-05-06 15:06:00,134 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Phylo
2026-05-06 15:06:00,135 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo
2026-05-06 15:06:00,136 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo
2026-05-06 15:06:00,138 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo
2026-05-06 15:06:00,140 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo
2026-05-06 15:06:00,142 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo
2026-05-06 15:06:00,143 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo
2026-05-06 15:06:00,145 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo
2026-05-06 15:06:00,146 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo
2026-05-06 15:06:00,148 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo
2026-05-06 15:06:00,149 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo
2026-05-06 15:06:00,151 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo
2026-05-06 15:06:00,152 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo
2026-05-06 15:06:00,154 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo
2026-05-06 15:06:00,155 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo
2026-05-06 15:06:00,157 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo
2026-05-06 15:06:00,159 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo
2026-05-06 15:06:00,161 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML
2026-05-06 15:06:00,161 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML
2026-05-06 15:06:00,163 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML
2026-05-06 15:06:00,164 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML
2026-05-06 15:06:00,166 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML
2026-05-06 15:06:00,167 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML
2026-05-06 15:06:00,168 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML
2026-05-06 15:06:00,170 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML
2026-05-06 15:06:00,172 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML
2026-05-06 15:06:00,173 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML
2026-05-06 15:06:00,175 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/UniGene
2026-05-06 15:06:00,176 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/UniGene
2026-05-06 15:06:00,178 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/UniProt
2026-05-06 15:06:00,178 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-riscv64-cpython-314/Bio/UniProt
2026-05-06 15:06:00,180 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-riscv64-cpython-314/Bio/UniProt
2026-05-06 15:06:00,182 root INFO creating build/lib.linux-riscv64-cpython-314/BioSQL
2026-05-06 15:06:00,183 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-riscv64-cpython-314/BioSQL
2026-05-06 15:06:00,184 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-riscv64-cpython-314/BioSQL
2026-05-06 15:06:00,186 root INFO copying BioSQL/__init__.py -> build/lib.linux-riscv64-cpython-314/BioSQL
2026-05-06 15:06:00,187 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-riscv64-cpython-314/BioSQL
2026-05-06 15:06:00,189 root INFO copying BioSQL/Loader.py -> build/lib.linux-riscv64-cpython-314/BioSQL
2026-05-06 15:06:00,191 root INFO running egg_info
2026-05-06 15:06:00,201 root INFO writing biopython.egg-info/PKG-INFO
2026-05-06 15:06:00,203 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt
2026-05-06 15:06:00,205 root INFO writing requirements to biopython.egg-info/requires.txt
2026-05-06 15:06:00,206 root INFO writing top-level names to biopython.egg-info/top_level.txt
2026-05-06 15:06:00,270 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt'
2026-05-06 15:06:00,447 root INFO reading manifest template 'MANIFEST.in'
2026-05-06 15:06:00,765 root WARNING warning: no previously-included files found matching 'Doc/_build'
2026-05-06 15:06:00,783 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip'
2026-05-06 15:06:00,793 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution
2026-05-06 15:06:00,803 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution
2026-05-06 15:06:00,813 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution
2026-05-06 15:06:00,823 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution
2026-05-06 15:06:00,845 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt'
2026-05-06 15:06:00,846 root INFO adding license file 'LICENSE'
2026-05-06 15:06:00,846 root INFO adding license file 'LICENSE.rst'
2026-05-06 15:06:00,967 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt'
/usr/lib/python3.14/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'Bio.Align.substitution_matrices' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'Bio.Align.substitution_matrices' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'Bio.Align.substitution_matrices' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'Bio.Align.substitution_matrices' to be distributed and are
        already explicitly excluding 'Bio.Align.substitution_matrices' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
2026-05-06 15:06:01,053 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-riscv64-cpython-314/Bio
2026-05-06 15:06:01,055 root INFO copying Bio/py.typed -> build/lib.linux-riscv64-cpython-314/Bio
2026-05-06 15:06:01,056 root INFO copying Bio/Align/_aligncore.c -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:06:01,057 root INFO copying Bio/Align/_alignmentcounts.c -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:06:01,059 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:06:01,061 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:06:01,064 root INFO copying Bio/Align/_pairwisealigner.h -> build/lib.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:06:01,066 root INFO copying Bio/Align/substitution_matrices/_arraycore.c -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices
2026-05-06 15:06:01,068 root INFO copying Bio/Align/substitution_matrices/_arraycore.h -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices
2026-05-06 15:06:01,069 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,070 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,071 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,073 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,074 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,076 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,077 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,078 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,080 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,081 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,083 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,084 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,085 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,087 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,088 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,090 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,091 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,092 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,094 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,095 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,096 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,098 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,099 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,100 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,102 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,103 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,105 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,106 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,107 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,109 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,111 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data
2026-05-06 15:06:01,112 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-riscv64-cpython-314/Bio/Cluster
2026-05-06 15:06:01,115 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-riscv64-cpython-314/Bio/Cluster
2026-05-06 15:06:01,116 root INFO copying Bio/Cluster/clustermodule.c -> build/lib.linux-riscv64-cpython-314/Bio/Cluster
2026-05-06 15:06:01,118 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,119 root INFO copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,121 root INFO copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,122 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,124 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,125 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,127 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,128 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,130 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,132 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,133 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,135 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,136 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,138 root INFO copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,139 root INFO copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,141 root INFO copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,142 root INFO copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,143 root INFO copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
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2026-05-06 15:06:01,146 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,147 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,149 root INFO copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,151 root INFO copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,152 root INFO copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,154 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,156 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
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2026-05-06 15:06:01,161 root INFO copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,164 root INFO copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,166 root INFO copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,167 root INFO copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
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2026-05-06 15:06:01,458 root INFO copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
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2026-05-06 15:06:01,465 root INFO copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,467 root INFO copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,468 root INFO copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,470 root INFO copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
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2026-05-06 15:06:01,475 root INFO copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
