>>> py3-kallisto: Building community/py3-kallisto 1.0.10-r0 (using abuild 3.11.21-r0) started Fri, 15 Sep 2023 13:37:41 +0000 >>> py3-kallisto: Checking sanity of /home/buildozer/aports/community/py3-kallisto/APKBUILD... >>> py3-kallisto: Analyzing dependencies... >>> py3-kallisto: Installing for build: build-base python3 py3-click py3-numpy py3-scipy py3-poetry-core py3-gpep517 py3-wheel python3-dev py3-pytest py3-pytest-runner (1/71) Installing libffi (3.4.4-r3) (2/71) Installing gdbm (1.23-r1) (3/71) Installing mpdecimal (2.5.1-r2) (4/71) Installing libpanelw (6.4_p20230722-r0) (5/71) Installing readline (8.2.1-r2) (6/71) Installing sqlite-libs (3.43.1-r0) (7/71) Installing python3 (3.11.5-r0) (8/71) Installing python3-pycache-pyc0 (3.11.5-r0) (9/71) Installing pyc (0.1-r0) (10/71) Installing python3-pyc (3.11.5-r0) (11/71) Installing py3-click (8.1.6-r0) (12/71) Installing py3-click-pyc (8.1.6-r0) (13/71) Installing libquadmath (13.1.1_git20230722-r2) (14/71) Installing libgfortran (13.1.1_git20230722-r2) (15/71) Installing openblas (0.3.24-r0) (16/71) Installing py3-numpy (1.25.2-r0) (17/71) Installing py3-numpy-pyc (1.25.2-r0) (18/71) Installing py3-parsing (3.1.1-r0) (19/71) Installing py3-parsing-pyc (3.1.1-r0) (20/71) Installing py3-packaging (23.1-r3) (21/71) Installing py3-packaging-pyc (23.1-r3) (22/71) Installing py3-platformdirs (3.10.0-r0) (23/71) Installing py3-platformdirs-pyc (3.10.0-r0) (24/71) Installing py3-certifi (2023.7.22-r0) (25/71) Installing py3-certifi-pyc (2023.7.22-r0) (26/71) Installing py3-charset-normalizer (3.2.0-r0) (27/71) Installing py3-charset-normalizer-pyc (3.2.0-r0) (28/71) Installing py3-idna (3.4-r4) (29/71) Installing py3-idna-pyc (3.4-r4) (30/71) Installing py3-urllib3 (1.26.16-r0) (31/71) Installing py3-urllib3-pyc (1.26.16-r0) (32/71) Installing py3-requests (2.31.0-r1) (33/71) Installing py3-requests-pyc (2.31.0-r1) (34/71) Installing py3-pooch (1.7.0-r2) (35/71) Installing py3-pooch-pyc (1.7.0-r2) (36/71) Installing py3-scipy (1.11.2-r0) (37/71) Installing py3-scipy-pyc (1.11.2-r0) (38/71) Installing py3-attrs (23.1.0-r1) (39/71) Installing py3-attrs-pyc (23.1.0-r1) (40/71) Installing py3-rpds-py (0.9.2-r2) (41/71) Installing py3-rpds-py-pyc (0.9.2-r2) (42/71) Installing py3-referencing (0.30.2-r0) (43/71) Installing py3-referencing-pyc (0.30.2-r0) (44/71) Installing py3-jsonschema-specifications (2023.07.1-r1) (45/71) Installing py3-jsonschema-specifications-pyc (2023.07.1-r1) (46/71) Installing py3-jsonschema (4.19.0-r0) (47/71) Installing py3-jsonschema-pyc (4.19.0-r0) (48/71) Installing py3-lark-parser (1.1.7-r0) (49/71) Installing py3-lark-parser-pyc (1.1.7-r0) (50/71) Installing py3-poetry-core (1.7.0-r0) (51/71) Installing py3-poetry-core-pyc (1.7.0-r0) (52/71) Installing py3-installer (0.7.0-r1) (53/71) Installing py3-installer-pyc (0.7.0-r1) (54/71) Installing py3-gpep517 (15-r0) (55/71) Installing py3-gpep517-pyc (15-r0) (56/71) Installing py3-wheel (0.41.2-r0) (57/71) Installing py3-wheel-pyc (0.41.2-r0) (58/71) Installing python3-dev (3.11.5-r0) (59/71) Installing py3-iniconfig (1.1.1-r6) (60/71) Installing py3-iniconfig-pyc (1.1.1-r6) (61/71) Installing py3-pluggy (1.3.0-r0) (62/71) Installing py3-pluggy-pyc (1.3.0-r0) (63/71) Installing py3-py (1.11.0-r2) (64/71) Installing py3-py-pyc (1.11.0-r2) (65/71) Installing py3-pytest (7.4.2-r0) (66/71) Installing py3-pytest-pyc (7.4.2-r0) (67/71) Installing py3-setuptools (68.2.1-r0) (68/71) Installing py3-setuptools-pyc (68.2.1-r0) (69/71) Installing py3-pytest-runner (6.0.0-r2) (70/71) Installing py3-pytest-runner-pyc (6.0.0-r2) (71/71) Installing .makedepends-py3-kallisto (20230915.133743) Executing busybox-1.36.1-r7.trigger OK: 606 MiB in 181 packages >>> py3-kallisto: Cleaning up srcdir >>> py3-kallisto: Cleaning up pkgdir >>> py3-kallisto: Cleaning up tmpdir >>> py3-kallisto: Fetching https://distfiles.alpinelinux.org/distfiles/edge/kallisto-1.0.10.