>>> py3-biopython: Building community/py3-biopython 1.82-r0 (using abuild 3.12.0-r1) started Wed, 03 Jan 2024 17:36:40 +0000 >>> py3-biopython: Checking sanity of /home/buildozer/aports/community/py3-biopython/APKBUILD... >>> py3-biopython: Analyzing dependencies... >>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev (1/30) Installing libquadmath (13.2.1_git20231014-r0) (2/30) Installing libgfortran (13.2.1_git20231014-r0) (3/30) Installing openblas (0.3.25-r0) (4/30) Installing libffi (3.4.4-r3) (5/30) Installing gdbm (1.23-r1) (6/30) Installing mpdecimal (2.5.1-r2) (7/30) Installing libpanelw (6.4_p20231125-r0) (8/30) Installing readline (8.2.7-r0) (9/30) Installing sqlite-libs (3.44.2-r0) (10/30) Installing python3 (3.11.6-r1) (11/30) Installing python3-pycache-pyc0 (3.11.6-r1) (12/30) Installing pyc (3.11.6-r1) (13/30) Installing py3-numpy-pyc (1.25.2-r0) (14/30) Installing python3-pyc (3.11.6-r1) (15/30) Installing py3-numpy (1.25.2-r0) (16/30) Installing py3-installer (0.7.0-r1) (17/30) Installing py3-installer-pyc (0.7.0-r1) (18/30) Installing py3-gpep517 (15-r1) (19/30) Installing py3-gpep517-pyc (15-r1) (20/30) Installing py3-parsing (3.1.1-r0) (21/30) Installing py3-parsing-pyc (3.1.1-r0) (22/30) Installing py3-packaging (23.2-r0) (23/30) Installing py3-packaging-pyc (23.2-r0) (24/30) Installing py3-setuptools (68.2.2-r0) (25/30) Installing py3-setuptools-pyc (68.2.2-r0) (26/30) Installing py3-wheel (0.42.0-r0) (27/30) Installing py3-wheel-pyc (0.42.0-r0) (28/30) Installing py3-numpy-dev (1.25.2-r0) (29/30) Installing python3-dev (3.11.6-r1) (30/30) Installing .makedepends-py3-biopython (20240103.173642) Executing busybox-1.36.1-r18.trigger OK: 530 MiB in 142 packages >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Cleaning up tmpdir >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.82.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 146 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 curl: (22) The requested URL returned error: 404 >>> py3-biopython: Fetching https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.82.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 75 18.5M 75 14.0M 0 0 47.1M 0 --:--:-- --:--:-- --:--:-- 47.1M 100 18.5M 100 18.5M 0 0 54.9M 0 --:--:-- --:--:-- --:--:-- 112M >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.82.tar.gz >>> py3-biopython: Checking sha512sums... biopython-1.82.tar.gz: OK >>> py3-biopython: Unpacking /var/cache/distfiles/edge/biopython-1.82.tar.gz... 2024-01-03 17:36:45,867 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__ 2024-01-03 17:36:45,921 root INFO running bdist_wheel 2024-01-03 17:36:45,948 root INFO running build 2024-01-03 17:36:45,948 root INFO running build_py 2024-01-03 17:36:45,952 root INFO creating build 2024-01-03 17:36:45,952 root INFO creating build/lib.linux-i686-cpython-311 2024-01-03 17:36:45,952 root INFO creating build/lib.linux-i686-cpython-311/Bio 2024-01-03 17:36:45,953 root INFO copying Bio/MarkovModel.py -> build/lib.linux-i686-cpython-311/Bio 2024-01-03 17:36:45,953 root INFO copying Bio/SeqFeature.py -> build/lib.linux-i686-cpython-311/Bio 2024-01-03 17:36:45,954 root INFO copying Bio/pairwise2.py -> build/lib.linux-i686-cpython-311/Bio 2024-01-03 17:36:45,954 root INFO copying Bio/Seq.py -> build/lib.linux-i686-cpython-311/Bio 2024-01-03 17:36:45,955 root INFO copying Bio/bgzf.py -> build/lib.linux-i686-cpython-311/Bio 2024-01-03 17:36:45,956 root INFO copying Bio/LogisticRegression.py -> build/lib.linux-i686-cpython-311/Bio 2024-01-03 17:36:45,956 root INFO copying Bio/MaxEntropy.py -> build/lib.linux-i686-cpython-311/Bio 2024-01-03 17:36:45,956 root INFO copying Bio/__init__.py -> build/lib.linux-i686-cpython-311/Bio 2024-01-03 17:36:45,957 root INFO copying Bio/File.py -> build/lib.linux-i686-cpython-311/Bio 2024-01-03 17:36:45,957 root INFO copying Bio/_utils.py -> build/lib.linux-i686-cpython-311/Bio 2024-01-03 17:36:45,957 root INFO copying Bio/NaiveBayes.py -> build/lib.linux-i686-cpython-311/Bio 2024-01-03 17:36:45,958 root INFO copying Bio/kNN.py -> build/lib.linux-i686-cpython-311/Bio 2024-01-03 17:36:45,958 root INFO copying Bio/SeqRecord.py -> build/lib.linux-i686-cpython-311/Bio 2024-01-03 17:36:45,959 root INFO creating build/lib.linux-i686-cpython-311/Bio/Affy 2024-01-03 17:36:45,959 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Affy 2024-01-03 17:36:45,960 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-i686-cpython-311/Bio/Affy 2024-01-03 17:36:45,961 root INFO creating build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,961 root INFO copying Bio/Align/hhr.py -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,961 root INFO copying Bio/Align/a2m.py -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,962 root INFO copying Bio/Align/chain.py -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,962 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,963 root INFO copying Bio/Align/fasta.py -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,963 root INFO copying Bio/Align/psl.py -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,964 root INFO copying Bio/Align/clustal.py -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,964 root INFO copying Bio/Align/emboss.py -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,964 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,965 root INFO copying Bio/Align/nexus.py -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,965 root INFO copying Bio/Align/tabular.py -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,966 root INFO copying Bio/Align/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,966 root INFO copying Bio/Align/msf.py -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,967 root INFO copying Bio/Align/phylip.py -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,967 root INFO copying Bio/Align/mauve.py -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,968 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,968 root INFO copying Bio/Align/analysis.py -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,968 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,969 root INFO copying Bio/Align/maf.py -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,969 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,969 root INFO copying Bio/Align/sam.py -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,970 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,970 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,970 root INFO copying Bio/Align/bed.py -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:45,971 root INFO creating build/lib.linux-i686-cpython-311/Bio/Align/Applications 2024-01-03 17:36:45,971 root INFO copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-i686-cpython-311/Bio/Align/Applications 2024-01-03 17:36:45,972 root INFO copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-i686-cpython-311/Bio/Align/Applications 2024-01-03 17:36:45,972 root INFO copying Bio/Align/Applications/_Prank.py -> build/lib.linux-i686-cpython-311/Bio/Align/Applications 2024-01-03 17:36:45,972 root INFO copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-i686-cpython-311/Bio/Align/Applications 2024-01-03 17:36:45,973 root INFO copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-i686-cpython-311/Bio/Align/Applications 2024-01-03 17:36:45,973 root INFO copying Bio/Align/Applications/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Align/Applications 2024-01-03 17:36:45,973 root INFO copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-i686-cpython-311/Bio/Align/Applications 2024-01-03 17:36:45,974 root INFO copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-i686-cpython-311/Bio/Align/Applications 2024-01-03 17:36:45,974 root INFO copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-i686-cpython-311/Bio/Align/Applications 2024-01-03 17:36:45,974 root INFO copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-i686-cpython-311/Bio/Align/Applications 2024-01-03 17:36:45,975 root INFO creating build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices 2024-01-03 17:36:45,975 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices 2024-01-03 17:36:45,975 root INFO creating build/lib.linux-i686-cpython-311/Bio/AlignIO 2024-01-03 17:36:45,976 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-i686-cpython-311/Bio/AlignIO 2024-01-03 17:36:45,976 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-i686-cpython-311/Bio/AlignIO 2024-01-03 17:36:45,976 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-i686-cpython-311/Bio/AlignIO 2024-01-03 17:36:45,977 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-i686-cpython-311/Bio/AlignIO 2024-01-03 17:36:45,977 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-i686-cpython-311/Bio/AlignIO 2024-01-03 17:36:45,977 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-i686-cpython-311/Bio/AlignIO 2024-01-03 17:36:45,978 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-i686-cpython-311/Bio/AlignIO 2024-01-03 17:36:45,978 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-i686-cpython-311/Bio/AlignIO 2024-01-03 17:36:45,978 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-i686-cpython-311/Bio/AlignIO 2024-01-03 17:36:45,979 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-i686-cpython-311/Bio/AlignIO 2024-01-03 17:36:45,979 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-i686-cpython-311/Bio/AlignIO 2024-01-03 17:36:45,980 root INFO creating build/lib.linux-i686-cpython-311/Bio/Alphabet 2024-01-03 17:36:45,980 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Alphabet 2024-01-03 17:36:45,980 root INFO creating build/lib.linux-i686-cpython-311/Bio/Application 2024-01-03 17:36:45,980 root INFO copying Bio/Application/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Application 2024-01-03 17:36:45,981 root INFO creating build/lib.linux-i686-cpython-311/Bio/Blast 2024-01-03 17:36:45,981 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-i686-cpython-311/Bio/Blast 2024-01-03 17:36:45,982 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Blast 2024-01-03 17:36:45,982 root INFO copying Bio/Blast/Applications.py -> build/lib.linux-i686-cpython-311/Bio/Blast 2024-01-03 17:36:45,982 root INFO copying Bio/Blast/Record.py -> build/lib.linux-i686-cpython-311/Bio/Blast 2024-01-03 17:36:45,983 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-i686-cpython-311/Bio/Blast 2024-01-03 17:36:45,983 root INFO creating build/lib.linux-i686-cpython-311/Bio/CAPS 2024-01-03 17:36:45,983 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-i686-cpython-311/Bio/CAPS 2024-01-03 17:36:45,984 root INFO creating build/lib.linux-i686-cpython-311/Bio/Cluster 2024-01-03 17:36:45,984 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Cluster 2024-01-03 17:36:45,984 root INFO creating build/lib.linux-i686-cpython-311/Bio/codonalign 2024-01-03 17:36:45,985 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-i686-cpython-311/Bio/codonalign 2024-01-03 17:36:45,985 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-i686-cpython-311/Bio/codonalign 2024-01-03 17:36:45,985 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-i686-cpython-311/Bio/codonalign 2024-01-03 17:36:45,986 root INFO creating build/lib.linux-i686-cpython-311/Bio/Compass 2024-01-03 17:36:45,986 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Compass 2024-01-03 17:36:45,986 root INFO creating build/lib.linux-i686-cpython-311/Bio/Data 2024-01-03 17:36:45,987 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-i686-cpython-311/Bio/Data 2024-01-03 17:36:45,987 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-i686-cpython-311/Bio/Data 2024-01-03 17:36:45,987 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-i686-cpython-311/Bio/Data 2024-01-03 17:36:45,988 root INFO copying Bio/Data/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Data 2024-01-03 17:36:45,988 root INFO creating build/lib.linux-i686-cpython-311/Bio/Emboss 2024-01-03 17:36:45,988 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-i686-cpython-311/Bio/Emboss 2024-01-03 17:36:45,989 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Emboss 2024-01-03 17:36:45,989 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-i686-cpython-311/Bio/Emboss 2024-01-03 17:36:45,989 root INFO copying Bio/Emboss/Applications.py -> build/lib.linux-i686-cpython-311/Bio/Emboss 2024-01-03 17:36:45,990 root INFO creating build/lib.linux-i686-cpython-311/Bio/Entrez 2024-01-03 17:36:45,990 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Entrez 2024-01-03 17:36:45,990 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-i686-cpython-311/Bio/Entrez 2024-01-03 17:36:45,991 root INFO creating build/lib.linux-i686-cpython-311/Bio/ExPASy 2024-01-03 17:36:45,991 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-i686-cpython-311/Bio/ExPASy 2024-01-03 17:36:45,992 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-i686-cpython-311/Bio/ExPASy 2024-01-03 17:36:45,992 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-i686-cpython-311/Bio/ExPASy 2024-01-03 17:36:45,992 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-i686-cpython-311/Bio/ExPASy 2024-01-03 17:36:45,993 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-i686-cpython-311/Bio/ExPASy 2024-01-03 17:36:45,993 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-i686-cpython-311/Bio/ExPASy 2024-01-03 17:36:45,993 root INFO creating build/lib.linux-i686-cpython-311/Bio/GenBank 2024-01-03 17:36:45,994 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-i686-cpython-311/Bio/GenBank 2024-01-03 17:36:45,994 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-i686-cpython-311/Bio/GenBank 2024-01-03 17:36:45,994 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-i686-cpython-311/Bio/GenBank 2024-01-03 17:36:45,995 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-i686-cpython-311/Bio/GenBank 2024-01-03 17:36:45,995 root INFO creating build/lib.linux-i686-cpython-311/Bio/Geo 2024-01-03 17:36:45,996 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Geo 2024-01-03 17:36:45,996 root INFO copying Bio/Geo/Record.py -> build/lib.linux-i686-cpython-311/Bio/Geo 2024-01-03 17:36:45,996 root INFO creating build/lib.linux-i686-cpython-311/Bio/Graphics 2024-01-03 17:36:45,997 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-i686-cpython-311/Bio/Graphics 2024-01-03 17:36:45,997 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-i686-cpython-311/Bio/Graphics 2024-01-03 17:36:45,997 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Graphics 2024-01-03 17:36:45,998 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-i686-cpython-311/Bio/Graphics 2024-01-03 17:36:45,998 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-i686-cpython-311/Bio/Graphics 2024-01-03 17:36:45,998 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-i686-cpython-311/Bio/Graphics 2024-01-03 17:36:45,999 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-i686-cpython-311/Bio/Graphics 2024-01-03 17:36:46,000 root INFO creating build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:36:46,000 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:36:46,000 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:36:46,001 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:36:46,001 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:36:46,001 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:36:46,002 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:36:46,002 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:36:46,002 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:36:46,003 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:36:46,003 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:36:46,004 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:36:46,004 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram 2024-01-03 17:36:46,004 root INFO creating build/lib.linux-i686-cpython-311/Bio/HMM 2024-01-03 17:36:46,005 root INFO copying Bio/HMM/Trainer.py -> build/lib.linux-i686-cpython-311/Bio/HMM 2024-01-03 17:36:46,005 root INFO copying Bio/HMM/MarkovModel.py -> build/lib.linux-i686-cpython-311/Bio/HMM 2024-01-03 17:36:46,005 root INFO copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-i686-cpython-311/Bio/HMM 2024-01-03 17:36:46,006 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-i686-cpython-311/Bio/HMM 2024-01-03 17:36:46,006 root INFO copying Bio/HMM/Utilities.py -> build/lib.linux-i686-cpython-311/Bio/HMM 2024-01-03 17:36:46,007 root INFO creating build/lib.linux-i686-cpython-311/Bio/KEGG 2024-01-03 17:36:46,007 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-i686-cpython-311/Bio/KEGG 2024-01-03 17:36:46,007 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-i686-cpython-311/Bio/KEGG 2024-01-03 17:36:46,008 root INFO creating build/lib.linux-i686-cpython-311/Bio/KEGG/Compound 2024-01-03 17:36:46,008 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-i686-cpython-311/Bio/KEGG/Compound 2024-01-03 17:36:46,008 root INFO creating build/lib.linux-i686-cpython-311/Bio/KEGG/Enzyme 2024-01-03 17:36:46,009 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-i686-cpython-311/Bio/KEGG/Enzyme 2024-01-03 17:36:46,009 root INFO creating build/lib.linux-i686-cpython-311/Bio/KEGG/Gene 2024-01-03 17:36:46,009 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-i686-cpython-311/Bio/KEGG/Gene 2024-01-03 17:36:46,010 root INFO creating build/lib.linux-i686-cpython-311/Bio/KEGG/Map 2024-01-03 17:36:46,010 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-i686-cpython-311/Bio/KEGG/Map 2024-01-03 17:36:46,011 root INFO creating build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,011 root INFO creating build/lib.linux-i686-cpython-311/Bio/PDB/mmtf 2024-01-03 17:36:46,011 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-i686-cpython-311/Bio/PDB/mmtf 2024-01-03 17:36:46,011 