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2026-05-06 15:06:01,485 root INFO copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,486 root INFO copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
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2026-05-06 15:06:01,490 root INFO copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,491 root INFO copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
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2026-05-06 15:06:01,504 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
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2026-05-06 15:06:01,526 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,528 root INFO copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,529 root INFO copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
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2026-05-06 15:06:01,534 root INFO copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
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2026-05-06 15:06:01,540 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,541 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,543 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,544 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
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2026-05-06 15:06:01,547 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,548 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,550 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,551 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,553 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,554 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,556 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,558 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,559 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,561 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,562 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs
2026-05-06 15:06:01,564 root INFO creating build/lib.linux-riscv64-cpython-314/Bio/Entrez/XSDs
2026-05-06 15:06:01,565 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/XSDs
2026-05-06 15:06:01,566 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/XSDs
2026-05-06 15:06:01,568 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-riscv64-cpython-314/Bio/Entrez/XSDs
2026-05-06 15:06:01,569 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-riscv64-cpython-314/Bio/motifs
2026-05-06 15:06:01,571 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-riscv64-cpython-314/Bio/Nexus
2026-05-06 15:06:01,572 root INFO copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:06:01,573 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:06:01,575 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:06:01,577 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:06:01,579 root INFO copying BioSQL/py.typed -> build/lib.linux-riscv64-cpython-314/BioSQL
2026-05-06 15:06:01,603 root INFO running build_ext
2026-05-06 15:06:01,611 root INFO building 'Bio.Align._aligncore' extension
2026-05-06 15:06:01,612 root INFO creating build/temp.linux-riscv64-cpython-314/Bio/Align
2026-05-06 15:06:01,613 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Align/_aligncore.c -o build/temp.linux-riscv64-cpython-314/Bio/Align/_aligncore.o
2026-05-06 15:06:02,868 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/Align/_aligncore.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/Align/_aligncore.cpython-314-riscv64-linux-musl.so
2026-05-06 15:06:02,911 root INFO building 'Bio.Align._alignmentcounts' extension
2026-05-06 15:06:02,912 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Align/_alignmentcounts.c -o build/temp.linux-riscv64-cpython-314/Bio/Align/_alignmentcounts.o
2026-05-06 15:06:06,631 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/Align/_alignmentcounts.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/Align/_alignmentcounts.cpython-314-riscv64-linux-musl.so
2026-05-06 15:06:06,679 root INFO building 'Bio.Align._codonaligner' extension
2026-05-06 15:06:06,681 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Align/_codonaligner.c -o build/temp.linux-riscv64-cpython-314/Bio/Align/_codonaligner.o
2026-05-06 15:06:09,319 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/Align/_codonaligner.cpython-314-riscv64-linux-musl.so
2026-05-06 15:06:09,365 root INFO building 'Bio.Align._pairwisealigner' extension
2026-05-06 15:06:09,366 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-riscv64-cpython-314/Bio/Align/_pairwisealigner.o
2026-05-06 15:06:44,820 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/Align/_pairwisealigner.cpython-314-riscv64-linux-musl.so
2026-05-06 15:06:44,921 root INFO building 'Bio.Align.substitution_matrices._arraycore' extension
2026-05-06 15:06:44,922 root INFO creating build/temp.linux-riscv64-cpython-314/Bio/Align/substitution_matrices
2026-05-06 15:06:44,923 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Align//substitution_matrices/_arraycore.c -o build/temp.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/_arraycore.o
2026-05-06 15:06:45,814 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/_arraycore.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/_arraycore.cpython-314-riscv64-linux-musl.so
2026-05-06 15:06:45,856 root INFO building 'Bio.cpairwise2' extension
2026-05-06 15:06:45,857 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/cpairwise2module.c -o build/temp.linux-riscv64-cpython-314/Bio/cpairwise2module.o
2026-05-06 15:06:47,413 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/cpairwise2.cpython-314-riscv64-linux-musl.so
2026-05-06 15:06:47,456 root INFO building 'Bio.Nexus.cnexus' extension
2026-05-06 15:06:47,457 root INFO creating build/temp.linux-riscv64-cpython-314/Bio/Nexus
2026-05-06 15:06:47,458 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Nexus/cnexus.c -o build/temp.linux-riscv64-cpython-314/Bio/Nexus/cnexus.o
2026-05-06 15:06:48,115 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/Nexus/cnexus.cpython-314-riscv64-linux-musl.so
2026-05-06 15:06:48,155 root INFO building 'Bio.motifs._pwm' extension
2026-05-06 15:06:48,156 root INFO creating build/temp.linux-riscv64-cpython-314/Bio/motifs
2026-05-06 15:06:48,157 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/motifs/_pwm.c -o build/temp.linux-riscv64-cpython-314/Bio/motifs/_pwm.o
2026-05-06 15:06:48,913 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/motifs/_pwm.cpython-314-riscv64-linux-musl.so
2026-05-06 15:06:48,955 root INFO building 'Bio.Cluster._cluster' extension
2026-05-06 15:06:48,956 root INFO creating build/temp.linux-riscv64-cpython-314/Bio/Cluster
2026-05-06 15:06:48,957 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Cluster/cluster.c -o build/temp.linux-riscv64-cpython-314/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY
2026-05-06 15:07:00,313 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Cluster/clustermodule.c -o build/temp.linux-riscv64-cpython-314/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY
2026-05-06 15:07:03,726 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/Cluster/cluster.o build/temp.linux-riscv64-cpython-314/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/Cluster/_cluster.cpython-314-riscv64-linux-musl.so
2026-05-06 15:07:03,784 root INFO building 'Bio.PDB.ccealign' extension
2026-05-06 15:07:03,785 root INFO creating build/temp.linux-riscv64-cpython-314/Bio/PDB
2026-05-06 15:07:03,786 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-riscv64-cpython-314/Bio/PDB/ccealignmodule.o
2026-05-06 15:07:05,477 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/PDB/ccealign.cpython-314-riscv64-linux-musl.so
2026-05-06 15:07:05,519 root INFO building 'Bio.PDB.kdtrees' extension
2026-05-06 15:07:05,520 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/PDB/kdtrees.c -o build/temp.linux-riscv64-cpython-314/Bio/PDB/kdtrees.o
2026-05-06 15:07:07,623 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/PDB/kdtrees.cpython-314-riscv64-linux-musl.so
2026-05-06 15:07:07,668 root INFO building 'Bio.PDB._bcif_helper' extension
2026-05-06 15:07:07,669 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-riscv64-cpython-314/Bio/PDB/bcifhelpermodule.o
2026-05-06 15:07:08,424 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/PDB/bcifhelpermodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/PDB/_bcif_helper.cpython-314-riscv64-linux-musl.so
2026-05-06 15:07:08,464 root INFO building 'Bio.SeqIO._twoBitIO' extension
2026-05-06 15:07:08,466 root INFO creating build/temp.linux-riscv64-cpython-314/Bio/SeqIO
2026-05-06 15:07:08,466 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-riscv64-cpython-314/Bio/SeqIO/_twoBitIO.o
2026-05-06 15:07:09,429 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-314/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-riscv64-cpython-314/Bio/SeqIO/_twoBitIO.cpython-314-riscv64-linux-musl.so
2026-05-06 15:07:09,499 root INFO installing to build/bdist.linux-riscv64/wheel
2026-05-06 15:07:09,499 root INFO running install
2026-05-06 15:07:09,538 root INFO running install_lib
2026-05-06 15:07:09,552 root INFO creating build/bdist.linux-riscv64/wheel
2026-05-06 15:07:09,553 root INFO creating build/bdist.linux-riscv64/wheel/BioSQL
2026-05-06 15:07:09,554 root INFO copying build/lib.linux-riscv64-cpython-314/BioSQL/BioSeq.py -> build/bdist.linux-riscv64/wheel/./BioSQL
2026-05-06 15:07:09,556 root INFO copying build/lib.linux-riscv64-cpython-314/BioSQL/DBUtils.py -> build/bdist.linux-riscv64/wheel/./BioSQL
2026-05-06 15:07:09,557 root INFO copying build/lib.linux-riscv64-cpython-314/BioSQL/__init__.py -> build/bdist.linux-riscv64/wheel/./BioSQL
2026-05-06 15:07:09,559 root INFO copying build/lib.linux-riscv64-cpython-314/BioSQL/py.typed -> build/bdist.linux-riscv64/wheel/./BioSQL
2026-05-06 15:07:09,560 root INFO copying build/lib.linux-riscv64-cpython-314/BioSQL/BioSeqDatabase.py -> build/bdist.linux-riscv64/wheel/./BioSQL
2026-05-06 15:07:09,561 root INFO copying build/lib.linux-riscv64-cpython-314/BioSQL/Loader.py -> build/bdist.linux-riscv64/wheel/./BioSQL
2026-05-06 15:07:09,564 root INFO creating build/bdist.linux-riscv64/wheel/Bio
2026-05-06 15:07:09,565 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Affy
2026-05-06 15:07:09,566 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Affy/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Affy
2026-05-06 15:07:09,567 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Affy/CelFile.py -> build/bdist.linux-riscv64/wheel/./Bio/Affy
2026-05-06 15:07:09,568 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqRecord.py -> build/bdist.linux-riscv64/wheel/./Bio
2026-05-06 15:07:09,571 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Medline
