>>> py3-bioframe: Building community/py3-bioframe 0.8.0-r0 (using abuild 3.15.0_rc2-r0) started Thu, 10 Apr 2025 13:33:32 +0000 >>> py3-bioframe: Validating /home/buildozer/aports/community/py3-bioframe/APKBUILD... >>> py3-bioframe: Analyzing dependencies... >>> py3-bioframe: Installing for build: build-base py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools py3-gpep517 py3-hatchling py3-wheel py3-pytest-xdist (1/104) Installing openblas (0.3.28-r0) (2/104) Installing libffi (3.4.7-r0) (3/104) Installing gdbm (1.24-r0) (4/104) Installing mpdecimal (4.0.0-r0) (5/104) Installing libpanelw (6.5_p20250216-r0) (6/104) Installing sqlite-libs (3.49.1-r0) (7/104) Installing python3 (3.12.10-r0) (8/104) Installing python3-pycache-pyc0 (3.12.10-r0) (9/104) Installing pyc (3.12.10-r0) (10/104) Installing py3-contourpy-pyc (1.3.1-r0) (11/104) Installing py3-cycler (0.12.1-r1) (12/104) Installing py3-cycler-pyc (0.12.1-r1) (13/104) Installing py3-six 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Installing libwebpdemux (1.5.0-r0) (37/104) Installing libwebpmux (1.5.0-r0) (38/104) Installing libxau (1.0.12-r0) (39/104) Installing libmd (1.1.0-r0) (40/104) Installing libbsd (0.12.2-r0) (41/104) Installing libxdmcp (1.1.5-r1) (42/104) Installing libxcb (1.17.0-r0) (43/104) Installing py3-pillow (11.1.0-r0) (44/104) Installing py3-pillow-pyc (11.1.0-r0) (45/104) Installing py3-matplotlib-pyc (3.9.3-r0) (46/104) Installing py3-numpy-pyc (2.2.4-r0) (47/104) Installing python3-pyc (3.12.10-r0) (48/104) Installing py3-numpy (2.2.4-r0) (49/104) Installing py3-numpy-tests (2.2.4-r0) (50/104) Installing py3-contourpy (1.3.1-r0) (51/104) Installing qhull (2020.2-r3) (52/104) Installing py3-matplotlib (3.9.3-r0) (53/104) Installing py3-tz (2025.2-r0) (54/104) Installing py3-tz-pyc (2025.2-r0) (55/104) Installing py3-attrs (25.3.0-r0) (56/104) Installing py3-attrs-pyc (25.3.0-r0) (57/104) Installing py3-tzdata (2025.2-r0) (58/104) Installing py3-tzdata-pyc (2025.2-r0) (59/104) Installing py3-pandas (2.2.3-r0) (60/104) Installing py3-pandas-pyc (2.2.3-r0) (61/104) Installing yaml (0.2.5-r2) (62/104) Installing py3-yaml (6.0.2-r0) (63/104) Installing py3-yaml-pyc (6.0.2-r0) (64/104) Installing py3-certifi (2024.12.14-r0) (65/104) Installing py3-certifi-pyc (2024.12.14-r0) (66/104) Installing py3-charset-normalizer (3.4.1-r0) (67/104) Installing py3-charset-normalizer-pyc (3.4.1-r0) (68/104) Installing py3-idna (3.10-r0) (69/104) Installing py3-idna-pyc (3.10-r0) (70/104) Installing py3-urllib3 (1.26.20-r0) (71/104) Installing py3-urllib3-pyc (1.26.20-r0) (72/104) Installing py3-requests (2.32.3-r0) (73/104) Installing py3-requests-pyc (2.32.3-r0) (74/104) Installing py3-typing-extensions (4.13.0-r0) (75/104) Installing py3-typing-extensions-pyc (4.13.0-r0) (76/104) Installing py3-setuptools (77.0.3-r0) (77/104) Installing py3-setuptools-pyc (77.0.3-r0) (78/104) Installing py3-installer (0.7.0-r2) (79/104) Installing py3-installer-pyc (0.7.0-r2) (80/104) Installing py3-gpep517 (16-r0) (81/104) Installing py3-gpep517-pyc (16-r0) (82/104) Installing py3-editables (0.5-r2) (83/104) Installing py3-editables-pyc (0.5-r2) (84/104) Installing py3-pathspec (0.12.1-r2) (85/104) Installing py3-pathspec-pyc (0.12.1-r2) (86/104) Installing py3-pluggy (1.5.0-r0) (87/104) Installing py3-pluggy-pyc (1.5.0-r0) (88/104) Installing py3-trove-classifiers (2025.1.15.22-r0) (89/104) Installing py3-trove-classifiers-pyc (2025.1.15.22-r0) (90/104) Installing py3-hatchling (1.27.0-r0) (91/104) Installing py3-hatchling-pyc (1.27.0-r0) (92/104) Installing py3-wheel (0.43.0-r0) (93/104) Installing