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-i686-cpython-311/Bio/PDB/mmtf 2024-01-03 17:36:46,012 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-i686-cpython-311/Bio/PDB/mmtf 2024-01-03 17:36:46,012 root INFO creating build/lib.linux-i686-cpython-311/Bio/KEGG/KGML 2024-01-03 17:36:46,012 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-i686-cpython-311/Bio/KEGG/KGML 2024-01-03 17:36:46,013 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-i686-cpython-311/Bio/KEGG/KGML 2024-01-03 17:36:46,013 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-i686-cpython-311/Bio/KEGG/KGML 2024-01-03 17:36:46,014 root INFO creating build/lib.linux-i686-cpython-311/Bio/Medline 2024-01-03 17:36:46,014 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Medline 2024-01-03 17:36:46,015 root INFO creating build/lib.linux-i686-cpython-311/Bio/motifs 2024-01-03 17:36:46,015 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-i686-cpython-311/Bio/motifs 2024-01-03 17:36:46,015 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-i686-cpython-311/Bio/motifs 2024-01-03 17:36:46,016 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-i686-cpython-311/Bio/motifs 2024-01-03 17:36:46,016 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-i686-cpython-311/Bio/motifs 2024-01-03 17:36:46,016 root INFO copying Bio/motifs/xms.py -> build/lib.linux-i686-cpython-311/Bio/motifs 2024-01-03 17:36:46,017 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-i686-cpython-311/Bio/motifs 2024-01-03 17:36:46,017 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-i686-cpython-311/Bio/motifs 2024-01-03 17:36:46,017 root INFO copying Bio/motifs/mast.py -> build/lib.linux-i686-cpython-311/Bio/motifs 2024-01-03 17:36:46,018 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-i686-cpython-311/Bio/motifs 2024-01-03 17:36:46,018 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-i686-cpython-311/Bio/motifs 2024-01-03 17:36:46,018 root INFO copying Bio/motifs/meme.py -> build/lib.linux-i686-cpython-311/Bio/motifs 2024-01-03 17:36:46,019 root INFO creating build/lib.linux-i686-cpython-311/Bio/motifs/applications 2024-01-03 17:36:46,019 root INFO copying Bio/motifs/applications/__init__.py -> build/lib.linux-i686-cpython-311/Bio/motifs/applications 2024-01-03 17:36:46,019 root INFO copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-i686-cpython-311/Bio/motifs/applications 2024-01-03 17:36:46,020 root INFO creating build/lib.linux-i686-cpython-311/Bio/motifs/jaspar 2024-01-03 17:36:46,020 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-i686-cpython-311/Bio/motifs/jaspar 2024-01-03 17:36:46,021 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-i686-cpython-311/Bio/motifs/jaspar 2024-01-03 17:36:46,021 root INFO creating build/lib.linux-i686-cpython-311/Bio/Nexus 2024-01-03 17:36:46,021 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-i686-cpython-311/Bio/Nexus 2024-01-03 17:36:46,022 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-i686-cpython-311/Bio/Nexus 2024-01-03 17:36:46,022 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Nexus 2024-01-03 17:36:46,023 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-i686-cpython-311/Bio/Nexus 2024-01-03 17:36:46,023 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-i686-cpython-311/Bio/Nexus 2024-01-03 17:36:46,024 root INFO creating build/lib.linux-i686-cpython-311/Bio/NMR 2024-01-03 17:36:46,024 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-i686-cpython-311/Bio/NMR 2024-01-03 17:36:46,024 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-i686-cpython-311/Bio/NMR 2024-01-03 17:36:46,024 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-i686-cpython-311/Bio/NMR 2024-01-03 17:36:46,025 root INFO creating build/lib.linux-i686-cpython-311/Bio/Pathway 2024-01-03 17:36:46,025 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Pathway 2024-01-03 17:36:46,026 root INFO creating build/lib.linux-i686-cpython-311/Bio/Pathway/Rep 2024-01-03 17:36:46,026 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-i686-cpython-311/Bio/Pathway/Rep 2024-01-03 17:36:46,026 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Pathway/Rep 2024-01-03 17:36:46,027 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-i686-cpython-311/Bio/Pathway/Rep 2024-01-03 17:36:46,028 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,028 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,029 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,029 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,030 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,030 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,030 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,031 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,031 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,032 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,032 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,032 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,033 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,033 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,033 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,034 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,034 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,035 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,035 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,035 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,036 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,036 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,036 root INFO copying Bio/PDB/Model.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,037 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,037 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,037 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,038 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,038 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,038 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,039 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,039 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,039 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,040 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,040 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,040 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,041 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,041 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,042 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,042 root INFO creating build/lib.linux-i686-cpython-311/Bio/phenotype 2024-01-03 17:36:46,042 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-i686-cpython-311/Bio/phenotype 2024-01-03 17:36:46,043 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-i686-cpython-311/Bio/phenotype 2024-01-03 17:36:46,043 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-i686-cpython-311/Bio/phenotype 2024-01-03 17:36:46,044 root INFO creating build/lib.linux-i686-cpython-311/Bio/PopGen 2024-01-03 17:36:46,044 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-i686-cpython-311/Bio/PopGen 2024-01-03 17:36:46,044 root INFO creating build/lib.linux-i686-cpython-311/Bio/PopGen/GenePop 2024-01-03 17:36:46,045 root INFO copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-i686-cpython-311/Bio/PopGen/GenePop 2024-01-03 17:36:46,045 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-i686-cpython-311/Bio/PopGen/GenePop 2024-01-03 17:36:46,046 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-i686-cpython-311/Bio/PopGen/GenePop 2024-01-03 17:36:46,046 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-i686-cpython-311/Bio/PopGen/GenePop 2024-01-03 17:36:46,046 root INFO copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-i686-cpython-311/Bio/PopGen/GenePop 2024-01-03 17:36:46,047 root INFO creating build/lib.linux-i686-cpython-311/Bio/Restriction 2024-01-03 17:36:46,047 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-i686-cpython-311/Bio/Restriction 2024-01-03 17:36:46,047 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-i686-cpython-311/Bio/Restriction 2024-01-03 17:36:46,048 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-i686-cpython-311/Bio/Restriction 2024-01-03 17:36:46,049 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Restriction 2024-01-03 17:36:46,050 root INFO creating build/lib.linux-i686-cpython-311/Bio/SCOP 2024-01-03 17:36:46,050 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-i686-cpython-311/Bio/SCOP 2024-01-03 17:36:46,050 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-i686-cpython-311/Bio/SCOP 2024-01-03 17:36:46,051 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-i686-cpython-311/Bio/SCOP 2024-01-03 17:36:46,051 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-i686-cpython-311/Bio/SCOP 2024-01-03 17:36:46,052 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-i686-cpython-311/Bio/SCOP 2024-01-03 17:36:46,052 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-i686-cpython-311/Bio/SCOP 2024-01-03 17:36:46,052 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-i686-cpython-311/Bio/SCOP 2024-01-03 17:36:46,053 root INFO creating build/lib.linux-i686-cpython-311/Bio/SearchIO 2024-01-03 17:36:46,053 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO 2024-01-03 17:36:46,053 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO 2024-01-03 17:36:46,054 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO 2024-01-03 17:36:46,054 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO 2024-01-03 17:36:46,055 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO 2024-01-03 17:36:46,055 root INFO creating build/lib.linux-i686-cpython-311/Bio/SearchIO/_model 2024-01-03 17:36:46,055 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO/_model 2024-01-03 17:36:46,056 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO/_model 2024-01-03 17:36:46,056 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO/_model 2024-01-03 17:36:46,056 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO/_model 2024-01-03 17:36:46,057 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO/_model 2024-01-03 17:36:46,057 root INFO creating build/lib.linux-i686-cpython-311/Bio/SearchIO/BlastIO 2024-01-03 17:36:46,058 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO/BlastIO 2024-01-03 17:36:46,058 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO/BlastIO 2024-01-03 17:36:46,059 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO/BlastIO 2024-01-03 17:36:46,059 root INFO creating build/lib.linux-i686-cpython-311/Bio/SearchIO/HHsuiteIO 2024-01-03 17:36:46,059 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO/HHsuiteIO 2024-01-03 17:36:46,060 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO/HHsuiteIO 2024-01-03 17:36:46,060 root INFO creating build/lib.linux-i686-cpython-311/Bio/SearchIO/HmmerIO 2024-01-03 17:36:46,060 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO/HmmerIO 2024-01-03 17:36:46,061 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO/HmmerIO 2024-01-03 17:36:46,061 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO/HmmerIO 2024-01-03 17:36:46,062 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO/HmmerIO 2024-01-03 17:36:46,062 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO/HmmerIO 2024-01-03 17:36:46,062 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO/HmmerIO 2024-01-03 17:36:46,063 root INFO creating build/lib.linux-i686-cpython-311/Bio/SearchIO/ExonerateIO 2024-01-03 17:36:46,063 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO/ExonerateIO 2024-01-03 17:36:46,064 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO/ExonerateIO 2024-01-03 17:36:46,064 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO/ExonerateIO 2024-01-03 17:36:46,064 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO/ExonerateIO 2024-01-03 17:36:46,065 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO/ExonerateIO 2024-01-03 17:36:46,065 root INFO creating build/lib.linux-i686-cpython-311/Bio/SearchIO/InterproscanIO 2024-01-03 17:36:46,065 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO/InterproscanIO 2024-01-03 17:36:46,066 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-i686-cpython-311/Bio/SearchIO/InterproscanIO 2024-01-03 17:36:46,067 root INFO creating build/lib.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:36:46,067 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:36:46,067 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:36:46,068 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:36:46,068 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:36:46,069 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:36:46,069 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:36:46,069 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:36:46,070 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:36:46,070 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:36:46,071 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:36:46,071 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:36:46,071 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:36:46,072 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:36:46,072 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:36:46,072 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:36:46,073 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:36:46,073 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:36:46,073 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:36:46,074 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:36:46,074 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:36:46,075 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:36:46,075 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:36:46,076 root INFO creating build/lib.linux-i686-cpython-311/Bio/SeqUtils 2024-01-03 17:36:46,076 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-i686-cpython-311/Bio/SeqUtils 2024-01-03 17:36:46,076 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-i686-cpython-311/Bio/SeqUtils 2024-01-03 17:36:46,077 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-i686-cpython-311/Bio/SeqUtils 2024-01-03 17:36:46,077 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-i686-cpython-311/Bio/SeqUtils 2024-01-03 17:36:46,077 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-i686-cpython-311/Bio/SeqUtils 2024-01-03 17:36:46,078 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-i686-cpython-311/Bio/SeqUtils 2024-01-03 17:36:46,078 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-i686-cpython-311/Bio/SeqUtils 2024-01-03 17:36:46,079 root INFO creating build/lib.linux-i686-cpython-311/Bio/Sequencing 2024-01-03 17:36:46,079 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-i686-cpython-311/Bio/Sequencing 2024-01-03 17:36:46,079 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Sequencing 2024-01-03 17:36:46,079 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-i686-cpython-311/Bio/Sequencing 2024-01-03 17:36:46,080 root INFO creating build/lib.linux-i686-cpython-311/Bio/Sequencing/Applications 2024-01-03 17:36:46,080 root INFO copying Bio/Sequencing/Applications/_samtools.py -> build/lib.linux-i686-cpython-311/Bio/Sequencing/Applications 2024-01-03 17:36:46,081 root INFO copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Sequencing/Applications 2024-01-03 17:36:46,081 root INFO copying Bio/Sequencing/Applications/_bwa.py -> build/lib.linux-i686-cpython-311/Bio/Sequencing/Applications 2024-01-03 17:36:46,081 root INFO copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-i686-cpython-311/Bio/Sequencing/Applications 2024-01-03 17:36:46,082 root INFO creating build/lib.linux-i686-cpython-311/Bio/SVDSuperimposer 2024-01-03 17:36:46,082 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-i686-cpython-311/Bio/SVDSuperimposer 2024-01-03 17:36:46,083 root INFO creating build/lib.linux-i686-cpython-311/Bio/SwissProt 2024-01-03 17:36:46,083 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-i686-cpython-311/Bio/SwissProt 2024-01-03 17:36:46,083 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-i686-cpython-311/Bio/SwissProt 2024-01-03 17:36:46,084 root INFO creating build/lib.linux-i686-cpython-311/Bio/TogoWS 2024-01-03 17:36:46,084 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-i686-cpython-311/Bio/TogoWS 2024-01-03 17:36:46,085 root INFO creating build/lib.linux-i686-cpython-311/Bio/Phylo 2024-01-03 17:36:46,085 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-i686-cpython-311/Bio/Phylo 2024-01-03 17:36:46,086 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-i686-cpython-311/Bio/Phylo 2024-01-03 17:36:46,086 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-i686-cpython-311/Bio/Phylo 2024-01-03 17:36:46,086 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-i686-cpython-311/Bio/Phylo 2024-01-03 17:36:46,087 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-i686-cpython-311/Bio/Phylo 2024-01-03 17:36:46,087 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-i686-cpython-311/Bio/Phylo 2024-01-03 17:36:46,087 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-i686-cpython-311/Bio/Phylo 2024-01-03 17:36:46,088 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-i686-cpython-311/Bio/Phylo 2024-01-03 17:36:46,088 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Phylo 2024-01-03 17:36:46,088 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-i686-cpython-311/Bio/Phylo 2024-01-03 17:36:46,089 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-i686-cpython-311/Bio/Phylo 2024-01-03 17:36:46,089 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-i686-cpython-311/Bio/Phylo 2024-01-03 17:36:46,089 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-i686-cpython-311/Bio/Phylo 2024-01-03 17:36:46,090 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-i686-cpython-311/Bio/Phylo 