2026-05-06 15:07:09,571 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Medline/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Medline
2026-05-06 15:07:09,573 root INFO creating build/bdist.linux-riscv64/wheel/Bio/GenBank
2026-05-06 15:07:09,574 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/GenBank/Record.py -> build/bdist.linux-riscv64/wheel/./Bio/GenBank
2026-05-06 15:07:09,576 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/GenBank/Scanner.py -> build/bdist.linux-riscv64/wheel/./Bio/GenBank
2026-05-06 15:07:09,578 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/GenBank/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/GenBank
2026-05-06 15:07:09,580 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/GenBank/utils.py -> build/bdist.linux-riscv64/wheel/./Bio/GenBank
2026-05-06 15:07:09,581 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Data
2026-05-06 15:07:09,582 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Data/CodonTable.py -> build/bdist.linux-riscv64/wheel/./Bio/Data
2026-05-06 15:07:09,584 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Data/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Data
2026-05-06 15:07:09,585 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Data/PDBData.py -> build/bdist.linux-riscv64/wheel/./Bio/Data
2026-05-06 15:07:09,587 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Data/IUPACData.py -> build/bdist.linux-riscv64/wheel/./Bio/Data
2026-05-06 15:07:09,588 root INFO creating build/bdist.linux-riscv64/wheel/Bio/AlignIO
2026-05-06 15:07:09,589 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/Interfaces.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO
2026-05-06 15:07:09,591 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/MauveIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO
2026-05-06 15:07:09,592 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO
2026-05-06 15:07:09,593 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO
2026-05-06 15:07:09,595 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/MsfIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO
2026-05-06 15:07:09,596 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO
2026-05-06 15:07:09,598 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/MafIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO
2026-05-06 15:07:09,600 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO
2026-05-06 15:07:09,601 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/NexusIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO
2026-05-06 15:07:09,602 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO
2026-05-06 15:07:09,604 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-riscv64/wheel/./Bio/AlignIO
2026-05-06 15:07:09,606 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Graphics
2026-05-06 15:07:09,607 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics
2026-05-06 15:07:09,608 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics
2026-05-06 15:07:09,609 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/KGML_vis.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics
2026-05-06 15:07:09,611 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/Distribution.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics
2026-05-06 15:07:09,612 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics
2026-05-06 15:07:09,614 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics
2026-05-06 15:07:09,615 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/Comparative.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics
2026-05-06 15:07:09,617 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram
2026-05-06 15:07:09,618 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram
2026-05-06 15:07:09,619 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram
2026-05-06 15:07:09,620 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram
2026-05-06 15:07:09,622 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram
2026-05-06 15:07:09,623 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram
2026-05-06 15:07:09,624 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram
2026-05-06 15:07:09,626 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram
2026-05-06 15:07:09,628 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram
2026-05-06 15:07:09,630 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram
2026-05-06 15:07:09,631 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram
2026-05-06 15:07:09,632 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram
2026-05-06 15:07:09,634 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-riscv64/wheel/./Bio/Graphics/GenomeDiagram
2026-05-06 15:07:09,636 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align
2026-05-06 15:07:09,637 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_codonaligner.c -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,638 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/exonerate.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,640 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/bigbed.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,642 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_pairwisealigner.h -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,643 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices
2026-05-06 15:07:09,644 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/_arraycore.c -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices
2026-05-06 15:07:09,646 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices
2026-05-06 15:07:09,648 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,649 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,650 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,651 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,652 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,654 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,655 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,656 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,658 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,659 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,660 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,661 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,663 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,664 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,665 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,666 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,668 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,669 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,670 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,671 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,673 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,674 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,675 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,676 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,678 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,679 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,681 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,682 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,683 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,684 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,686 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices/data
2026-05-06 15:07:09,687 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/_arraycore.h -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices
2026-05-06 15:07:09,688 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/substitution_matrices/_arraycore.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Align/substitution_matrices
2026-05-06 15:07:09,690 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/hhr.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,691 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/chain.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,692 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,695 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/phylip.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,696 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/bed.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,698 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_pairwisealigner.c -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,701 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/AlignInfo.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,702 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/bigpsl.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,704 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/interfaces.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,705 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/emboss.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,707 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/analysis.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,709 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/bigmaf.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,710 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/stockholm.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,711 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/clustal.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,713 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/fasta.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,714 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/maf.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,716 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_aligncore.c -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,717 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/nexus.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,718 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/mauve.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,720 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_alignmentcounts.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,721 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/sam.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,723 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/psl.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,725 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_alignmentcounts.c -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,726 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_pairwisealigner.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,729 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/a2m.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,730 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_aligncore.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,732 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/_codonaligner.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,733 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/tabular.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,735 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Align/msf.py -> build/bdist.linux-riscv64/wheel/./Bio/Align
