>>> py3-biopython: Building community/py3-biopython 1.85-r0 (using abuild 3.15.0_rc3-r1) started Thu, 24 Apr 2025 08:22:28 +0000
>>> py3-biopython: Validating /home/buildozer/aports/community/py3-biopython/APKBUILD...
>>> WARNING: py3-biopython: No maintainer
>>> py3-biopython: Analyzing dependencies...
>>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev
(1/32) Installing libquadmath (14.2.0-r5)
(2/32) Installing libgfortran (14.2.0-r5)
(3/32) Installing openblas (0.3.28-r0)
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(5/32) Installing libffi (3.4.8-r0)
(6/32) Installing gdbm (1.24-r0)
(7/32) Installing xz-libs (5.8.1-r0)
(8/32) Installing mpdecimal (4.0.0-r0)
(9/32) Installing libpanelw (6.5_p20250412-r0)
(10/32) Installing sqlite-libs (3.49.1-r0)
(11/32) Installing python3 (3.12.10-r0)
(12/32) Installing python3-pycache-pyc0 (3.12.10-r0)
(13/32) Installing pyc (3.12.10-r0)
(14/32) Installing py3-numpy-pyc (2.2.4-r0)
(15/32) Installing python3-pyc (3.12.10-r0)
(16/32) Installing py3-numpy (2.2.4-r0)
(17/32) Installing py3-numpy-tests (2.2.4-r0)
(18/32) Installing py3-installer (0.7.0-r2)
(19/32) Installing py3-installer-pyc (0.7.0-r2)
(20/32) Installing py3-gpep517 (16-r0)
(21/32) Installing py3-gpep517-pyc (16-r0)
(22/32) Installing py3-parsing (3.2.0-r0)
(23/32) Installing py3-parsing-pyc (3.2.0-r0)
(24/32) Installing py3-packaging (24.2-r0)
(25/32) Installing py3-packaging-pyc (24.2-r0)
(26/32) Installing py3-setuptools (77.0.3-r0)
(27/32) Installing py3-setuptools-pyc (77.0.3-r0)
(28/32) Installing py3-wheel (0.43.0-r0)
(29/32) Installing py3-wheel-pyc (0.43.0-r0)
(30/32) Installing py3-numpy-dev (2.2.4-r0)
(31/32) Installing python3-dev (3.12.10-r0)
(32/32) Installing .makedepends-py3-biopython (20250424.082229)
Executing busybox-1.37.0-r16.trigger
OK: 564 MiB in 138 packages
>>> py3-biopython: Cleaning up srcdir
>>> py3-biopython: Cleaning up pkgdir
>>> py3-biopython: Cleaning up tmpdir
>>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.85.tar.gz
Connecting to distfiles.alpinelinux.org (172.105.82.32:443)
wget: server returned error: HTTP/1.1 404 Not Found
>>> py3-biopython: Fetching https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.85.tar.gz
Connecting to files.pythonhosted.org (151.101.192.223:443)
Connecting to files.pythonhosted.org (151.101.192.223:443)
saving to '/var/cache/distfiles/edge/biopython-1.85.tar.gz.part'
biopython-1.85.tar.g 100% |********************************| 18.9M  0:00:00 ETA
'/var/cache/distfiles/edge/biopython-1.85.tar.gz.part' saved
>>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.85.tar.gz
>>> py3-biopython: Checking sha512sums...
biopython-1.85.tar.gz: OK
>>> py3-biopython: Unpacking /var/cache/distfiles/edge/biopython-1.85.tar.gz...
2025-04-24 08:22:32,308 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__
/usr/lib/python3.12/site-packages/setuptools/dist.py:760: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!

        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:

        License :: Freely Distributable

        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************

!!