2024-01-03 17:36:46,090 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-i686-cpython-311/Bio/Phylo 2024-01-03 17:36:46,090 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-i686-cpython-311/Bio/Phylo 2024-01-03 17:36:46,091 root INFO creating build/lib.linux-i686-cpython-311/Bio/Phylo/Applications 2024-01-03 17:36:46,091 root INFO copying Bio/Phylo/Applications/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Phylo/Applications 2024-01-03 17:36:46,091 root INFO copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.linux-i686-cpython-311/Bio/Phylo/Applications 2024-01-03 17:36:46,092 root INFO copying Bio/Phylo/Applications/_Phyml.py -> build/lib.linux-i686-cpython-311/Bio/Phylo/Applications 2024-01-03 17:36:46,092 root INFO copying Bio/Phylo/Applications/_Raxml.py -> build/lib.linux-i686-cpython-311/Bio/Phylo/Applications 2024-01-03 17:36:46,093 root INFO creating build/lib.linux-i686-cpython-311/Bio/Phylo/PAML 2024-01-03 17:36:46,093 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-i686-cpython-311/Bio/Phylo/PAML 2024-01-03 17:36:46,093 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-i686-cpython-311/Bio/Phylo/PAML 2024-01-03 17:36:46,093 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-i686-cpython-311/Bio/Phylo/PAML 2024-01-03 17:36:46,094 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-i686-cpython-311/Bio/Phylo/PAML 2024-01-03 17:36:46,094 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-i686-cpython-311/Bio/Phylo/PAML 2024-01-03 17:36:46,095 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-i686-cpython-311/Bio/Phylo/PAML 2024-01-03 17:36:46,095 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-i686-cpython-311/Bio/Phylo/PAML 2024-01-03 17:36:46,095 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-i686-cpython-311/Bio/Phylo/PAML 2024-01-03 17:36:46,096 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-i686-cpython-311/Bio/Phylo/PAML 2024-01-03 17:36:46,096 root INFO creating build/lib.linux-i686-cpython-311/Bio/UniGene 2024-01-03 17:36:46,096 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-i686-cpython-311/Bio/UniGene 2024-01-03 17:36:46,097 root INFO creating build/lib.linux-i686-cpython-311/Bio/UniProt 2024-01-03 17:36:46,097 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-i686-cpython-311/Bio/UniProt 2024-01-03 17:36:46,097 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-i686-cpython-311/Bio/UniProt 2024-01-03 17:36:46,098 root INFO creating build/lib.linux-i686-cpython-311/BioSQL 2024-01-03 17:36:46,098 root INFO copying BioSQL/__init__.py -> build/lib.linux-i686-cpython-311/BioSQL 2024-01-03 17:36:46,098 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-i686-cpython-311/BioSQL 2024-01-03 17:36:46,099 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-i686-cpython-311/BioSQL 2024-01-03 17:36:46,099 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-i686-cpython-311/BioSQL 2024-01-03 17:36:46,099 root INFO copying BioSQL/Loader.py -> build/lib.linux-i686-cpython-311/BioSQL 2024-01-03 17:36:46,100 root INFO running egg_info 2024-01-03 17:36:46,102 root INFO writing biopython.egg-info/PKG-INFO 2024-01-03 17:36:46,103 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt 2024-01-03 17:36:46,103 root INFO writing requirements to biopython.egg-info/requires.txt 2024-01-03 17:36:46,104 root INFO writing top-level names to biopython.egg-info/top_level.txt 2024-01-03 17:36:46,120 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt' 2024-01-03 17:36:46,144 root INFO reading manifest template 'MANIFEST.in' 2024-01-03 17:36:46,288 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' 2024-01-03 17:36:46,293 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-01-03 17:36:46,298 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution 2024-01-03 17:36:46,302 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution 2024-01-03 17:36:46,307 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution 2024-01-03 17:36:46,316 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' 2024-01-03 17:36:46,316 root INFO adding license file 'LICENSE' 2024-01-03 17:36:46,316 root INFO adding license file 'LICENSE.rst' 2024-01-03 17:36:46,369 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.DTDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.DTDs' to be distributed and are already explicitly excluding 'Bio.Entrez.DTDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.11/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.XSDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.XSDs' to be distributed and are already explicitly excluding 'Bio.Entrez.XSDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) 2024-01-03 17:36:46,415 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-i686-cpython-311/Bio 2024-01-03 17:36:46,415 root INFO copying Bio/py.typed -> build/lib.linux-i686-cpython-311/Bio 2024-01-03 17:36:46,416 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:46,416 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:46,417 root INFO creating build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,417 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,417 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,418 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,418 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,418 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,419 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,419 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,419 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,420 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,420 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,420 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,421 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,421 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,421 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,422 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,422 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,422 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,422 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,423 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,423 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,423 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,424 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,424 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,424 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,425 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,425 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,425 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,426 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,426 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,426 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data 2024-01-03 17:36:46,427 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-i686-cpython-311/Bio/Cluster 2024-01-03 17:36:46,427 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-i686-cpython-311/Bio/Cluster 2024-01-03 17:36:46,428 root INFO copying Bio/Cluster/clustermodule.c -> build/lib.linux-i686-cpython-311/Bio/Cluster 2024-01-03 17:36:46,428 root INFO creating build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,428 root INFO copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,429 root INFO copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,429 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,429 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,430 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,430 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,430 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,431 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,431 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,431 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,432 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,432 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,433 root INFO copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,433 root INFO copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,433 root INFO copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,433 root INFO copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,434 root INFO copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,434 root INFO copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,434 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,435 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,435 root INFO copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,435 root INFO copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,436 root INFO copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,436 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,437 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,437 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,437 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,438 root INFO copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,438 root INFO copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,439 root INFO copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,439 root INFO copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,439 root INFO copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,440 root INFO copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,441 root INFO copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,441 root INFO copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,442 root INFO copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,442 root INFO copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,442 root INFO copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,443 root INFO copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,443 root INFO copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,443 root INFO copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,444 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,444 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,445 root INFO copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,445 root INFO copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,445 root INFO copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,446 root INFO copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,446 root INFO copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,446 root INFO copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,447 root INFO copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,447 root INFO copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,448 root INFO copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,448 root INFO copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,448 root INFO copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,449 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,449 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,449 root INFO copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,450 root INFO copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,450 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,450 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,451 root INFO copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,451 root INFO copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,451 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,452 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,452 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,452 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,453 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,453 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,453 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,454 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,454 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,454 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,455 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,455 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,455 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,456 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,456 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,456 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,457 root INFO copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,457 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,457 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,458 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,458 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,458 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,459 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,459 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,460 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,460 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,460 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,460 root INFO copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,461 root INFO copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,461 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,461 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,462 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,462 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,462 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,463 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,463 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,463 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,464 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,464 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,464 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,465 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,465 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,465 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,466 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,466 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,466 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,467 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,467 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,467 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,468 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,468 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,468 root INFO copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,469 root INFO copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,469 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,469 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,470 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,470 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,470 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,471 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,471 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,471 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,472 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,472 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,472 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,473 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,473 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,473 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,474 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,474 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,474 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,474 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,475 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,475 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 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build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,478 root INFO copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,478 root INFO copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,479 root INFO copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,479 root INFO copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,479 root INFO copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,480 root INFO copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,480 root INFO copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,480 root INFO copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,481 root INFO copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,481 root INFO copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,481 root INFO copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,482 root INFO copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,482 root INFO copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,482 root INFO copying Bio/Entrez/DTDs/NCBI_all.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,483 root INFO copying Bio/Entrez/DTDs/NSE.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,483 root INFO copying Bio/Entrez/DTDs/NSE.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,483 root INFO copying Bio/Entrez/DTDs/OMSSA.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,484 root INFO copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,484 root INFO copying Bio/Entrez/DTDs/PDB_General.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,485 root INFO copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,485 root INFO copying Bio/Entrez/DTDs/PIR_General.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,485 root INFO copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,485 root INFO copying Bio/Entrez/DTDs/PRF_General.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,486 root INFO copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,486 root INFO copying Bio/Entrez/DTDs/SP_General.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,486 root INFO copying Bio/Entrez/DTDs/SP_General.mod.