py3-wheel-pyc (0.43.0-r0) (94/104) Installing py3-execnet (2.1.1-r0) (95/104) Installing py3-execnet-pyc (2.1.1-r0) (96/104) Installing py3-iniconfig (2.1.0-r0) (97/104) Installing py3-iniconfig-pyc (2.1.0-r0) (98/104) Installing py3-py (1.11.0-r4) (99/104) Installing py3-py-pyc (1.11.0-r4) (100/104) Installing py3-pytest (8.3.5-r0) (101/104) Installing py3-pytest-pyc (8.3.5-r0) (102/104) Installing py3-pytest-xdist (3.6.1-r0) (103/104) Installing py3-pytest-xdist-pyc (3.6.1-r0) (104/104) Installing .makedepends-py3-bioframe (20250410.133336) Executing busybox-1.37.0-r15.trigger OK: 532 MiB in 214 packages >>> py3-bioframe: Cleaning up srcdir >>> py3-bioframe: Cleaning up pkgdir >>> py3-bioframe: Cleaning up tmpdir >>> py3-bioframe: Fetching https://distfiles.alpinelinux.org/distfiles/edge/bioframe-0.8.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 curl: (22) The requested URL returned error: 404 >>> py3-bioframe: Fetching https://github.com/open2c/bioframe/archive/v0.8.0/bioframe-0.8.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 952k 0 952k 0 0 1311k 0 --:--:-- --:--:-- --:--:-- 2499k >>> py3-bioframe: Fetching https://distfiles.alpinelinux.org/distfiles/edge/bioframe-0.8.0.tar.gz >>> py3-bioframe: Checking sha512sums... bioframe-0.8.0.tar.gz: OK >>> py3-bioframe: Unpacking /var/cache/distfiles/edge/bioframe-0.8.0.tar.gz... 2025-04-10 13:33:44,053 gpep517 INFO Building wheel via backend hatchling.build 2025-04-10 13:33:44,545 gpep517 INFO The backend produced .dist/bioframe-0.8.0-py3-none-any.whl bioframe-0.8.0-py3-none-any.whl ============================= test session starts ============================== platform linux -- Python 3.12.10, pytest-8.3.5, pluggy-1.5.0 rootdir: /home/buildozer/aports/community/py3-bioframe/src/bioframe-0.8.0 configfile: pyproject.toml testpaths: tests plugins: xdist-3.6.1 created: 64/64 workers 64 workers [70 items] s.........s.s......................................................... [100%] =========================== short test summary info ============================ SKIPPED [1] tests/test_extras.py:85: could not import 'Bio': No module named 'Bio' SKIPPED [1] tests/test_extras.py:129: could not import 'pysam': No module named 'pysam' SKIPPED [1] tests/test_extras.py:97: could not import 'pysam': No module named 'pysam' ======================== 67 passed, 3 skipped in 53.11s ======================== /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-ef229d3c-7cde-428d-bded-f28c8f7a9fdf/popen-gw53/test_discovery_via_path_in_non0 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-ef229d3c-7cde-428d-bded-f28c8f7a9fdf/popen-gw53/test_discovery_via_path_in_non0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-ef229d3c-7cde-428d-bded-f28c8f7a9fdf/popen-gw53 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-ef229d3c-7cde-428d-bded-f28c8f7a9fdf/popen-gw53' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-ef229d3c-7cde-428d-bded-f28c8f7a9fdf : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-ef229d3c-7cde-428d-bded-f28c8f7a9fdf' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-a7b8f9e3-89db-497c-90b0-6b27159fecd2/popen-gw53/test_discovery_via_path_in_non0 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-a7b8f9e3-89db-497c-90b0-6b27159fecd2/popen-gw53/test_discovery_via_path_in_non0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-a7b8f9e3-89db-497c-90b0-6b27159fecd2/popen-gw53 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-a7b8f9e3-89db-497c-90b0-6b27159fecd2/popen-gw53' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-a7b8f9e3-89db-497c-90b0-6b27159fecd2 