2026-05-06 15:07:09,736 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/cpairwise2module.c -> build/bdist.linux-riscv64/wheel/./Bio
2026-05-06 15:07:09,738 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Seq.py -> build/bdist.linux-riscv64/wheel/./Bio
2026-05-06 15:07:09,740 root INFO creating build/bdist.linux-riscv64/wheel/Bio/NMR
2026-05-06 15:07:09,741 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/NMR/NOEtools.py -> build/bdist.linux-riscv64/wheel/./Bio/NMR
2026-05-06 15:07:09,743 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/NMR/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/NMR
2026-05-06 15:07:09,744 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/NMR/xpktools.py -> build/bdist.linux-riscv64/wheel/./Bio/NMR
2026-05-06 15:07:09,746 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SVDSuperimposer
2026-05-06 15:07:09,747 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SVDSuperimposer
2026-05-06 15:07:09,748 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/cpairwise2.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio
2026-05-06 15:07:09,750 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/bgzf.py -> build/bdist.linux-riscv64/wheel/./Bio
2026-05-06 15:07:09,751 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio
2026-05-06 15:07:09,753 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqFeature.py -> build/bdist.linux-riscv64/wheel/./Bio
2026-05-06 15:07:09,755 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Nexus
2026-05-06 15:07:09,756 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Nexus/cnexus.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Nexus
2026-05-06 15:07:09,757 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Nexus/Nodes.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus
2026-05-06 15:07:09,759 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Nexus/Nexus.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus
2026-05-06 15:07:09,761 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Nexus/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus
2026-05-06 15:07:09,762 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Nexus/cnexus.c -> build/bdist.linux-riscv64/wheel/./Bio/Nexus
2026-05-06 15:07:09,763 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Nexus/StandardData.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus
2026-05-06 15:07:09,764 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Nexus/Trees.py -> build/bdist.linux-riscv64/wheel/./Bio/Nexus
2026-05-06 15:07:09,766 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO
2026-05-06 15:07:09,767 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO
2026-05-06 15:07:09,769 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/HHsuiteIO
2026-05-06 15:07:09,770 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HHsuiteIO
2026-05-06 15:07:09,771 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HHsuiteIO
2026-05-06 15:07:09,773 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/BlatIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO
2026-05-06 15:07:09,774 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO
2026-05-06 15:07:09,775 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO
2026-05-06 15:07:09,777 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO
2026-05-06 15:07:09,778 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO
2026-05-06 15:07:09,780 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO
2026-05-06 15:07:09,781 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO
2026-05-06 15:07:09,783 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/HmmerIO
2026-05-06 15:07:09,784 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO
2026-05-06 15:07:09,785 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/BlastIO
2026-05-06 15:07:09,787 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/BlastIO
2026-05-06 15:07:09,788 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/BlastIO
2026-05-06 15:07:09,790 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/InterproscanIO
2026-05-06 15:07:09,791 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InterproscanIO
2026-05-06 15:07:09,793 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InterproscanIO
2026-05-06 15:07:09,794 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model
2026-05-06 15:07:09,795 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model
2026-05-06 15:07:09,796 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model/_base.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model
2026-05-06 15:07:09,798 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model/query.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model
2026-05-06 15:07:09,799 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model
2026-05-06 15:07:09,801 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_model/hit.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/_model
2026-05-06 15:07:09,803 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO
2026-05-06 15:07:09,804 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO
2026-05-06 15:07:09,805 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO
2026-05-06 15:07:09,807 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO
2026-05-06 15:07:09,808 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO
2026-05-06 15:07:09,810 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/ExonerateIO
2026-05-06 15:07:09,811 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_index.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO
2026-05-06 15:07:09,812 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO
2026-05-06 15:07:09,814 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/_utils.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO
2026-05-06 15:07:09,816 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/InfernalIO
2026-05-06 15:07:09,816 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InfernalIO
2026-05-06 15:07:09,818 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO/infernal_text.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InfernalIO
2026-05-06 15:07:09,819 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO/infernal_tab.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InfernalIO
2026-05-06 15:07:09,821 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SearchIO/InfernalIO/_base.py -> build/bdist.linux-riscv64/wheel/./Bio/SearchIO/InfernalIO
2026-05-06 15:07:09,822 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Blast
2026-05-06 15:07:09,823 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Blast/NCBIWWW.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast
2026-05-06 15:07:09,825 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Blast/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast
2026-05-06 15:07:09,827 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Blast/_parser.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast
2026-05-06 15:07:09,828 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Blast/_writers.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast
2026-05-06 15:07:09,830 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Blast/NCBIXML.py -> build/bdist.linux-riscv64/wheel/./Bio/Blast
2026-05-06 15:07:09,832 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Geo
2026-05-06 15:07:09,833 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Geo/Record.py -> build/bdist.linux-riscv64/wheel/./Bio/Geo
2026-05-06 15:07:09,834 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Geo/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Geo
2026-05-06 15:07:09,836 root INFO creating build/bdist.linux-riscv64/wheel/Bio/UniProt
2026-05-06 15:07:09,836 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/UniProt/GOA.py -> build/bdist.linux-riscv64/wheel/./Bio/UniProt
2026-05-06 15:07:09,838 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/UniProt/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/UniProt
2026-05-06 15:07:09,839 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/File.py -> build/bdist.linux-riscv64/wheel/./Bio
2026-05-06 15:07:09,841 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/py.typed -> build/bdist.linux-riscv64/wheel/./Bio
2026-05-06 15:07:09,842 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SCOP
2026-05-06 15:07:09,843 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SCOP/Raf.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP
2026-05-06 15:07:09,845 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SCOP/Residues.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP
2026-05-06 15:07:09,846 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SCOP/Cla.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP
2026-05-06 15:07:09,847 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SCOP/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP
2026-05-06 15:07:09,849 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SCOP/Dom.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP
2026-05-06 15:07:09,850 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SCOP/Hie.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP
2026-05-06 15:07:09,851 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SCOP/Des.py -> build/bdist.linux-riscv64/wheel/./Bio/SCOP
2026-05-06 15:07:09,853 root INFO creating build/bdist.linux-riscv64/wheel/Bio/UniGene
2026-05-06 15:07:09,854 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/UniGene/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/UniGene
2026-05-06 15:07:09,856 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs
2026-05-06 15:07:09,857 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/_pwm.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-05-06 15:07:09,858 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/pfm.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-05-06 15:07:09,860 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/thresholds.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-05-06 15:07:09,861 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs/jaspar
2026-05-06 15:07:09,862 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/jaspar/db.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs/jaspar
2026-05-06 15:07:09,864 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs/jaspar