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,487 root INFO copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,487 root INFO copying Bio/Entrez/DTDs/archivearticle.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,487 root INFO copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,488 root INFO copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,488 root INFO copying Bio/Entrez/DTDs/archivecustom-models.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,489 root INFO copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,489 root INFO copying Bio/Entrez/DTDs/articlemeta.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,489 root INFO copying Bio/Entrez/DTDs/backmatter.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,490 root INFO copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,490 root INFO copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,490 root INFO copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,491 root INFO copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,491 root INFO copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,491 root INFO copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,492 root INFO copying Bio/Entrez/DTDs/chars.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,492 root INFO copying Bio/Entrez/DTDs/common.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,493 root INFO copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,493 root INFO copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,494 root INFO copying Bio/Entrez/DTDs/display.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,494 root INFO copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,494 root INFO copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,495 root INFO copying Bio/Entrez/DTDs/eLink_101123.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,495 root INFO copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,495 root INFO copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,496 root INFO copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,496 root INFO copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,496 root INFO copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,496 root INFO copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,497 root INFO copying Bio/Entrez/DTDs/elink.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,497 root INFO copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,497 root INFO copying Bio/Entrez/DTDs/epost.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,498 root INFO copying Bio/Entrez/DTDs/esearch.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,498 root INFO copying Bio/Entrez/DTDs/esummary-v1.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,498 root INFO copying Bio/Entrez/DTDs/esummary_gene.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,499 root INFO copying Bio/Entrez/DTDs/format.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,499 root INFO copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,499 root INFO copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,500 root INFO copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,500 root INFO copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,500 root INFO copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,501 root INFO copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,501 root INFO copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,501 root INFO copying Bio/Entrez/DTDs/isobox.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,502 root INFO copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,502 root INFO copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,502 root INFO copying Bio/Entrez/DTDs/isodia.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,503 root INFO copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,503 root INFO copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,503 root INFO copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,504 root INFO copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,504 root INFO copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,504 root INFO copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,505 root INFO copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,505 root INFO copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,505 root INFO copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,506 root INFO copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,506 root INFO copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,506 root INFO copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,507 root INFO copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,507 root INFO copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,508 root INFO copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,508 root INFO copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,508 root INFO copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,509 root INFO copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,509 root INFO copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,509 root INFO copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,510 root INFO copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,510 root INFO copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,511 root INFO copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,511 root INFO copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,511 root INFO copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,512 root INFO copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,512 root INFO copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,512 root INFO copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,513 root INFO copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,513 root INFO copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,513 root INFO copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,514 root INFO copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,514 root INFO copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,514 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,515 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,515 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,515 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,516 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,516 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,516 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,517 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,517 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,518 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,518 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,518 root INFO copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,519 root INFO copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,519 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,519 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,520 root INFO copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,520 root INFO copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,520 root INFO copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,521 root INFO copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,521 root INFO copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,521 root INFO copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,522 root INFO copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,522 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,522 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,523 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,523 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,523 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,524 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,524 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,524 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,525 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,525 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,525 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,526 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,526 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,526 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,527 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,527 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,527 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs 2024-01-03 17:36:46,528 root INFO creating build/lib.linux-i686-cpython-311/Bio/Entrez/XSDs 2024-01-03 17:36:46,528 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-i686-cpython-311/Bio/Entrez/XSDs 2024-01-03 17:36:46,528 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-i686-cpython-311/Bio/motifs 2024-01-03 17:36:46,529 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-i686-cpython-311/Bio/Nexus 2024-01-03 17:36:46,529 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,529 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:36:46,530 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:36:46,530 root INFO copying BioSQL/py.typed -> build/lib.linux-i686-cpython-311/BioSQL 2024-01-03 17:36:46,542 root INFO running build_ext 2024-01-03 17:36:46,544 root INFO building 'Bio.Align._codonaligner' extension 2024-01-03 17:36:46,545 root INFO creating build/temp.linux-i686-cpython-311 2024-01-03 17:36:46,545 root INFO creating build/temp.linux-i686-cpython-311/Bio 2024-01-03 17:36:46,545 root INFO creating build/temp.linux-i686-cpython-311/Bio/Align 2024-01-03 17:36:46,545 root INFO gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.11 -c Bio/Align/_codonaligner.c -o build/temp.linux-i686-cpython-311/Bio/Align/_codonaligner.o 2024-01-03 17:36:47,542 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-i686-cpython-311/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-i686-cpython-311/Bio/Align/_codonaligner.cpython-311-i386-linux-musl.so 2024-01-03 17:36:47,561 root INFO building 'Bio.Align._pairwisealigner' extension 2024-01-03 17:36:47,561 root INFO gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.11 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-i686-cpython-311/Bio/Align/_pairwisealigner.o Bio/Align/_pairwisealigner.c: In function 'Aligner_watermansmithbeyer_global_align_compare': Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6319:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6319 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6308:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6308 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_watermansmithbeyer_local_align_compare': Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6367:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6367 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6356:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6356 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_global_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6874:34: Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6341:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6341 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6330:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6330 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_local_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6880:34: Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6392:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6392 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6381:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6381 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-01-03 17:36:55,830 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-i686-cpython-311/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-i686-cpython-311/Bio/Align/_pairwisealigner.cpython-311-i386-linux-musl.so 2024-01-03 17:36:55,852 root INFO building 'Bio.cpairwise2' extension 2024-01-03 17:36:55,852 root INFO gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.11 -c Bio/cpairwise2module.c -o build/temp.linux-i686-cpython-311/Bio/cpairwise2module.o Bio/cpairwise2module.c: In function '_get_match_score': Bio/cpairwise2module.c:60:5: warning: 'PyEval_CallObjectWithKeywords' is deprecated [-Wdeprecated-declarations] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist))) | ^~ In file included from /usr/include/python3.11/Python.h:95, from Bio/cpairwise2module.c:16: /usr/include/python3.11/ceval.h:27:43: note: declared here 27 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-01-03 17:36:56,288 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-i686-cpython-311/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-i686-cpython-311/Bio/cpairwise2.cpython-311-i386-linux-musl.so 2024-01-03 17:36:56,310 root INFO building 'Bio.Nexus.cnexus' extension 2024-01-03 17:36:56,310 root INFO creating build/temp.linux-i686-cpython-311/Bio/Nexus 2024-01-03 17:36:56,310 root INFO gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.11 -c Bio/Nexus/cnexus.c -o build/temp.linux-i686-cpython-311/Bio/Nexus/cnexus.o 2024-01-03 17:36:56,527 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-i686-cpython-311/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-i686-cpython-311/Bio/Nexus/cnexus.cpython-311-i386-linux-musl.so 2024-01-03 17:36:56,546 root INFO building 'Bio.motifs._pwm' extension 2024-01-03 17:36:56,546 root INFO creating build/temp.linux-i686-cpython-311/Bio/motifs 2024-01-03 17:36:56,547 root INFO gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.11 -c Bio/motifs/_pwm.c -o build/temp.linux-i686-cpython-311/Bio/motifs/_pwm.o 2024-01-03 17:36:56,781 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-i686-cpython-311/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-i686-cpython-311/Bio/motifs/_pwm.cpython-311-i386-linux-musl.so 2024-01-03 17:36:56,796 root INFO building 'Bio.Cluster._cluster' extension 2024-01-03 17:36:56,796 root INFO creating build/temp.linux-i686-cpython-311/Bio/Cluster 2024-01-03 17:36:56,797 root INFO gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.11 -c Bio/Cluster/cluster.c -o build/temp.linux-i686-cpython-311/Bio/Cluster/cluster.o 2024-01-03 17:36:59,887 root INFO gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.11 -c Bio/Cluster/clustermodule.c -o build/temp.linux-i686-cpython-311/Bio/Cluster/clustermodule.o 2024-01-03 17:37:01,210 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-i686-cpython-311/Bio/Cluster/cluster.o build/temp.linux-i686-cpython-311/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-i686-cpython-311/Bio/Cluster/_cluster.cpython-311-i386-linux-musl.so 2024-01-03 17:37:01,236 root INFO building 'Bio.PDB.kdtrees' extension 2024-01-03 17:37:01,237 root INFO creating build/temp.linux-i686-cpython-311/Bio/PDB 2024-01-03 17:37:01,237 root INFO gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.11 -c Bio/PDB/kdtrees.c -o build/temp.linux-i686-cpython-311/Bio/PDB/kdtrees.o 2024-01-03 17:37:02,185 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-i686-cpython-311/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-i686-cpython-311/Bio/PDB/kdtrees.cpython-311-i386-linux-musl.so 2024-01-03 17:37:02,204 root INFO building 'Bio.PDB.ccealign' extension 2024-01-03 17:37:02,204 root INFO gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.11 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-i686-cpython-311/Bio/PDB/ccealignmodule.o 2024-01-03 17:37:02,889 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-i686-cpython-311/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-i686-cpython-311/Bio/PDB/ccealign.cpython-311-i386-linux-musl.so 2024-01-03 17:37:02,908 root INFO building 'Bio.SeqIO._twoBitIO' extension 2024-01-03 17:37:02,908 root INFO creating build/temp.linux-i686-cpython-311/Bio/SeqIO 2024-01-03 17:37:02,909 root INFO gcc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.11 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-i686-cpython-311/Bio/SeqIO/_twoBitIO.o 2024-01-03 17:37:03,322 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-i686-cpython-311/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-i686-cpython-311/Bio/SeqIO/_twoBitIO.cpython-311-i386-linux-musl.so 2024-01-03 17:37:03,346 wheel INFO installing to build/bdist.linux-i686/wheel 2024-01-03 17:37:03,346 root INFO running install 2024-01-03 17:37:03,360 root INFO running install_lib 2024-01-03 17:37:03,364 root INFO creating build/bdist.linux-i686 2024-01-03 17:37:03,364 root INFO creating build/bdist.linux-i686/wheel 2024-01-03 17:37:03,364 root INFO creating build/bdist.linux-i686/wheel/Bio 2024-01-03 17:37:03,365 root INFO copying build/lib.linux-i686-cpython-311/Bio/cpairwise2.cpython-311-i386-linux-musl.so -> build/bdist.linux-i686/wheel/Bio 2024-01-03 17:37:03,365 root INFO creating build/bdist.linux-i686/wheel/Bio/Compass 2024-01-03 17:37:03,365 root INFO copying build/lib.linux-i686-cpython-311/Bio/Compass/__init__.py -> build/bdist.linux-i686/wheel/Bio/Compass 2024-01-03 17:37:03,366 root INFO creating build/bdist.linux-i686/wheel/Bio/Sequencing 2024-01-03 17:37:03,366 root INFO copying build/lib.linux-i686-cpython-311/Bio/Sequencing/Ace.py -> build/bdist.linux-i686/wheel/Bio/Sequencing 2024-01-03 17:37:03,366 root INFO copying build/lib.linux-i686-cpython-311/Bio/Sequencing/__init__.py -> build/bdist.linux-i686/wheel/Bio/Sequencing 2024-01-03 17:37:03,367 root INFO creating build/bdist.linux-i686/wheel/Bio/Sequencing/Applications 2024-01-03 17:37:03,367 root INFO copying build/lib.linux-i686-cpython-311/Bio/Sequencing/Applications/_samtools.py -> build/bdist.linux-i686/wheel/Bio/Sequencing/Applications 2024-01-03 17:37:03,367 root INFO copying build/lib.linux-i686-cpython-311/Bio/Sequencing/Applications/__init__.py -> build/bdist.linux-i686/wheel/Bio/Sequencing/Applications 2024-01-03 17:37:03,368 root INFO copying build/lib.linux-i686-cpython-311/Bio/Sequencing/Applications/_bwa.py -> build/bdist.linux-i686/wheel/Bio/Sequencing/Applications 2024-01-03 17:37:03,368 root INFO copying build/lib.linux-i686-cpython-311/Bio/Sequencing/Applications/_Novoalign.py -> build/bdist.linux-i686/wheel/Bio/Sequencing/Applications 2024-01-03 17:37:03,370 root INFO copying build/lib.linux-i686-cpython-311/Bio/Sequencing/Phd.py -> build/bdist.linux-i686/wheel/Bio/Sequencing 2024-01-03 17:37:03,370 root INFO copying build/lib.linux-i686-cpython-311/Bio/MarkovModel.py -> build/bdist.linux-i686/wheel/Bio 2024-01-03 17:37:03,370 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqFeature.py -> build/bdist.linux-i686/wheel/Bio 2024-01-03 17:37:03,371 root INFO copying build/lib.linux-i686-cpython-311/Bio/pairwise2.py -> build/bdist.linux-i686/wheel/Bio 2024-01-03 17:37:03,371 root INFO creating build/bdist.linux-i686/wheel/Bio/SwissProt 2024-01-03 17:37:03,371 root INFO copying build/lib.linux-i686-cpython-311/Bio/SwissProt/KeyWList.py -> build/bdist.linux-i686/wheel/Bio/SwissProt 2024-01-03 17:37:03,372 root INFO copying build/lib.linux-i686-cpython-311/Bio/SwissProt/__init__.py -> build/bdist.linux-i686/wheel/Bio/SwissProt 2024-01-03 17:37:03,372 root INFO creating build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,372 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqIO/QualityIO.py -> build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,373 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,373 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqIO/_twoBitIO.cpython-311-i386-linux-musl.so -> build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,373 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,374 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,374 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,374 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqIO/PdbIO.py -> build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,375 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqIO/__init__.py -> build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,375 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqIO/PirIO.py -> build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,375 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,376 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqIO/SffIO.py -> build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,376 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqIO/GckIO.py -> build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,377 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqIO/NibIO.py -> build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,377 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqIO/AbiIO.py -> build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,377 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqIO/FastaIO.py -> build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,378 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,378 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqIO/TabIO.py -> build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,378 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqIO/IgIO.py -> build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,378 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,379 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqIO/AceIO.py -> build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,379 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqIO/SwissIO.py -> build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,379 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqIO/_index.py -> build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,380 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqIO/PhdIO.py -> build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,380 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqIO/Interfaces.py -> build/bdist.linux-i686/wheel/Bio/SeqIO 2024-01-03 17:37:03,380 root INFO copying build/lib.linux-i686-cpython-311/Bio/Seq.py -> build/bdist.linux-i686/wheel/Bio 2024-01-03 17:37:03,381 root INFO creating build/bdist.linux-i686/wheel/Bio/Data 2024-01-03 17:37:03,381 root INFO copying build/lib.linux-i686-cpython-311/Bio/Data/IUPACData.py -> build/bdist.linux-i686/wheel/Bio/Data 2024-01-03 17:37:03,382 root INFO copying build/lib.linux-i686-cpython-311/Bio/Data/CodonTable.py -> build/bdist.linux-i686/wheel/Bio/Data 2024-01-03 17:37:03,382 root INFO copying build/lib.linux-i686-cpython-311/Bio/Data/PDBData.py -> build/bdist.linux-i686/wheel/Bio/Data 2024-01-03 17:37:03,382 root INFO copying build/lib.linux-i686-cpython-311/Bio/Data/__init__.py -> build/bdist.linux-i686/wheel/Bio/Data 2024-01-03 17:37:03,383 root INFO copying build/lib.linux-i686-cpython-311/Bio/bgzf.py -> build/bdist.linux-i686/wheel/Bio 2024-01-03 17:37:03,383 root INFO creating build/bdist.linux-i686/wheel/Bio/UniProt 2024-01-03 17:37:03,383 root INFO copying build/lib.linux-i686-cpython-311/Bio/UniProt/__init__.py -> build/bdist.linux-i686/wheel/Bio/UniProt 2024-01-03 17:37:03,383 root INFO copying build/lib.linux-i686-cpython-311/Bio/UniProt/GOA.py -> build/bdist.linux-i686/wheel/Bio/UniProt 2024-01-03 17:37:03,384 root INFO creating build/bdist.linux-i686/wheel/Bio/motifs 2024-01-03 17:37:03,384 root INFO copying build/lib.linux-i686-cpython-311/Bio/motifs/matrix.py -> build/bdist.linux-i686/wheel/Bio/motifs 2024-01-03 17:37:03,384 root INFO copying build/lib.linux-i686-cpython-311/Bio/motifs/thresholds.py -> build/bdist.linux-i686/wheel/Bio/motifs 2024-01-03 17:37:03,385 root INFO copying build/lib.linux-i686-cpython-311/Bio/motifs/_pwm.cpython-311-i386-linux-musl.so -> build/bdist.linux-i686/wheel/Bio/motifs 2024-01-03 17:37:03,385 root INFO creating build/bdist.linux-i686/wheel/Bio/motifs/applications 2024-01-03 17:37:03,385 root INFO copying build/lib.linux-i686-cpython-311/Bio/motifs/applications/__init__.py -> build/bdist.linux-i686/wheel/Bio/motifs/applications 2024-01-03 17:37:03,386 root INFO copying build/lib.linux-i686-cpython-311/Bio/motifs/applications/_xxmotif.py -> build/bdist.linux-i686/wheel/Bio/motifs/applications 2024-01-03 17:37:03,386 root INFO copying build/lib.linux-i686-cpython-311/Bio/motifs/_pwm.c -> build/bdist.linux-i686/wheel/Bio/motifs 2024-01-03 17:37:03,386 root INFO copying build/lib.linux-i686-cpython-311/Bio/motifs/__init__.py -> build/bdist.linux-i686/wheel/Bio/motifs 2024-01-03 17:37:03,386 root INFO copying build/lib.linux-i686-cpython-311/Bio/motifs/pfm.py -> build/bdist.linux-i686/wheel/Bio/motifs 2024-01-03 17:37:03,387 root INFO creating build/bdist.linux-i686/wheel/Bio/motifs/jaspar 2024-01-03 17:37:03,387 root INFO copying build/lib.linux-i686-cpython-311/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-i686/wheel/Bio/motifs/jaspar 2024-01-03 17:37:03,387 root INFO copying build/lib.linux-i686-cpython-311/Bio/motifs/jaspar/db.py -> build/bdist.linux-i686/wheel/Bio/motifs/jaspar 2024-01-03 17:37:03,388 root INFO copying build/lib.linux-i686-cpython-311/Bio/motifs/xms.py -> build/bdist.linux-i686/wheel/Bio/motifs 2024-01-03 17:37:03,388 root INFO copying build/lib.linux-i686-cpython-311/Bio/motifs/minimal.py -> build/bdist.linux-i686/wheel/Bio/motifs 2024-01-03 17:37:03,388 root INFO copying build/lib.linux-i686-cpython-311/Bio/motifs/alignace.py -> build/bdist.linux-i686/wheel/Bio/motifs 2024-01-03 17:37:03,389 root INFO copying build/lib.linux-i686-cpython-311/Bio/motifs/mast.py -> build/bdist.linux-i686/wheel/Bio/motifs 2024-01-03 17:37:03,389 root INFO copying build/lib.linux-i686-cpython-311/Bio/motifs/clusterbuster.py -> build/bdist.linux-i686/wheel/Bio/motifs 2024-01-03 17:37:03,389 root INFO copying build/lib.linux-i686-cpython-311/Bio/motifs/transfac.py -> build/bdist.linux-i686/wheel/Bio/motifs 2024-01-03 17:37:03,390 root INFO copying build/lib.linux-i686-cpython-311/Bio/motifs/meme.py -> build/bdist.linux-i686/wheel/Bio/motifs 2024-01-03 17:37:03,390 root INFO creating build/bdist.linux-i686/wheel/Bio/Cluster 2024-01-03 17:37:03,390 root INFO copying build/lib.linux-i686-cpython-311/Bio/Cluster/cluster.h -> build/bdist.linux-i686/wheel/Bio/Cluster 2024-01-03 17:37:03,390 root INFO copying build/lib.linux-i686-cpython-311/Bio/Cluster/cluster.c -> build/bdist.linux-i686/wheel/Bio/Cluster 2024-01-03 17:37:03,391 root INFO copying build/lib.linux-i686-cpython-311/Bio/Cluster/__init__.py -> build/bdist.linux-i686/wheel/Bio/Cluster 2024-01-03 17:37:03,391 root INFO copying build/lib.linux-i686-cpython-311/Bio/Cluster/clustermodule.c -> build/bdist.linux-i686/wheel/Bio/Cluster 2024-01-03 17:37:03,392 root INFO copying build/lib.linux-i686-cpython-311/Bio/Cluster/_cluster.cpython-311-i386-linux-musl.so -> build/bdist.linux-i686/wheel/Bio/Cluster 2024-01-03 17:37:03,393 root INFO copying build/lib.linux-i686-cpython-311/Bio/LogisticRegression.py -> build/bdist.linux-i686/wheel/Bio 2024-01-03 17:37:03,393 root INFO creating build/bdist.linux-i686/wheel/Bio/Phylo 2024-01-03 17:37:03,393 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/PhyloXML.py -> build/bdist.linux-i686/wheel/Bio/Phylo 2024-01-03 17:37:03,394 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/_io.py -> build/bdist.linux-i686/wheel/Bio/Phylo 2024-01-03 17:37:03,394 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/NewickIO.py -> build/bdist.linux-i686/wheel/Bio/Phylo 2024-01-03 17:37:03,394 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-i686/wheel/Bio/Phylo 2024-01-03 17:37:03,394 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-i686/wheel/Bio/Phylo 2024-01-03 17:37:03,395 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/NexusIO.py -> build/bdist.linux-i686/wheel/Bio/Phylo 2024-01-03 17:37:03,395 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/CDAOIO.py -> build/bdist.linux-i686/wheel/Bio/Phylo 2024-01-03 17:37:03,396 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/NeXML.py -> build/bdist.linux-i686/wheel/Bio/Phylo 2024-01-03 17:37:03,396 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/__init__.py -> build/bdist.linux-i686/wheel/Bio/Phylo 2024-01-03 17:37:03,396 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/Consensus.py -> build/bdist.linux-i686/wheel/Bio/Phylo 2024-01-03 17:37:03,396 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/_utils.py -> build/bdist.linux-i686/wheel/Bio/Phylo 2024-01-03 17:37:03,397 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-i686/wheel/Bio/Phylo 2024-01-03 17:37:03,397 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-i686/wheel/Bio/Phylo 2024-01-03 17:37:03,398 root INFO creating build/bdist.linux-i686/wheel/Bio/Phylo/PAML 2024-01-03 17:37:03,398 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-i686/wheel/Bio/Phylo/PAML 2024-01-03 17:37:03,398 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-i686/wheel/Bio/Phylo/PAML 2024-01-03 17:37:03,398 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-i686/wheel/Bio/Phylo/PAML 2024-01-03 17:37:03,399 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-i686/wheel/Bio/Phylo/PAML 2024-01-03 17:37:03,399 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-i686/wheel/Bio/Phylo/PAML 2024-01-03 17:37:03,399 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-i686/wheel/Bio/Phylo/PAML 2024-01-03 17:37:03,400 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-i686/wheel/Bio/Phylo/PAML 2024-01-03 17:37:03,400 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-i686/wheel/Bio/Phylo/PAML 2024-01-03 17:37:03,400 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-i686/wheel/Bio/Phylo/PAML 2024-01-03 17:37:03,400 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/CDAO.py -> build/bdist.linux-i686/wheel/Bio/Phylo 2024-01-03 17:37:03,401 root INFO creating build/bdist.linux-i686/wheel/Bio/Phylo/Applications 2024-01-03 17:37:03,401 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/Applications/__init__.py -> build/bdist.linux-i686/wheel/Bio/Phylo/Applications 2024-01-03 17:37:03,401 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/Applications/_Fasttree.py -> build/bdist.linux-i686/wheel/Bio/Phylo/Applications 2024-01-03 17:37:03,402 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/Applications/_Phyml.py -> build/bdist.linux-i686/wheel/Bio/Phylo/Applications 2024-01-03 17:37:03,402 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/Applications/_Raxml.py -> build/bdist.linux-i686/wheel/Bio/Phylo/Applications 2024-01-03 17:37:03,402 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/BaseTree.py -> build/bdist.linux-i686/wheel/Bio/Phylo 2024-01-03 17:37:03,403 root INFO copying build/lib.linux-i686-cpython-311/Bio/Phylo/Newick.py -> build/bdist.linux-i686/wheel/Bio/Phylo 2024-01-03 17:37:03,403 root INFO creating build/bdist.linux-i686/wheel/Bio/Blast 2024-01-03 17:37:03,403 root INFO copying build/lib.linux-i686-cpython-311/Bio/Blast/NCBIXML.py -> build/bdist.linux-i686/wheel/Bio/Blast 2024-01-03 17:37:03,403 root INFO copying build/lib.linux-i686-cpython-311/Bio/Blast/__init__.py -> build/bdist.linux-i686/wheel/Bio/Blast 2024-01-03 17:37:03,404 root INFO copying build/lib.linux-i686-cpython-311/Bio/Blast/Applications.py -> build/bdist.linux-i686/wheel/Bio/Blast 2024-01-03 17:37:03,404 root INFO copying build/lib.linux-i686-cpython-311/Bio/Blast/Record.py -> build/bdist.linux-i686/wheel/Bio/Blast 2024-01-03 17:37:03,405 root INFO copying build/lib.linux-i686-cpython-311/Bio/Blast/NCBIWWW.py -> build/bdist.linux-i686/wheel/Bio/Blast 2024-01-03 17:37:03,405 root INFO copying build/lib.linux-i686-cpython-311/Bio/MaxEntropy.py -> build/bdist.linux-i686/wheel/Bio 2024-01-03 17:37:03,405 root INFO creating build/bdist.linux-i686/wheel/Bio/TogoWS 2024-01-03 17:37:03,405 root INFO copying build/lib.linux-i686-cpython-311/Bio/TogoWS/__init__.py -> build/bdist.linux-i686/wheel/Bio/TogoWS 2024-01-03 17:37:03,406 root INFO creating build/bdist.linux-i686/wheel/Bio/Application 2024-01-03 17:37:03,406 root INFO copying build/lib.linux-i686-cpython-311/Bio/Application/__init__.py -> build/bdist.linux-i686/wheel/Bio/Application 2024-01-03 17:37:03,406 root INFO creating build/bdist.linux-i686/wheel/Bio/Pathway 2024-01-03 17:37:03,407 root INFO copying build/lib.linux-i686-cpython-311/Bio/Pathway/__init__.py -> build/bdist.linux-i686/wheel/Bio/Pathway 2024-01-03 17:37:03,407 root INFO creating build/bdist.linux-i686/wheel/Bio/Pathway/Rep 2024-01-03 17:37:03,407 root INFO copying build/lib.linux-i686-cpython-311/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-i686/wheel/Bio/Pathway/Rep 2024-01-03 17:37:03,407 root INFO copying build/lib.linux-i686-cpython-311/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-i686/wheel/Bio/Pathway/Rep 2024-01-03 17:37:03,408 root INFO copying build/lib.linux-i686-cpython-311/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-i686/wheel/Bio/Pathway/Rep 2024-01-03 17:37:03,408 root INFO creating build/bdist.linux-i686/wheel/Bio/Geo 2024-01-03 17:37:03,408 root INFO copying build/lib.linux-i686-cpython-311/Bio/Geo/__init__.py -> build/bdist.linux-i686/wheel/Bio/Geo 2024-01-03 17:37:03,409 root INFO copying build/lib.linux-i686-cpython-311/Bio/Geo/Record.py -> build/bdist.linux-i686/wheel/Bio/Geo 2024-01-03 17:37:03,409 root INFO creating build/bdist.linux-i686/wheel/Bio/Restriction 2024-01-03 17:37:03,409 root INFO copying build/lib.linux-i686-cpython-311/Bio/Restriction/PrintFormat.py -> build/bdist.linux-i686/wheel/Bio/Restriction 2024-01-03 17:37:03,409 root INFO copying build/lib.linux-i686-cpython-311/Bio/Restriction/Restriction.py -> build/bdist.linux-i686/wheel/Bio/Restriction 2024-01-03 17:37:03,410 root INFO copying build/lib.linux-i686-cpython-311/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-i686/wheel/Bio/Restriction 2024-01-03 17:37:03,411 root INFO copying build/lib.linux-i686-cpython-311/Bio/Restriction/__init__.py -> build/bdist.linux-i686/wheel/Bio/Restriction 2024-01-03 17:37:03,412 root INFO creating build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,412 root INFO creating build/bdist.linux-i686/wheel/Bio/PDB/mmtf 2024-01-03 17:37:03,412 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-i686/wheel/Bio/PDB/mmtf 2024-01-03 17:37:03,412 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-i686/wheel/Bio/PDB/mmtf 2024-01-03 17:37:03,413 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-i686/wheel/Bio/PDB/mmtf 2024-01-03 17:37:03,413 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/SCADIO.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,413 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/vectors.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,414 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,414 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/internal_coords.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,415 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/cealign.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,415 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/StructureBuilder.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,415 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/kdtrees.c -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,416 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/PDBExceptions.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,416 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/DSSP.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,416 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/Entity.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,417 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/PICIO.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,417 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/kdtrees.cpython-311-i386-linux-musl.so -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,417 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/ccealignmodule.c -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,418 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/MMCIFParser.