  self._finalize_license_expression()
2025-04-24 08:22:32,331 root INFO running bdist_wheel
2025-04-24 08:22:32,346 root INFO running build
2025-04-24 08:22:32,346 root INFO running build_py
2025-04-24 08:22:32,349 root INFO creating build/lib.linux-x86_64-cpython-312/Bio
2025-04-24 08:22:32,350 root INFO copying Bio/File.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-24 08:22:32,350 root INFO copying Bio/MaxEntropy.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-24 08:22:32,350 root INFO copying Bio/_utils.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-24 08:22:32,351 root INFO copying Bio/pairwise2.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-24 08:22:32,351 root INFO copying Bio/kNN.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-24 08:22:32,351 root INFO copying Bio/Seq.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-24 08:22:32,352 root INFO copying Bio/bgzf.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-24 08:22:32,352 root INFO copying Bio/NaiveBayes.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-24 08:22:32,353 root INFO copying Bio/SeqFeature.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-24 08:22:32,353 root INFO copying Bio/MarkovModel.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-24 08:22:32,353 root INFO copying Bio/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-24 08:22:32,354 root INFO copying Bio/LogisticRegression.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-24 08:22:32,354 root INFO copying Bio/SeqRecord.py -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-24 08:22:32,354 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Affy
2025-04-24 08:22:32,354 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-x86_64-cpython-312/Bio/Affy
2025-04-24 08:22:32,355 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Affy
2025-04-24 08:22:32,355 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,355 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,356 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,356 root INFO copying Bio/Align/psl.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,356 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,357 root INFO copying Bio/Align/bed.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,357 root INFO copying Bio/Align/a2m.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,357 root INFO copying Bio/Align/mauve.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,357 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,358 root INFO copying Bio/Align/sam.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,358 root INFO copying Bio/Align/msf.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,358 root INFO copying Bio/Align/nexus.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,358 root INFO copying Bio/Align/phylip.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,359 root INFO copying Bio/Align/clustal.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,359 root INFO copying Bio/Align/emboss.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,359 root INFO copying Bio/Align/maf.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,359 root INFO copying Bio/Align/analysis.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,360 root INFO copying Bio/Align/chain.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,360 root INFO copying Bio/Align/tabular.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,360 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,361 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,361 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,361 root INFO copying Bio/Align/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,362 root INFO copying Bio/Align/hhr.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,362 root INFO copying Bio/Align/fasta.py -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,362 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Align/Applications
2025-04-24 08:22:32,362 root INFO copying Bio/Align/Applications/_Prank.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications
2025-04-24 08:22:32,363 root INFO copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications
2025-04-24 08:22:32,363 root INFO copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications
2025-04-24 08:22:32,363 root INFO copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications
2025-04-24 08:22:32,364 root INFO copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications
2025-04-24 08:22:32,364 root INFO copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications
2025-04-24 08:22:32,364 root INFO copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications
2025-04-24 08:22:32,364 root INFO copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications
2025-04-24 08:22:32,365 root INFO copying Bio/Align/Applications/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications
2025-04-24 08:22:32,365 root INFO copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/Applications
2025-04-24 08:22:32,365 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices
2025-04-24 08:22:32,365 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices
2025-04-24 08:22:32,366 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/AlignIO
2025-04-24 08:22:32,366 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO
2025-04-24 08:22:32,366 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO
2025-04-24 08:22:32,367 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO
2025-04-24 08:22:32,367 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO
2025-04-24 08:22:32,367 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO
2025-04-24 08:22:32,367 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO
2025-04-24 08:22:32,368 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO
2025-04-24 08:22:32,368 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO
2025-04-24 08:22:32,368 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO
2025-04-24 08:22:32,368 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO
2025-04-24 08:22:32,369 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-x86_64-cpython-312/Bio/AlignIO
2025-04-24 08:22:32,369 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Alphabet
2025-04-24 08:22:32,369 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Alphabet
2025-04-24 08:22:32,370 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Application
2025-04-24 08:22:32,370 root INFO copying Bio/Application/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Application
2025-04-24 08:22:32,370 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Blast
2025-04-24 08:22:32,370 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast
2025-04-24 08:22:32,371 root INFO copying Bio/Blast/Applications.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast
2025-04-24 08:22:32,371 root INFO copying Bio/Blast/_writers.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast
2025-04-24 08:22:32,371 root INFO copying Bio/Blast/_parser.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast
2025-04-24 08:22:32,371 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast
2025-04-24 08:22:32,372 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-x86_64-cpython-312/Bio/Blast
2025-04-24 08:22:32,372 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/CAPS
2025-04-24 08:22:32,372 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/CAPS
2025-04-24 08:22:32,373 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Cluster
2025-04-24 08:22:32,373 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Cluster
2025-04-24 08:22:32,373 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/codonalign
2025-04-24 08:22:32,373 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-x86_64-cpython-312/Bio/codonalign
2025-04-24 08:22:32,374 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-x86_64-cpython-312/Bio/codonalign
2025-04-24 08:22:32,374 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/codonalign
2025-04-24 08:22:32,374 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Compass
2025-04-24 08:22:32,374 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Compass