2026-05-06 15:07:09,865 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-05-06 15:07:09,867 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/minimal.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-05-06 15:07:09,868 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/meme.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-05-06 15:07:09,870 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/alignace.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-05-06 15:07:09,871 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/matrix.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-05-06 15:07:09,872 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/clusterbuster.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-05-06 15:07:09,874 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/transfac.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-05-06 15:07:09,875 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/mast.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-05-06 15:07:09,877 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/xms.py -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-05-06 15:07:09,878 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/motifs/_pwm.c -> build/bdist.linux-riscv64/wheel/./Bio/motifs
2026-05-06 15:07:09,880 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Sequencing
2026-05-06 15:07:09,880 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Sequencing/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Sequencing
2026-05-06 15:07:09,882 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Sequencing/Ace.py -> build/bdist.linux-riscv64/wheel/./Bio/Sequencing
2026-05-06 15:07:09,883 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Sequencing/Phd.py -> build/bdist.linux-riscv64/wheel/./Bio/Sequencing
2026-05-06 15:07:09,885 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Restriction
2026-05-06 15:07:09,886 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Restriction/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Restriction
2026-05-06 15:07:09,887 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Restriction/PrintFormat.py -> build/bdist.linux-riscv64/wheel/./Bio/Restriction
2026-05-06 15:07:09,889 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-riscv64/wheel/./Bio/Restriction
2026-05-06 15:07:09,894 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Restriction/Restriction.py -> build/bdist.linux-riscv64/wheel/./Bio/Restriction
2026-05-06 15:07:09,896 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG
2026-05-06 15:07:09,897 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG
2026-05-06 15:07:09,899 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML
2026-05-06 15:07:09,900 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/KGML
2026-05-06 15:07:09,902 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/KGML
2026-05-06 15:07:09,903 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/KGML
2026-05-06 15:07:09,905 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/REST.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG
2026-05-06 15:07:09,907 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Enzyme
2026-05-06 15:07:09,908 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/Enzyme
2026-05-06 15:07:09,910 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Gene
2026-05-06 15:07:09,911 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/Gene
2026-05-06 15:07:09,912 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Map
2026-05-06 15:07:09,913 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/Map/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/Map
2026-05-06 15:07:09,914 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Compound
2026-05-06 15:07:09,915 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/KEGG/Compound
2026-05-06 15:07:09,917 root INFO creating build/bdist.linux-riscv64/wheel/Bio/phenotype
2026-05-06 15:07:09,918 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/phenotype/phen_micro.py -> build/bdist.linux-riscv64/wheel/./Bio/phenotype
2026-05-06 15:07:09,920 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/phenotype/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/phenotype
2026-05-06 15:07:09,921 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/phenotype/pm_fitting.py -> build/bdist.linux-riscv64/wheel/./Bio/phenotype
2026-05-06 15:07:09,923 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo
2026-05-06 15:07:09,924 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-05-06 15:07:09,925 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/CDAOIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-05-06 15:07:09,927 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-05-06 15:07:09,929 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/CDAO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-05-06 15:07:09,930 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-05-06 15:07:09,931 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-05-06 15:07:09,933 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML
2026-05-06 15:07:09,934 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML
2026-05-06 15:07:09,936 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML
2026-05-06 15:07:09,937 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML
2026-05-06 15:07:09,938 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML
2026-05-06 15:07:09,940 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML
2026-05-06 15:07:09,941 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML
2026-05-06 15:07:09,943 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML
2026-05-06 15:07:09,944 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML
2026-05-06 15:07:09,945 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo/PAML
2026-05-06 15:07:09,947 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/Newick.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-05-06 15:07:09,948 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PhyloXML.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-05-06 15:07:09,950 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/NexusIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-05-06 15:07:09,951 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/Consensus.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-05-06 15:07:09,953 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/_io.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-05-06 15:07:09,954 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/BaseTree.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-05-06 15:07:09,956 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/_utils.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-05-06 15:07:09,957 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-05-06 15:07:09,959 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/NewickIO.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-05-06 15:07:09,960 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Phylo/NeXML.py -> build/bdist.linux-riscv64/wheel/./Bio/Phylo
2026-05-06 15:07:09,962 root INFO creating build/bdist.linux-riscv64/wheel/Bio/codonalign
2026-05-06 15:07:09,963 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/codonalign/codonalignment.py -> build/bdist.linux-riscv64/wheel/./Bio/codonalign
2026-05-06 15:07:09,965 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/codonalign/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/codonalign
2026-05-06 15:07:09,966 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/codonalign/codonseq.py -> build/bdist.linux-riscv64/wheel/./Bio/codonalign
2026-05-06 15:07:09,968 root INFO creating build/bdist.linux-riscv64/wheel/Bio/HMM
2026-05-06 15:07:09,969 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/HMM/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/HMM
2026-05-06 15:07:09,971 root INFO creating build/bdist.linux-riscv64/wheel/Bio/TogoWS
2026-05-06 15:07:09,971 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/TogoWS/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/TogoWS
2026-05-06 15:07:09,973 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SeqUtils
2026-05-06 15:07:09,974 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqUtils/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils
2026-05-06 15:07:09,976 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils
2026-05-06 15:07:09,977 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqUtils/lcc.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils
2026-05-06 15:07:09,978 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils
2026-05-06 15:07:09,980 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils
2026-05-06 15:07:09,981 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils
2026-05-06 15:07:09,983 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqUtils
2026-05-06 15:07:09,985 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Cluster
2026-05-06 15:07:09,986 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Cluster/_cluster.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/Cluster
2026-05-06 15:07:09,988 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Cluster/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Cluster
2026-05-06 15:07:09,989 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Cluster/cluster.h -> build/bdist.linux-riscv64/wheel/./Bio/Cluster
2026-05-06 15:07:09,991 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Cluster/cluster.c -> build/bdist.linux-riscv64/wheel/./Bio/Cluster
2026-05-06 15:07:09,993 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Cluster/clustermodule.c -> build/bdist.linux-riscv64/wheel/./Bio/Cluster
2026-05-06 15:07:09,996 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Alphabet
2026-05-06 15:07:09,996 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Alphabet/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Alphabet
2026-05-06 15:07:09,998 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SwissProt
2026-05-06 15:07:09,999 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SwissProt/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SwissProt
2026-05-06 15:07:10,001 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SwissProt/KeyWList.py -> build/bdist.linux-riscv64/wheel/./Bio/SwissProt
2026-05-06 15:07:10,002 root INFO creating build/bdist.linux-riscv64/wheel/Bio/ExPASy
2026-05-06 15:07:10,003 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy
2026-05-06 15:07:10,005 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/ExPASy/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy
2026-05-06 15:07:10,006 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/ExPASy/Enzyme.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy
2026-05-06 15:07:10,007 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/ExPASy/Prodoc.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy
2026-05-06 15:07:10,009 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy
2026-05-06 15:07:10,010 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/ExPASy/Prosite.py -> build/bdist.linux-riscv64/wheel/./Bio/ExPASy
2026-05-06 15:07:10,012 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SeqIO
2026-05-06 15:07:10,013 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/PdbIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,014 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/Interfaces.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,016 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,017 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,019 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/SffIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,021 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/_twoBitIO.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,022 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/PirIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,023 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/IgIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,025 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/QualityIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,027 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,028 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/AbiIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,030 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/GckIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,031 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/AceIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,033 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,034 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/_index.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,036 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/TabIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,037 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/GfaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,039 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,040 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,042 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/NibIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,043 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/SwissIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,045 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/PhdIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,046 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,048 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,049 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-riscv64/wheel/./Bio/SeqIO
2026-05-06 15:07:10,051 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Compass
2026-05-06 15:07:10,052 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Compass/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Compass
2026-05-06 15:07:10,054 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PopGen
2026-05-06 15:07:10,055 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PopGen/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/PopGen
2026-05-06 15:07:10,056 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop
2026-05-06 15:07:10,057 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/PopGen/GenePop
2026-05-06 15:07:10,059 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-riscv64/wheel/./Bio/PopGen/GenePop
2026-05-06 15:07:10,060 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-riscv64/wheel/./Bio/PopGen/GenePop
2026-05-06 15:07:10,062 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez
2026-05-06 15:07:10,063 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Entrez
2026-05-06 15:07:10,064 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/Parser.py -> build/bdist.linux-riscv64/wheel/./Bio/Entrez
2026-05-06 15:07:10,066 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez/XSDs
2026-05-06 15:07:10,067 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/XSDs
2026-05-06 15:07:10,068 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/XSDs
2026-05-06 15:07:10,070 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/XSDs
2026-05-06 15:07:10,072 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2026-05-06 15:07:10,073 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,075 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,076 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,077 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,079 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,080 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,082 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,083 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,084 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,086 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,087 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,088 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,090 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,091 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,094 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,095 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,097 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,099 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,100 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,102 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,103 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,104 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,106 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,107 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,109 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,110 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,112 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,113 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,114 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,115 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,117 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,119 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,120 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,121 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,123 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,124 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,126 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,127 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,128 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,130 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,131 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,133 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,134 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,136 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,137 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,139 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,140 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,141 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,143 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,144 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,145 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,147 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,148 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,151 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,153 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,154 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,156 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,157 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,158 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,160 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,161 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,162 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,164 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,165 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,166 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,168 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,169 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,170 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,172 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,173 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,174 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,176 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,177 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,179 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,180 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,181 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,183 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,185 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,186 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,187 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,188 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,190 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,191 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,193 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,195 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,196 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,198 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,199 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,200 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,202 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,203 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,205 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-05-06 15:07:10,209 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,210 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-05-06 15:07:10,214 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/articlemeta.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-05-06 15:07:10,218 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,219 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,221 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,222 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-05-06 15:07:10,225 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-05-06 15:07:10,227 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,229 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-05-06 15:07:10,234 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,235 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-05-06 15:07:10,238 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-05-06 15:07:10,244 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,246 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,247 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,248 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-05-06 15:07:10,252 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,253 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-05-06 15:07:10,260 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,261 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,262 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-05-06 15:07:10,266 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-05-06 15:07:10,269 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,271 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,272 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,274 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,275 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,277 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,278 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,279 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,281 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-05-06 15:07:10,284 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,285 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-05-06 15:07:10,290 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-05-06 15:07:10,304 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