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 146 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 curl: (22) The requested URL returned error: 404 >>> py3-kallisto: Fetching https://github.com/AstraZeneca/kallisto/archive/v1.0.10/kallisto-1.0.10.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 158k 0 158k 0 0 282k 0 --:--:-- --:--:-- --:--:-- 282k >>> py3-kallisto: Fetching https://distfiles.alpinelinux.org/distfiles/edge/kallisto-1.0.10.tar.gz >>> py3-kallisto: Checking sha512sums... kallisto-1.0.10.tar.gz: OK poetry.patch: OK >>> py3-kallisto: Unpacking /var/cache/distfiles/edge/kallisto-1.0.10.tar.gz... >>> py3-kallisto: poetry.patch patching file pyproject.toml 2023-09-15 13:37:46,205 gpep517 INFO Building wheel via backend poetry.core.masonry.api 2023-09-15 13:37:46,482 poetry.core.masonry.builders.wheel INFO Building wheel fatal: not a git repository (or any of the parent directories): .git 2023-09-15 13:37:46,516 poetry.core.masonry.builders.wheel INFO Built kallisto-1.0.10-py3-none-any.whl 2023-09-15 13:37:46,516 gpep517 INFO The backend produced .dist/kallisto-1.0.10-py3-none-any.whl kallisto-1.0.10-py3-none-any.whl ============================= test session starts ============================== platform linux -- Python 3.11.5, pytest-7.4.2, pluggy-1.3.0 rootdir: /home/buildozer/aports/community/py3-kallisto/src/kallisto-1.0.10 collected 95 items tests/test_alp.py ... [ 3%] tests/test_atom.py ...... [ 9%] tests/test_bonds.py ... [ 12%] tests/test_cli.py ........................................... [ 57%] tests/test_cns.py ... [ 61%] tests/test_eeq.py ... [ 64%] tests/test_exs.py .. [ 66%] tests/test_grid.py . [ 67%] tests/test_lig.py . [ 68%] tests/test_molecule.py ............ [ 81%] tests/test_prox.py .. [ 83%] tests/test_rms.py . [ 84%] tests/test_stm.py . [ 85%] tests/test_strucreader.py ..... [ 90%] tests/test_vdw.py ........ [ 98%] tests/test_version.py . [100%] ============================== 95 passed in 2.50s ============================== >>> py3-kallisto: Entering fakeroot... >>> py3-kallisto-pyc*: Running split function pyc... '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto/usr/lib/python3.11/site-packages/kallisto/utils/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.11/site-packages/kallisto/utils/__pycache__' '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto/usr/lib/python3.11/site-packages/kallisto/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.11/site-packages/kallisto/__pycache__' '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto/usr/lib/python3.11/site-packages/kallisto/data/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.11/site-packages/kallisto/data/__pycache__' '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto/usr/lib/python3.11/site-packages/kallisto/reader/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.11/site-packages/kallisto/reader/__pycache__' >>> py3-kallisto-pyc*: Preparing subpackage py3-kallisto-pyc... >>> py3-kallisto-pyc*: Running postcheck for py3-kallisto-pyc >>> py3-kallisto*: Running postcheck for py3-kallisto >>> py3-kallisto*: Preparing package py3-kallisto... >>> py3-kallisto-pyc*: Tracing dependencies... python3 py3-click py3-numpy py3-scipy python3~3.11 >>> py3-kallisto-pyc*: Package size: 708.0 KB >>> py3-kallisto-pyc*: Compressing data... >>> py3-kallisto-pyc*: Create checksum... >>> py3-kallisto-pyc*: Create py3-kallisto-pyc-1.0.10-r0.apk >>> py3-kallisto*: Tracing dependencies... python3 py3-click py3-numpy py3-scipy python3~3.11 >>> py3-kallisto*: Package size: 500.0 KB >>> py3-kallisto*: Compressing data... >>> py3-kallisto*: Create checksum... >>> py3-kallisto*: Create py3-kallisto-1.0.10-r0.apk >>> py3-kallisto: Build complete at Fri, 15 Sep 2023 13:37:51 +0000 elapsed time 0h 0m 10s >>> py3-kallisto: Cleaning up srcdir >>> py3-kallisto: Cleaning up pkgdir >>> py3-kallisto: Uninstalling dependencies... (1/71) Purging .makedepends-py3-kallisto (20230915.133743) (2/71) Purging py3-click-pyc (8.1.6-r0) (3/71) Purging py3-click (8.1.6-r0) (4/71) Purging py3-scipy-pyc (1.11.2-r0) (5/71) Purging py3-scipy (1.11.2-r0) (6/71) Purging py3-pooch-pyc (1.7.0-r2) (7/71) Purging py3-pooch (1.7.0-r2) (8/71) Purging py3-platformdirs-pyc (3.10.0-r0) (9/71) Purging py3-platformdirs (3.10.0-r0) (10/71) Purging py3-requests-pyc (2.31.0-r1) (11/71) Purging py3-requests (2.31.0-r1) (12/71) Purging py3-certifi-pyc (2023.7.22-r0) (13/71) Purging py3-certifi (2023.7.22-r0) (14/71) Purging py3-charset-normalizer-pyc (3.2.0-r0) (15/71) Purging py3-charset-normalizer (3.2.0-r0) (16/71) Purging py3-idna-pyc (3.4-r4) (17/71) Purging py3-idna (3.4-r4) (18/71) Purging py3-urllib3-pyc (1.26.16-r0) (19/71) Purging py3-urllib3 (1.26.16-r0) (20/71) Purging py3-numpy-pyc (1.25.2-r0) (21/71) Purging py3-numpy (1.25.2-r0) (22/71) Purging openblas (0.3.24-r0) (23/71) Purging py3-poetry-core-pyc (1.7.0-r0) (24/71) Purging py3-poetry-core (1.7.0-r0) (25/71) Purging py3-jsonschema-pyc (4.19.0-r0) (26/71) Purging py3-jsonschema (4.19.0-r0) (27/71) Purging py3-jsonschema-specifications-pyc (2023.07.1-r1) (28/71) Purging py3-jsonschema-specifications (2023.07.1-r1) (29/71) Purging py3-referencing-pyc (0.30.2-r0) (30/71) Purging py3-referencing (0.30.2-r0) (31/71) Purging py3-attrs-pyc (23.1.0-r1) (32/71) Purging py3-attrs (23.1.0-r1) (33/71) Purging py3-rpds-py-pyc (0.9.2-r2) (34/71) Purging py3-rpds-py (0.9.2-r2) (35/71) Purging py3-lark-parser-pyc (1.1.7-r0) (36/71) Purging py3-lark-parser (1.1.7-r0) (37/71) Purging py3-gpep517-pyc (15-r0) (38/71) Purging py3-gpep517 (15-r0) (39/71) Purging py3-installer-pyc (0.7.0-r1) (40/71) Purging py3-installer (0.7.0-r1) (41/71) Purging py3-wheel-pyc (0.41.2-r0) (42/71) Purging py3-wheel (0.41.2-r0) (43/71) Purging python3-dev (3.11.5-r0) (44/71) Purging py3-pytest-runner-pyc (6.0.0-r2) (45/71) Purging py3-pytest-runner (6.0.0-r2) (46/71) Purging py3-pytest-pyc (7.4.2-r0) (47/71) Purging py3-pytest (7.4.2-r0) (48/71) Purging py3-iniconfig-pyc (1.1.1-r6) (49/71) Purging py3-iniconfig (1.1.1-r6) (50/71) Purging py3-pluggy-pyc (1.3.0-r0) (51/71) Purging py3-pluggy (1.3.0-r0) (52/71) Purging py3-py-pyc (1.11.0-r2) (53/71) Purging py3-py (1.11.0-r2) (54/71) Purging py3-setuptools-pyc (68.2.1-r0) (55/71) Purging py3-setuptools (68.2.1-r0) (56/71) Purging py3-packaging-pyc (23.1-r3) (57/71) Purging py3-packaging (23.1-r3) (58/71) Purging py3-parsing-pyc (3.1.1-r0) (59/71) Purging py3-parsing (3.1.1-r0) (60/71) Purging libgfortran (13.1.1_git20230722-r2) (61/71) Purging libquadmath (13.1.1_git20230722-r2) (62/71) Purging python3-pyc (3.11.5-r0) (63/71) Purging python3-pycache-pyc0 (3.11.5-r0) (64/71) Purging pyc (0.1-r0) (65/71) Purging python3 (3.11.5-r0) (66/71) Purging gdbm (1.23-r1) (67/71) Purging libffi (3.4.4-r3) (68/71) Purging libpanelw (6.4_p20230722-r0) (69/71) Purging mpdecimal (2.5.1-r2) (70/71) Purging readline (8.2.1-r2) (71/71) Purging sqlite-libs (3.43.1-r0) Executing busybox-1.36.1-r7.trigger OK: 379 MiB in 110 packages >>> py3-kallisto: Updating the community/x86 repository index... >>> py3-kallisto: Signing the index...