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,418 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/Dice.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,418 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/Selection.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,418 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,419 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/ic_rebuild.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,419 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/FragmentMapper.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,419 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/Polypeptide.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,420 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/PSEA.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,420 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/__init__.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,420 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/PDBIO.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,421 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/Residue.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,421 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/PDBList.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,421 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/Model.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,421 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/StructureAlignment.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,422 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/Chain.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,422 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/NeighborSearch.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,422 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/PDBParser.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,423 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,423 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/Atom.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,423 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/ccealign.cpython-311-i386-linux-musl.so -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,424 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/mmcifio.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,424 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/Superimposer.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,424 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/SASA.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,425 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/NACCESS.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,425 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/HSExposure.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,425 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/qcprot.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,425 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/ic_data.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,426 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/ResidueDepth.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,426 root INFO copying build/lib.linux-i686-cpython-311/Bio/PDB/Structure.py -> build/bdist.linux-i686/wheel/Bio/PDB 2024-01-03 17:37:03,427 root INFO creating build/bdist.linux-i686/wheel/Bio/SCOP 2024-01-03 17:37:03,427 root INFO copying build/lib.linux-i686-cpython-311/Bio/SCOP/Des.py -> build/bdist.linux-i686/wheel/Bio/SCOP 2024-01-03 17:37:03,427 root INFO copying build/lib.linux-i686-cpython-311/Bio/SCOP/Raf.py -> build/bdist.linux-i686/wheel/Bio/SCOP 2024-01-03 17:37:03,427 root INFO copying build/lib.linux-i686-cpython-311/Bio/SCOP/Cla.py -> build/bdist.linux-i686/wheel/Bio/SCOP 2024-01-03 17:37:03,428 root INFO copying build/lib.linux-i686-cpython-311/Bio/SCOP/__init__.py -> build/bdist.linux-i686/wheel/Bio/SCOP 2024-01-03 17:37:03,428 root INFO copying build/lib.linux-i686-cpython-311/Bio/SCOP/Hie.py -> build/bdist.linux-i686/wheel/Bio/SCOP 2024-01-03 17:37:03,428 root INFO copying build/lib.linux-i686-cpython-311/Bio/SCOP/Residues.py -> build/bdist.linux-i686/wheel/Bio/SCOP 2024-01-03 17:37:03,428 root INFO copying build/lib.linux-i686-cpython-311/Bio/SCOP/Dom.py -> build/bdist.linux-i686/wheel/Bio/SCOP 2024-01-03 17:37:03,429 root INFO copying build/lib.linux-i686-cpython-311/Bio/__init__.py -> build/bdist.linux-i686/wheel/Bio 2024-01-03 17:37:03,429 root INFO creating build/bdist.linux-i686/wheel/Bio/codonalign 2024-01-03 17:37:03,429 root INFO copying build/lib.linux-i686-cpython-311/Bio/codonalign/codonseq.py -> build/bdist.linux-i686/wheel/Bio/codonalign 2024-01-03 17:37:03,430 root INFO copying build/lib.linux-i686-cpython-311/Bio/codonalign/codonalignment.py -> build/bdist.linux-i686/wheel/Bio/codonalign 2024-01-03 17:37:03,430 root INFO copying build/lib.linux-i686-cpython-311/Bio/codonalign/__init__.py -> build/bdist.linux-i686/wheel/Bio/codonalign 2024-01-03 17:37:03,430 root INFO creating build/bdist.linux-i686/wheel/Bio/Nexus 2024-01-03 17:37:03,431 root INFO copying build/lib.linux-i686-cpython-311/Bio/Nexus/Nexus.py -> build/bdist.linux-i686/wheel/Bio/Nexus 2024-01-03 17:37:03,431 root INFO copying build/lib.linux-i686-cpython-311/Bio/Nexus/Trees.py -> build/bdist.linux-i686/wheel/Bio/Nexus 2024-01-03 17:37:03,431 root INFO copying build/lib.linux-i686-cpython-311/Bio/Nexus/__init__.py -> build/bdist.linux-i686/wheel/Bio/Nexus 2024-01-03 17:37:03,432 root INFO copying build/lib.linux-i686-cpython-311/Bio/Nexus/cnexus.c -> build/bdist.linux-i686/wheel/Bio/Nexus 2024-01-03 17:37:03,432 root INFO copying build/lib.linux-i686-cpython-311/Bio/Nexus/cnexus.cpython-311-i386-linux-musl.so -> build/bdist.linux-i686/wheel/Bio/Nexus 2024-01-03 17:37:03,432 root INFO copying build/lib.linux-i686-cpython-311/Bio/Nexus/StandardData.py -> build/bdist.linux-i686/wheel/Bio/Nexus 2024-01-03 17:37:03,432 root INFO copying build/lib.linux-i686-cpython-311/Bio/Nexus/Nodes.py -> build/bdist.linux-i686/wheel/Bio/Nexus 2024-01-03 17:37:03,433 root INFO creating build/bdist.linux-i686/wheel/Bio/ExPASy 2024-01-03 17:37:03,433 root INFO copying build/lib.linux-i686-cpython-311/Bio/ExPASy/Prosite.py -> build/bdist.linux-i686/wheel/Bio/ExPASy 2024-01-03 17:37:03,433 root INFO copying build/lib.linux-i686-cpython-311/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-i686/wheel/Bio/ExPASy 2024-01-03 17:37:03,434 root INFO copying build/lib.linux-i686-cpython-311/Bio/ExPASy/__init__.py -> build/bdist.linux-i686/wheel/Bio/ExPASy 2024-01-03 17:37:03,434 root INFO copying build/lib.linux-i686-cpython-311/Bio/ExPASy/Prodoc.py -> build/bdist.linux-i686/wheel/Bio/ExPASy 2024-01-03 17:37:03,434 root INFO copying build/lib.linux-i686-cpython-311/Bio/ExPASy/Enzyme.py -> build/bdist.linux-i686/wheel/Bio/ExPASy 2024-01-03 17:37:03,435 root INFO copying build/lib.linux-i686-cpython-311/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-i686/wheel/Bio/ExPASy 2024-01-03 17:37:03,435 root INFO creating build/bdist.linux-i686/wheel/Bio/Emboss 2024-01-03 17:37:03,435 root INFO copying build/lib.linux-i686-cpython-311/Bio/Emboss/Primer3.py -> build/bdist.linux-i686/wheel/Bio/Emboss 2024-01-03 17:37:03,435 root INFO copying build/lib.linux-i686-cpython-311/Bio/Emboss/__init__.py -> build/bdist.linux-i686/wheel/Bio/Emboss 2024-01-03 17:37:03,436 root INFO copying build/lib.linux-i686-cpython-311/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-i686/wheel/Bio/Emboss 2024-01-03 17:37:03,436 root INFO copying build/lib.linux-i686-cpython-311/Bio/Emboss/Applications.py -> build/bdist.linux-i686/wheel/Bio/Emboss 2024-01-03 17:37:03,436 root INFO copying build/lib.linux-i686-cpython-311/Bio/py.typed -> build/bdist.linux-i686/wheel/Bio 2024-01-03 17:37:03,437 root INFO creating build/bdist.linux-i686/wheel/Bio/AlignIO 2024-01-03 17:37:03,437 root INFO copying build/lib.linux-i686-cpython-311/Bio/AlignIO/MafIO.py -> build/bdist.linux-i686/wheel/Bio/AlignIO 2024-01-03 17:37:03,437 root INFO copying build/lib.linux-i686-cpython-311/Bio/AlignIO/NexusIO.py -> build/bdist.linux-i686/wheel/Bio/AlignIO 2024-01-03 17:37:03,438 root INFO copying build/lib.linux-i686-cpython-311/Bio/AlignIO/MsfIO.py -> build/bdist.linux-i686/wheel/Bio/AlignIO 2024-01-03 17:37:03,438 root INFO copying build/lib.linux-i686-cpython-311/Bio/AlignIO/__init__.py -> build/bdist.linux-i686/wheel/Bio/AlignIO 2024-01-03 17:37:03,438 root INFO copying build/lib.linux-i686-cpython-311/Bio/AlignIO/MauveIO.py -> build/bdist.linux-i686/wheel/Bio/AlignIO 2024-01-03 17:37:03,439 root INFO copying build/lib.linux-i686-cpython-311/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-i686/wheel/Bio/AlignIO 2024-01-03 17:37:03,439 root INFO copying build/lib.linux-i686-cpython-311/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-i686/wheel/Bio/AlignIO 2024-01-03 17:37:03,439 root INFO copying build/lib.linux-i686-cpython-311/Bio/AlignIO/FastaIO.py -> build/bdist.linux-i686/wheel/Bio/AlignIO 2024-01-03 17:37:03,439 root INFO copying build/lib.linux-i686-cpython-311/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-i686/wheel/Bio/AlignIO 2024-01-03 17:37:03,440 root INFO copying build/lib.linux-i686-cpython-311/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-i686/wheel/Bio/AlignIO 2024-01-03 17:37:03,440 root INFO copying build/lib.linux-i686-cpython-311/Bio/AlignIO/Interfaces.py -> build/bdist.linux-i686/wheel/Bio/AlignIO 2024-01-03 17:37:03,440 root INFO creating build/bdist.linux-i686/wheel/Bio/Affy 2024-01-03 17:37:03,441 root INFO copying build/lib.linux-i686-cpython-311/Bio/Affy/__init__.py -> build/bdist.linux-i686/wheel/Bio/Affy 2024-01-03 17:37:03,441 root INFO copying build/lib.linux-i686-cpython-311/Bio/Affy/CelFile.py -> build/bdist.linux-i686/wheel/Bio/Affy 2024-01-03 17:37:03,441 root INFO creating build/bdist.linux-i686/wheel/Bio/SeqUtils 2024-01-03 17:37:03,442 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqUtils/lcc.py -> build/bdist.linux-i686/wheel/Bio/SeqUtils 2024-01-03 17:37:03,442 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-i686/wheel/Bio/SeqUtils 2024-01-03 17:37:03,442 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-i686/wheel/Bio/SeqUtils 2024-01-03 17:37:03,442 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-i686/wheel/Bio/SeqUtils 2024-01-03 17:37:03,443 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqUtils/__init__.py -> build/bdist.linux-i686/wheel/Bio/SeqUtils 2024-01-03 17:37:03,443 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-i686/wheel/Bio/SeqUtils 2024-01-03 17:37:03,443 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-i686/wheel/Bio/SeqUtils 2024-01-03 17:37:03,444 root INFO copying build/lib.linux-i686-cpython-311/Bio/File.py -> build/bdist.linux-i686/wheel/Bio 2024-01-03 17:37:03,444 root INFO creating build/bdist.linux-i686/wheel/Bio/SVDSuperimposer 2024-01-03 17:37:03,444 root INFO copying build/lib.linux-i686-cpython-311/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-i686/wheel/Bio/SVDSuperimposer 2024-01-03 17:37:03,445 root INFO copying build/lib.linux-i686-cpython-311/Bio/cpairwise2module.c -> build/bdist.linux-i686/wheel/Bio 2024-01-03 17:37:03,445 root INFO copying build/lib.linux-i686-cpython-311/Bio/_utils.py -> build/bdist.linux-i686/wheel/Bio 2024-01-03 17:37:03,445 root INFO creating build/bdist.linux-i686/wheel/Bio/Alphabet 2024-01-03 17:37:03,445 root INFO copying build/lib.linux-i686-cpython-311/Bio/Alphabet/__init__.py -> build/bdist.linux-i686/wheel/Bio/Alphabet 2024-01-03 17:37:03,446 root INFO creating build/bdist.linux-i686/wheel/Bio/Graphics 2024-01-03 17:37:03,446 root INFO copying build/lib.linux-i686-cpython-311/Bio/Graphics/Comparative.py -> build/bdist.linux-i686/wheel/Bio/Graphics 2024-01-03 17:37:03,446 root INFO copying build/lib.linux-i686-cpython-311/Bio/Graphics/KGML_vis.py -> build/bdist.linux-i686/wheel/Bio/Graphics 2024-01-03 17:37:03,447 root INFO copying build/lib.linux-i686-cpython-311/Bio/Graphics/__init__.py -> build/bdist.linux-i686/wheel/Bio/Graphics 2024-01-03 17:37:03,447 root INFO copying build/lib.linux-i686-cpython-311/Bio/Graphics/Distribution.py -> build/bdist.linux-i686/wheel/Bio/Graphics 2024-01-03 17:37:03,447 root INFO creating build/bdist.linux-i686/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:37:03,448 root INFO copying build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-i686/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:37:03,448 root INFO copying build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-i686/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:37:03,448 root INFO copying build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-i686/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:37:03,448 root INFO copying build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-i686/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:37:03,449 root INFO copying build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-i686/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:37:03,449 root INFO copying build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-i686/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:37:03,449 root INFO copying build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-i686/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:37:03,450 root INFO copying build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-i686/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:37:03,450 root INFO copying build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-i686/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:37:03,450 root INFO copying build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-i686/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:37:03,451 root INFO copying build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-i686/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:37:03,451 root INFO copying build/lib.linux-i686-cpython-311/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-i686/wheel/Bio/Graphics/GenomeDiagram 2024-01-03 17:37:03,451 root INFO copying build/lib.linux-i686-cpython-311/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-i686/wheel/Bio/Graphics 2024-01-03 17:37:03,452 root INFO copying build/lib.linux-i686-cpython-311/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-i686/wheel/Bio/Graphics 2024-01-03 17:37:03,452 root INFO copying build/lib.linux-i686-cpython-311/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-i686/wheel/Bio/Graphics 2024-01-03 17:37:03,452 root INFO copying build/lib.linux-i686-cpython-311/Bio/NaiveBayes.py -> build/bdist.linux-i686/wheel/Bio 2024-01-03 17:37:03,452 root INFO copying build/lib.linux-i686-cpython-311/Bio/kNN.py -> build/bdist.linux-i686/wheel/Bio 2024-01-03 17:37:03,453 root INFO creating build/bdist.linux-i686/wheel/Bio/NMR 2024-01-03 17:37:03,453 root INFO copying build/lib.linux-i686-cpython-311/Bio/NMR/xpktools.py -> build/bdist.linux-i686/wheel/Bio/NMR 2024-01-03 17:37:03,453 root INFO copying build/lib.linux-i686-cpython-311/Bio/NMR/__init__.py -> build/bdist.linux-i686/wheel/Bio/NMR 2024-01-03 17:37:03,454 root INFO copying build/lib.linux-i686-cpython-311/Bio/NMR/NOEtools.py -> build/bdist.linux-i686/wheel/Bio/NMR 2024-01-03 17:37:03,454 root INFO creating build/bdist.linux-i686/wheel/Bio/phenotype 2024-01-03 17:37:03,454 root INFO copying build/lib.linux-i686-cpython-311/Bio/phenotype/phen_micro.py -> build/bdist.linux-i686/wheel/Bio/phenotype 2024-01-03 17:37:03,454 root INFO copying build/lib.linux-i686-cpython-311/Bio/phenotype/pm_fitting.py -> build/bdist.linux-i686/wheel/Bio/phenotype 2024-01-03 17:37:03,455 root INFO copying build/lib.linux-i686-cpython-311/Bio/phenotype/__init__.py -> build/bdist.linux-i686/wheel/Bio/phenotype 2024-01-03 17:37:03,455 root INFO creating build/bdist.linux-i686/wheel/Bio/CAPS 2024-01-03 17:37:03,455 root INFO copying build/lib.linux-i686-cpython-311/Bio/CAPS/__init__.py -> build/bdist.linux-i686/wheel/Bio/CAPS 2024-01-03 17:37:03,456 root INFO creating build/bdist.linux-i686/wheel/Bio/HMM 2024-01-03 17:37:03,456 root INFO copying build/lib.linux-i686-cpython-311/Bio/HMM/Trainer.py -> build/bdist.linux-i686/wheel/Bio/HMM 2024-01-03 17:37:03,456 root INFO copying build/lib.linux-i686-cpython-311/Bio/HMM/MarkovModel.py -> build/bdist.linux-i686/wheel/Bio/HMM 2024-01-03 17:37:03,457 root INFO copying build/lib.linux-i686-cpython-311/Bio/HMM/DynamicProgramming.py -> build/bdist.linux-i686/wheel/Bio/HMM 2024-01-03 17:37:03,457 root INFO copying build/lib.linux-i686-cpython-311/Bio/HMM/__init__.py -> build/bdist.linux-i686/wheel/Bio/HMM 2024-01-03 17:37:03,457 root INFO copying build/lib.linux-i686-cpython-311/Bio/HMM/Utilities.py -> build/bdist.linux-i686/wheel/Bio/HMM 2024-01-03 17:37:03,458 root INFO creating build/bdist.linux-i686/wheel/Bio/KEGG 2024-01-03 17:37:03,458 root INFO creating build/bdist.linux-i686/wheel/Bio/KEGG/Gene 2024-01-03 17:37:03,458 root INFO copying build/lib.linux-i686-cpython-311/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-i686/wheel/Bio/KEGG/Gene 2024-01-03 17:37:03,458 root INFO creating build/bdist.linux-i686/wheel/Bio/KEGG/Compound 2024-01-03 17:37:03,459 root INFO copying build/lib.linux-i686-cpython-311/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-i686/wheel/Bio/KEGG/Compound 2024-01-03 17:37:03,459 root INFO copying build/lib.linux-i686-cpython-311/Bio/KEGG/__init__.py -> build/bdist.linux-i686/wheel/Bio/KEGG 2024-01-03 17:37:03,460 root INFO creating build/bdist.linux-i686/wheel/Bio/KEGG/Map 2024-01-03 17:37:03,460 root INFO copying build/lib.linux-i686-cpython-311/Bio/KEGG/Map/__init__.py -> build/bdist.linux-i686/wheel/Bio/KEGG/Map 2024-01-03 