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2026-05-06 15:07:10,368 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,370 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,371 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,372 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,374 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,375 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,377 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,378 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,380 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,381 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,383 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,384 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,386 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,387 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,388 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,390 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,391 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,393 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,394 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,396 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,397 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,398 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,400 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,402 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,404 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,405 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,407 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,408 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,409 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,411 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,412 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,413 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,415 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,416 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,417 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,419 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,420 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,421 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,423 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,424 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,426 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,427 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,429 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,430 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,431 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,433 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,434 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,435 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,437 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,438 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,440 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,441 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,443 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,444 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,446 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,447 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,448 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,450 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,451 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,453 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,454 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,456 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,458 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,459 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,460 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,462 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,463 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,465 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,466 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,467 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,469 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,470 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,471 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,473 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,474 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,476 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,477 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,479 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,480 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,482 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,483 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,484 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,486 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,487 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,489 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,490 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,491 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,493 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-riscv64/wheel/./Bio/Entrez/DTDs
2026-05-06 15:07:10,495 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/_utils.py -> build/bdist.linux-riscv64/wheel/./Bio
2026-05-06 15:07:10,496 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Pathway
2026-05-06 15:07:10,497 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Pathway/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Pathway
2026-05-06 15:07:10,499 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep
2026-05-06 15:07:10,500 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/Pathway/Rep
2026-05-06 15:07:10,501 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-riscv64/wheel/./Bio/Pathway/Rep
2026-05-06 15:07:10,502 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-riscv64/wheel/./Bio/Pathway/Rep
2026-05-06 15:07:10,504 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/pairwise2.py -> build/bdist.linux-riscv64/wheel/./Bio
2026-05-06 15:07:10,506 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PDB
2026-05-06 15:07:10,507 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/ccealign.cpython-314-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-05-06 15:07:10,508 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/Structure.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-05-06 15:07:10,510 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/Model.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-05-06 15:07:10,511 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/Selection.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-05-06 15:07:10,512 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/FragmentMapper.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-05-06 15:07:10,514 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/kdtrees.c -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-05-06 15:07:10,515 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/PDBExceptions.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-05-06 15:07:10,517 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/StructureAlignment.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-05-06 15:07:10,518 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/DSSP.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-05-06 15:07:10,520 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/ic_rebuild.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-05-06 15:07:10,521 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/__init__.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-05-06 15:07:10,522 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/MMCIFParser.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-05-06 15:07:10,524 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-05-06 15:07:10,525 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/qcprot.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-05-06 15:07:10,527 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/PDBParser.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-05-06 15:07:10,528 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/Entity.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-05-06 15:07:10,530 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/ccealignmodule.c -> build/bdist.linux-riscv64/wheel/./Bio/PDB
2026-05-06 15:07:10,531 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/Dice.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
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2026-05-06 15:07:10,534 root INFO copying build/lib.linux-riscv64-cpython-314/Bio/PDB/mmcifio.py -> build/bdist.linux-riscv64/wheel/./Bio/PDB
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2026-05-06 15:07:11,764 wheel INFO adding 'BioSQL/py.typed'
2026-05-06 15:07:11,766 wheel INFO adding 'biopython-1.86.dist-info/licenses/LICENSE'
2026-05-06 15:07:11,768 wheel INFO adding 'biopython-1.86.dist-info/licenses/LICENSE.rst'
2026-05-06 15:07:11,769 wheel INFO adding 'biopython-1.86.dist-info/METADATA'
2026-05-06 15:07:11,770 wheel INFO adding 'biopython-1.86.dist-info/WHEEL'
2026-05-06 15:07:11,771 wheel INFO adding 'biopython-1.86.dist-info/top_level.txt'
2026-05-06 15:07:11,779 wheel INFO adding 'biopython-1.86.dist-info/RECORD'
2026-05-06 15:07:11,788 root INFO removing build/bdist.linux-riscv64/wheel
2026-05-06 15:07:11,885 gpep517 INFO The backend produced .dist/biopython-1.86-cp314-cp314-linux_riscv64.whl
biopython-1.86-cp314-cp314-linux_riscv64.whl
>>> py3-biopython: Entering fakeroot...