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-a7b8f9e3-89db-497c-90b0-6b27159fecd2' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-6cd8ae05-d35c-4d90-b9fe-f4db4ec5a0e5/popen-gw56/test_discovery_via_path_in_non0 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-6cd8ae05-d35c-4d90-b9fe-f4db4ec5a0e5/popen-gw56/test_discovery_via_path_in_non0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-6cd8ae05-d35c-4d90-b9fe-f4db4ec5a0e5/popen-gw56 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-6cd8ae05-d35c-4d90-b9fe-f4db4ec5a0e5/popen-gw56' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-6cd8ae05-d35c-4d90-b9fe-f4db4ec5a0e5 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-6cd8ae05-d35c-4d90-b9fe-f4db4ec5a0e5' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-30713f88-b359-4cf6-8a05-18d9c7731ff6/popen-gw0/test_discovery_via_path_in_non0 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-30713f88-b359-4cf6-8a05-18d9c7731ff6/popen-gw0/test_discovery_via_path_in_non0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-30713f88-b359-4cf6-8a05-18d9c7731ff6/popen-gw0 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-30713f88-b359-4cf6-8a05-18d9c7731ff6/popen-gw0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:96: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-30713f88-b359-4cf6-8a05-18d9c7731ff6 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-30713f88-b359-4cf6-8a05-18d9c7731ff6' warnings.warn( >>> py3-bioframe: Entering fakeroot... >>> py3-bioframe-doc*: Running split function doc... 'usr/share/doc' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-doc/usr/share/doc' >>> py3-bioframe-doc*: Preparing subpackage py3-bioframe-doc... >>> py3-bioframe-doc*: Running postcheck for py3-bioframe-doc >>> py3-bioframe-pyc*: Running split function pyc... 'usr/lib/python3.12/site-packages/bioframe/sandbox/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/sandbox/__pycache__' 'usr/lib/python3.12/site-packages/bioframe/io/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/io/__pycache__' 'usr/lib/python3.12/site-packages/bioframe/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/__pycache__' 'usr/lib/python3.12/site-packages/bioframe/core/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/core/__pycache__' >>> py3-bioframe-pyc*: Preparing subpackage py3-bioframe-pyc... >>> py3-bioframe-pyc*: Running postcheck for py3-bioframe-pyc >>> py3-bioframe*: Running postcheck for py3-bioframe >>> py3-bioframe*: Preparing package py3-bioframe... >>> py3-bioframe-doc*: Tracing dependencies... >>> py3-bioframe-doc*: Package size: 7.7 KB >>> py3-bioframe-doc*: Compressing data... >>> py3-bioframe-doc*: Create checksum... >>> py3-bioframe-doc*: Create py3-bioframe-doc-0.8.0-r0.apk >>> py3-bioframe-pyc*: Tracing dependencies... py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools python3~3.12 >>> py3-bioframe-pyc*: Package size: 263.5 KB >>> py3-bioframe-pyc*: Compressing data... >>> py3-bioframe-pyc*: Create checksum... >>> py3-bioframe-pyc*: Create py3-bioframe-pyc-0.8.0-r0.apk >>> py3-bioframe*: Tracing dependencies... py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools python3~3.12 >>> py3-bioframe*: Package size: 238.5 KB >>> py3-bioframe*: Compressing data... >>> py3-bioframe*: Create checksum... >>> py3-bioframe*: Create py3-bioframe-0.8.0-r0.apk >>> py3-bioframe: Build complete at Thu, 10 Apr 2025 13:34:44 +0000 elapsed time 0h 1m 12s >>> py3-bioframe: Cleaning up srcdir >>> py3-bioframe: Cleaning up pkgdir >>> py3-bioframe: Uninstalling dependencies... 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