17:37:03,460 root INFO creating build/bdist.linux-i686/wheel/Bio/KEGG/Enzyme 2024-01-03 17:37:03,460 root INFO copying build/lib.linux-i686-cpython-311/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-i686/wheel/Bio/KEGG/Enzyme 2024-01-03 17:37:03,461 root INFO copying build/lib.linux-i686-cpython-311/Bio/KEGG/REST.py -> build/bdist.linux-i686/wheel/Bio/KEGG 2024-01-03 17:37:03,461 root INFO creating build/bdist.linux-i686/wheel/Bio/KEGG/KGML 2024-01-03 17:37:03,461 root INFO copying build/lib.linux-i686-cpython-311/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-i686/wheel/Bio/KEGG/KGML 2024-01-03 17:37:03,461 root INFO copying build/lib.linux-i686-cpython-311/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-i686/wheel/Bio/KEGG/KGML 2024-01-03 17:37:03,462 root INFO copying build/lib.linux-i686-cpython-311/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-i686/wheel/Bio/KEGG/KGML 2024-01-03 17:37:03,462 root INFO creating build/bdist.linux-i686/wheel/Bio/GenBank 2024-01-03 17:37:03,462 root INFO copying build/lib.linux-i686-cpython-311/Bio/GenBank/utils.py -> build/bdist.linux-i686/wheel/Bio/GenBank 2024-01-03 17:37:03,463 root INFO copying build/lib.linux-i686-cpython-311/Bio/GenBank/Scanner.py -> build/bdist.linux-i686/wheel/Bio/GenBank 2024-01-03 17:37:03,463 root INFO copying build/lib.linux-i686-cpython-311/Bio/GenBank/__init__.py -> build/bdist.linux-i686/wheel/Bio/GenBank 2024-01-03 17:37:03,464 root INFO copying build/lib.linux-i686-cpython-311/Bio/GenBank/Record.py -> build/bdist.linux-i686/wheel/Bio/GenBank 2024-01-03 17:37:03,464 root INFO creating build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,464 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/hhr.py -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,464 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/a2m.py -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,465 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/chain.py -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,465 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/AlignInfo.py -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,465 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/fasta.py -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,466 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/psl.py -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,466 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/clustal.py -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,466 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/emboss.py -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,467 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/_codonaligner.cpython-311-i386-linux-musl.so -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,467 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/bigmaf.py -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,467 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/nexus.py -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,468 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/tabular.py -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,468 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/__init__.py -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,469 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/msf.py -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,469 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/phylip.py -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,469 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/_pairwisealigner.cpython-311-i386-linux-musl.so -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,470 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/_pairwisealigner.c -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,471 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/mauve.py -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,471 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/stockholm.py -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,472 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/_codonaligner.c -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,472 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/analysis.py -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,472 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/interfaces.py -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,473 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/maf.py -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,473 root INFO creating build/bdist.linux-i686/wheel/Bio/Align/Applications 2024-01-03 17:37:03,473 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/Applications/_Clustalw.py -> build/bdist.linux-i686/wheel/Bio/Align/Applications 2024-01-03 17:37:03,473 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/Applications/_Muscle.py -> build/bdist.linux-i686/wheel/Bio/Align/Applications 2024-01-03 17:37:03,474 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/Applications/_Prank.py -> build/bdist.linux-i686/wheel/Bio/Align/Applications 2024-01-03 17:37:03,474 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/Applications/_Probcons.py -> build/bdist.linux-i686/wheel/Bio/Align/Applications 2024-01-03 17:37:03,474 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/Applications/_Mafft.py -> build/bdist.linux-i686/wheel/Bio/Align/Applications 2024-01-03 17:37:03,475 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/Applications/__init__.py -> build/bdist.linux-i686/wheel/Bio/Align/Applications 2024-01-03 17:37:03,475 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/Applications/_Dialign.py -> build/bdist.linux-i686/wheel/Bio/Align/Applications 2024-01-03 17:37:03,475 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/Applications/_TCoffee.py -> build/bdist.linux-i686/wheel/Bio/Align/Applications 2024-01-03 17:37:03,476 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/Applications/_MSAProbs.py -> build/bdist.linux-i686/wheel/Bio/Align/Applications 2024-01-03 17:37:03,476 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/Applications/_ClustalOmega.py -> build/bdist.linux-i686/wheel/Bio/Align/Applications 2024-01-03 17:37:03,476 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/exonerate.py -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,477 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/sam.py -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,477 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/bigbed.py -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,477 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/bigpsl.py -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,478 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/bed.py -> build/bdist.linux-i686/wheel/Bio/Align 2024-01-03 17:37:03,478 root INFO creating build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices 2024-01-03 17:37:03,478 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices 2024-01-03 17:37:03,479 root INFO creating build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,479 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,479 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,479 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,480 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,480 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,480 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,481 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,481 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,481 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,481 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,482 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,482 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,482 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,483 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,483 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,483 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,483 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,484 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,484 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,484 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,484 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,485 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,485 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,485 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,486 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,486 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,486 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,486 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,487 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,487 root INFO copying build/lib.linux-i686-cpython-311/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-i686/wheel/Bio/Align/substitution_matrices/data 2024-01-03 17:37:03,487 root INFO creating build/bdist.linux-i686/wheel/Bio/SearchIO 2024-01-03 17:37:03,488 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/BlatIO.py -> build/bdist.linux-i686/wheel/Bio/SearchIO 2024-01-03 17:37:03,488 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/__init__.py -> build/bdist.linux-i686/wheel/Bio/SearchIO 2024-01-03 17:37:03,488 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/_utils.py -> build/bdist.linux-i686/wheel/Bio/SearchIO 2024-01-03 17:37:03,489 root INFO creating build/bdist.linux-i686/wheel/Bio/SearchIO/BlastIO 2024-01-03 17:37:03,489 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-i686/wheel/Bio/SearchIO/BlastIO 2024-01-03 17:37:03,489 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-i686/wheel/Bio/SearchIO/BlastIO 2024-01-03 17:37:03,490 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-i686/wheel/Bio/SearchIO/BlastIO 2024-01-03 17:37:03,490 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/FastaIO.py -> build/bdist.linux-i686/wheel/Bio/SearchIO 2024-01-03 17:37:03,490 root INFO creating build/bdist.linux-i686/wheel/Bio/SearchIO/InterproscanIO 2024-01-03 17:37:03,490 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-i686/wheel/Bio/SearchIO/InterproscanIO 2024-01-03 17:37:03,491 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-i686/wheel/Bio/SearchIO/InterproscanIO 2024-01-03 17:37:03,491 root INFO creating build/bdist.linux-i686/wheel/Bio/SearchIO/ExonerateIO 2024-01-03 17:37:03,491 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-i686/wheel/Bio/SearchIO/ExonerateIO 2024-01-03 17:37:03,492 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-i686/wheel/Bio/SearchIO/ExonerateIO 2024-01-03 17:37:03,492 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-i686/wheel/Bio/SearchIO/ExonerateIO 2024-01-03 17:37:03,492 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-i686/wheel/Bio/SearchIO/ExonerateIO 2024-01-03 17:37:03,493 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-i686/wheel/Bio/SearchIO/ExonerateIO 2024-01-03 17:37:03,493 root INFO creating build/bdist.linux-i686/wheel/Bio/SearchIO/HmmerIO 2024-01-03 17:37:03,493 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-i686/wheel/Bio/SearchIO/HmmerIO 2024-01-03 17:37:03,493 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-i686/wheel/Bio/SearchIO/HmmerIO 2024-01-03 17:37:03,494 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-i686/wheel/Bio/SearchIO/HmmerIO 2024-01-03 17:37:03,494 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-i686/wheel/Bio/SearchIO/HmmerIO 2024-01-03 17:37:03,494 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-i686/wheel/Bio/SearchIO/HmmerIO 2024-01-03 17:37:03,495 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-i686/wheel/Bio/SearchIO/HmmerIO 2024-01-03 17:37:03,495 root INFO creating build/bdist.linux-i686/wheel/Bio/SearchIO/_model 2024-01-03 17:37:03,495 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-i686/wheel/Bio/SearchIO/_model 2024-01-03 17:37:03,496 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/_model/_base.py -> build/bdist.linux-i686/wheel/Bio/SearchIO/_model 2024-01-03 17:37:03,496 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-i686/wheel/Bio/SearchIO/_model 2024-01-03 17:37:03,496 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/_model/hit.py -> build/bdist.linux-i686/wheel/Bio/SearchIO/_model 2024-01-03 17:37:03,497 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/_model/query.py -> build/bdist.linux-i686/wheel/Bio/SearchIO/_model 2024-01-03 17:37:03,497 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/_index.py -> build/bdist.linux-i686/wheel/Bio/SearchIO 2024-01-03 17:37:03,497 root INFO creating build/bdist.linux-i686/wheel/Bio/SearchIO/HHsuiteIO 2024-01-03 17:37:03,497 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-i686/wheel/Bio/SearchIO/HHsuiteIO 2024-01-03 17:37:03,498 root INFO copying build/lib.linux-i686-cpython-311/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-i686/wheel/Bio/SearchIO/HHsuiteIO 2024-01-03 17:37:03,498 root INFO creating build/bdist.linux-i686/wheel/Bio/UniGene 2024-01-03 17:37:03,498 root INFO copying build/lib.linux-i686-cpython-311/Bio/UniGene/__init__.py -> build/bdist.linux-i686/wheel/Bio/UniGene 2024-01-03 17:37:03,499 root INFO creating build/bdist.linux-i686/wheel/Bio/PopGen 2024-01-03 17:37:03,499 root INFO creating build/bdist.linux-i686/wheel/Bio/PopGen/GenePop 2024-01-03 17:37:03,499 root INFO copying build/lib.linux-i686-cpython-311/Bio/PopGen/GenePop/Controller.py -> build/bdist.linux-i686/wheel/Bio/PopGen/GenePop 2024-01-03 17:37:03,499 root INFO copying build/lib.linux-i686-cpython-311/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-i686/wheel/Bio/PopGen/GenePop 2024-01-03 17:37:03,500 root INFO copying build/lib.linux-i686-cpython-311/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-i686/wheel/Bio/PopGen/GenePop 2024-01-03 17:37:03,500 root INFO copying build/lib.linux-i686-cpython-311/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-i686/wheel/Bio/PopGen/GenePop 2024-01-03 17:37:03,500 root INFO copying build/lib.linux-i686-cpython-311/Bio/PopGen/GenePop/EasyController.py -> build/bdist.linux-i686/wheel/Bio/PopGen/GenePop 2024-01-03 17:37:03,501 root INFO copying build/lib.linux-i686-cpython-311/Bio/PopGen/__init__.py -> build/bdist.linux-i686/wheel/Bio/PopGen 2024-01-03 17:37:03,501 root INFO copying build/lib.linux-i686-cpython-311/Bio/SeqRecord.py -> build/bdist.linux-i686/wheel/Bio 2024-01-03 17:37:03,501 root INFO creating build/bdist.linux-i686/wheel/Bio/Entrez 2024-01-03 17:37:03,502 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/__init__.py -> build/bdist.linux-i686/wheel/Bio/Entrez 2024-01-03 17:37:03,502 root INFO creating build/bdist.linux-i686/wheel/Bio/Entrez/XSDs 2024-01-03 17:37:03,502 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-i686/wheel/Bio/Entrez/XSDs 2024-01-03 17:37:03,503 root INFO creating build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,503 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,503 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,504 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,504 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,504 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/PDB_General.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,504 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,505 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,505 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,505 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,506 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,506 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/pubmed_020114.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,506 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,507 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,507 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,507 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,508 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,508 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,508 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,509 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,509 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,509 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,510 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,510 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,510 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,510 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,511 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,511 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,511 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,512 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,512 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,512 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,512 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,513 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/taxon.