>>> py3-biopython-pyc*: Running split function pyc...
'usr/lib/python3.14/site-packages/BioSQL/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/BioSQL/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Affy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Affy/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Medline/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Medline/__pycache__'
'usr/lib/python3.14/site-packages/Bio/GenBank/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/GenBank/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Data/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Data/__pycache__'
'usr/lib/python3.14/site-packages/Bio/AlignIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/AlignIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Graphics/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Graphics/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Graphics/GenomeDiagram/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Align/substitution_matrices/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Align/substitution_matrices/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Align/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Align/__pycache__'
'usr/lib/python3.14/site-packages/Bio/NMR/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/NMR/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SVDSuperimposer/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SVDSuperimposer/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Nexus/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Nexus/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/HmmerIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/HmmerIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/BlastIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/BlastIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/InterproscanIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/_model/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/_model/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/ExonerateIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SearchIO/InfernalIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/InfernalIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Blast/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Blast/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Geo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Geo/__pycache__'
'usr/lib/python3.14/site-packages/Bio/UniProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/UniProt/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SCOP/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SCOP/__pycache__'
'usr/lib/python3.14/site-packages/Bio/UniGene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/UniGene/__pycache__'
'usr/lib/python3.14/site-packages/Bio/motifs/jaspar/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/motifs/jaspar/__pycache__'
'usr/lib/python3.14/site-packages/Bio/motifs/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/motifs/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Sequencing/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Sequencing/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Restriction/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Restriction/__pycache__'
'usr/lib/python3.14/site-packages/Bio/KEGG/KGML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/KEGG/KGML/__pycache__'
'usr/lib/python3.14/site-packages/Bio/KEGG/Enzyme/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/KEGG/Enzyme/__pycache__'
'usr/lib/python3.14/site-packages/Bio/KEGG/Gene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/KEGG/Gene/__pycache__'
'usr/lib/python3.14/site-packages/Bio/KEGG/Map/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/KEGG/Map/__pycache__'
'usr/lib/python3.14/site-packages/Bio/KEGG/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/KEGG/__pycache__'
'usr/lib/python3.14/site-packages/Bio/KEGG/Compound/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/KEGG/Compound/__pycache__'
'usr/lib/python3.14/site-packages/Bio/phenotype/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/phenotype/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Phylo/PAML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Phylo/PAML/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Phylo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Phylo/__pycache__'
'usr/lib/python3.14/site-packages/Bio/codonalign/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/codonalign/__pycache__'
'usr/lib/python3.14/site-packages/Bio/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/__pycache__'
'usr/lib/python3.14/site-packages/Bio/HMM/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/HMM/__pycache__'
'usr/lib/python3.14/site-packages/Bio/TogoWS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/TogoWS/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SeqUtils/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SeqUtils/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Cluster/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Cluster/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Alphabet/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Alphabet/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SwissProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SwissProt/__pycache__'
'usr/lib/python3.14/site-packages/Bio/ExPASy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/ExPASy/__pycache__'
'usr/lib/python3.14/site-packages/Bio/SeqIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SeqIO/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Compass/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Compass/__pycache__'
'usr/lib/python3.14/site-packages/Bio/PopGen/GenePop/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/PopGen/GenePop/__pycache__'
'usr/lib/python3.14/site-packages/Bio/PopGen/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/PopGen/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Entrez/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Entrez/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Pathway/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Pathway/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Pathway/Rep/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Pathway/Rep/__pycache__'
'usr/lib/python3.14/site-packages/Bio/PDB/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/PDB/__pycache__'
'usr/lib/python3.14/site-packages/Bio/PDB/mmtf/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/PDB/mmtf/__pycache__'
'usr/lib/python3.14/site-packages/Bio/CAPS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/CAPS/__pycache__'
'usr/lib/python3.14/site-packages/Bio/Emboss/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Emboss/__pycache__'
>>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc...
>>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc
>>> py3-biopython*: Running postcheck for py3-biopython
>>> py3-biopython*: Preparing package py3-biopython...
>>> py3-biopython*: Stripping binaries
>>> py3-biopython*: Scanning shared objects
>>> py3-biopython-pyc*: Tracing dependencies...
	python3~3.14
>>> py3-biopython-pyc*: Package size: 6.2 MB
>>> py3-biopython-pyc*: Compressing data...
>>> py3-biopython-pyc*: Create checksum...
>>> py3-biopython-pyc*: Create py3-biopython-pyc-1.86-r1.apk
>>> py3-biopython*: Tracing dependencies...
	py3-numpy
	python3
	python3~3.14
	so:libc.musl-riscv64.so.1
>>> py3-biopython*: Package size: 10.7 MB
>>> py3-biopython*: Compressing data...
>>> py3-biopython*: Create checksum...
>>> py3-biopython*: Create py3-biopython-1.86-r1.apk
>>> py3-biopython: Build complete at Wed, 06 May 2026 15:07:26 +0000 elapsed time 0h 1m 52s
>>> py3-biopython: Cleaning up srcdir
>>> py3-biopython: Cleaning up pkgdir
>>> py3-biopython: Cleaning up tmpdir
>>> py3-biopython: Uninstalling dependencies...
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Executing busybox-1.37.0-r31.trigger
OK: 1162.3 MiB in 136 packages
>>> py3-biopython: Updating the community/riscv64 repository index...
>>> py3-biopython: Signing the index...