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,513 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,513 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,514 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,514 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,514 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,515 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,515 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,515 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,516 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,516 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,516 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,517 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,517 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,517 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,517 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,518 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,518 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,518 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,519 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,519 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,519 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,520 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,520 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,520 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,521 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,521 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,521 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,521 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,522 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,522 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,522 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,523 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,523 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,523 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,524 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,524 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,525 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,525 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,525 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,525 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,526 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,526 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,526 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,527 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,527 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,527 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,528 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,528 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,528 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,529 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,529 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,529 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,529 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,530 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,530 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,530 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,531 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,531 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,531 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/eLink_101123.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,531 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,532 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,532 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,532 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,533 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,533 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,533 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,533 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/isodia.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,534 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,534 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,534 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,535 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,535 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,535 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,536 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,536 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,536 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,537 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,537 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,537 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,538 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,538 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,538 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,539 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,539 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,539 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,540 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/pubmed_140101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,540 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,540 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,540 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,541 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,541 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,541 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,542 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,542 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,542 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,543 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,543 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,543 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,543 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/articlemeta.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,544 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,544 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,545 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,545 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,545 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,545 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,546 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,546 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,546 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,547 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,547 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,548 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,548 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,548 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,549 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,549 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,550 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/eSearch_020511.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,550 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,550 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,551 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/section.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,551 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,551 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,551 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,552 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,552 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,552 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,553 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,553 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,553 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,554 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,554 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,554 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,555 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,555 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,555 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,556 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,556 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,556 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,557 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,557 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,557 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,558 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,558 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,558 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,558 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,559 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,559 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,559 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,560 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/htmltable.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,560 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,560 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,561 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,561 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,561 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,562 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,562 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,562 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,562 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,563 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,563 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,563 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,564 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,564 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,564 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,565 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,565 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,565 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,565 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,566 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/mathml3.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,566 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,566 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,567 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,567 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,567 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,568 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,568 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,568 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,569 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,569 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,569 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,570 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,570 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,570 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,570 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,571 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,571 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,571 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,572 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,572 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,572 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,573 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,573 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,573 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,573 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,574 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,574 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,575 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,575 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,575 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,576 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,576 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,576 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,577 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,577 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,577 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,578 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,578 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,578 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,579 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,579 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,579 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,579 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,580 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,580 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,580 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,581 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,581 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,581 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,582 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,582 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,582 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,582 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,583 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,583 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,583 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,584 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,584 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,585 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,585 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,586 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,586 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,586 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,587 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,587 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,587 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,588 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,588 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,588 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,588 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,589 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,589 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,589 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,590 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,590 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,590 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,591 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,591 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,591 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,592 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,592 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,592 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,593 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,593 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,593 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,594 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-i686/wheel/Bio/Entrez/DTDs 2024-01-03 17:37:03,594 root INFO copying build/lib.linux-i686-cpython-311/Bio/Entrez/Parser.py -> build/bdist.linux-i686/wheel/Bio/Entrez 2024-01-03 17:37:03,594 root INFO creating build/bdist.linux-i686/wheel/Bio/Medline 2024-01-03 17:37:03,595 root INFO copying build/lib.linux-i686-cpython-311/Bio/Medline/__init__.py -> build/bdist.linux-i686/wheel/Bio/Medline 2024-01-03 17:37:03,595 root INFO creating build/bdist.linux-i686/wheel/BioSQL 2024-01-03 17:37:03,595 root INFO copying build/lib.linux-i686-cpython-311/BioSQL/__init__.py -> build/bdist.linux-i686/wheel/BioSQL 2024-01-03 17:37:03,596 root INFO copying build/lib.linux-i686-cpython-311/BioSQL/py.typed -> build/bdist.linux-i686/wheel/BioSQL 2024-01-03 17:37:03,596 root INFO copying build/lib.linux-i686-cpython-311/BioSQL/BioSeqDatabase.py -> build/bdist.linux-i686/wheel/BioSQL 2024-01-03 17:37:03,596 root INFO copying build/lib.linux-i686-cpython-311/BioSQL/DBUtils.py -> build/bdist.linux-i686/wheel/BioSQL 2024-01-03 17:37:03,596 root INFO copying build/lib.linux-i686-cpython-311/BioSQL/BioSeq.py -> build/bdist.linux-i686/wheel/BioSQL 2024-01-03 17:37:03,597 root INFO copying build/lib.linux-i686-cpython-311/BioSQL/Loader.py -> build/bdist.linux-i686/wheel/BioSQL 2024-01-03 17:37:03,597 root INFO running install_egg_info 2024-01-03 17:37:03,603 root INFO Copying biopython.egg-info to build/bdist.linux-i686/wheel/biopython-1.82-py3.11.egg-info 2024-01-03 17:37:03,605 root INFO running install_scripts 2024-01-03 17:37:03,611 wheel INFO creating build/bdist.linux-i686/wheel/biopython-1.82.dist-info/WHEEL 2024-01-03 17:37:03,612 wheel INFO creating '/home/buildozer/aports/community/py3-biopython/src/biopython-1.82/.dist/.tmp-0mar_zwc/biopython-1.82-cp311-cp311-linux_i686.whl' and adding 'build/bdist.linux-i686/wheel' to it 2024-01-03 17:37:03,613 wheel INFO adding 'Bio/File.py' 2024-01-03 17:37:03,613 wheel INFO adding 'Bio/LogisticRegression.py' 2024-01-03 17:37:03,614 wheel INFO adding 'Bio/MarkovModel.py' 2024-01-03 17:37:03,614 wheel INFO adding 'Bio/MaxEntropy.py' 2024-01-03 17:37:03,615 wheel INFO adding 'Bio/NaiveBayes.py' 2024-01-03 17:37:03,615 wheel INFO adding 'Bio/Seq.py' 2024-01-03 17:37:03,617 wheel INFO adding 'Bio/SeqFeature.py' 2024-01-03 17:37:03,618 wheel INFO adding 'Bio/SeqRecord.py' 2024-01-03 17:37:03,618 wheel INFO adding 'Bio/__init__.py' 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py3-biopython-pyc >>> py3-biopython*: Running postcheck for py3-biopython >>> py3-biopython*: Preparing package py3-biopython... >>> py3-biopython*: Stripping binaries >>> py3-biopython-pyc*: Scanning shared objects >>> py3-biopython*: Scanning shared objects >>> py3-biopython-pyc*: Tracing dependencies... py3-numpy python3 python3~3.11 >>> py3-biopython-pyc*: Package size: 7.8 MB >>> py3-biopython-pyc*: Compressing data... >>> py3-biopython-pyc*: Create checksum... >>> py3-biopython-pyc*: Create py3-biopython-pyc-1.82-r0.apk >>> py3-biopython*: Tracing dependencies... py3-numpy python3 python3~3.11 so:libc.musl-x86.so.1 >>> py3-biopython*: Package size: 12.4 MB >>> py3-biopython*: Compressing data... >>> py3-biopython*: Create checksum... >>> py3-biopython*: Create py3-biopython-1.82-r0.apk >>> py3-biopython: Build complete at Wed, 03 Jan 2024 17:37:07 +0000 elapsed time 0h 0m 27s >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Uninstalling dependencies... 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