2025-04-24 08:22:32,375 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Data
2025-04-24 08:22:32,375 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-x86_64-cpython-312/Bio/Data
2025-04-24 08:22:32,375 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-x86_64-cpython-312/Bio/Data
2025-04-24 08:22:32,376 root INFO copying Bio/Data/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Data
2025-04-24 08:22:32,376 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-x86_64-cpython-312/Bio/Data
2025-04-24 08:22:32,376 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Emboss
2025-04-24 08:22:32,376 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-x86_64-cpython-312/Bio/Emboss
2025-04-24 08:22:32,377 root INFO copying Bio/Emboss/Applications.py -> build/lib.linux-x86_64-cpython-312/Bio/Emboss
2025-04-24 08:22:32,377 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-x86_64-cpython-312/Bio/Emboss
2025-04-24 08:22:32,377 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Emboss
2025-04-24 08:22:32,377 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Entrez
2025-04-24 08:22:32,378 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-x86_64-cpython-312/Bio/Entrez
2025-04-24 08:22:32,378 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Entrez
2025-04-24 08:22:32,378 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/ExPASy
2025-04-24 08:22:32,378 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy
2025-04-24 08:22:32,379 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy
2025-04-24 08:22:32,379 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy
2025-04-24 08:22:32,379 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy
2025-04-24 08:22:32,380 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy
2025-04-24 08:22:32,380 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/ExPASy
2025-04-24 08:22:32,380 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/GenBank
2025-04-24 08:22:32,380 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-x86_64-cpython-312/Bio/GenBank
2025-04-24 08:22:32,381 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-x86_64-cpython-312/Bio/GenBank
2025-04-24 08:22:32,381 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-x86_64-cpython-312/Bio/GenBank
2025-04-24 08:22:32,381 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/GenBank
2025-04-24 08:22:32,382 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Geo
2025-04-24 08:22:32,382 root INFO copying Bio/Geo/Record.py -> build/lib.linux-x86_64-cpython-312/Bio/Geo
2025-04-24 08:22:32,382 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Geo
2025-04-24 08:22:32,382 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Graphics
2025-04-24 08:22:32,383 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics
2025-04-24 08:22:32,383 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics
2025-04-24 08:22:32,383 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics
2025-04-24 08:22:32,383 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics
2025-04-24 08:22:32,384 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics
2025-04-24 08:22:32,384 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics
2025-04-24 08:22:32,384 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics
2025-04-24 08:22:32,385 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,385 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,385 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,385 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,386 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,386 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,386 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,386 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,387 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,387 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,387 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,388 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,388 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:32,388 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/HMM
2025-04-24 08:22:32,388 root INFO copying Bio/HMM/Trainer.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM
2025-04-24 08:22:32,389 root INFO copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM
2025-04-24 08:22:32,389 root INFO copying Bio/HMM/MarkovModel.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM
2025-04-24 08:22:32,389 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM
2025-04-24 08:22:32,389 root INFO copying Bio/HMM/Utilities.py -> build/lib.linux-x86_64-cpython-312/Bio/HMM
2025-04-24 08:22:32,390 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG
2025-04-24 08:22:32,390 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG
2025-04-24 08:22:32,390 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG
2025-04-24 08:22:32,391 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/Compound
2025-04-24 08:22:32,391 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/Compound
2025-04-24 08:22:32,391 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/Enzyme
2025-04-24 08:22:32,391 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/Enzyme
2025-04-24 08:22:32,392 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/Gene
2025-04-24 08:22:32,392 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/Gene
2025-04-24 08:22:32,392 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/Map
2025-04-24 08:22:32,392 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/Map
2025-04-24 08:22:32,393 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf
2025-04-24 08:22:32,393 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf
2025-04-24 08:22:32,393 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf
2025-04-24 08:22:32,393 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf
2025-04-24 08:22:32,394 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML
2025-04-24 08:22:32,394 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML
2025-04-24 08:22:32,394 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML
2025-04-24 08:22:32,395 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML
2025-04-24 08:22:32,395 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Medline
2025-04-24 08:22:32,395 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Medline
2025-04-24 08:22:32,395 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-24 08:22:32,396 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-24 08:22:32,396 root INFO copying Bio/motifs/meme.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-24 08:22:32,396 root INFO copying Bio/motifs/mast.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-24 08:22:32,396 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-24 08:22:32,397 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-24 08:22:32,397 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-24 08:22:32,397 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-24 08:22:32,397 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-24 08:22:32,398 root INFO copying Bio/motifs/xms.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-24 08:22:32,398 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-24 08:22:32,398 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-24 08:22:32,399 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/motifs/applications
2025-04-24 08:22:32,399 root INFO copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs/applications
2025-04-24 08:22:32,399 root INFO copying Bio/motifs/applications/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs/applications
2025-04-24 08:22:32,399 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar
2025-04-24 08:22:32,400 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar
2025-04-24 08:22:32,400 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar
2025-04-24 08:22:32,400 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Nexus
2025-04-24 08:22:32,400 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus
2025-04-24 08:22:32,401 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus
2025-04-24 08:22:32,401 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus
2025-04-24 08:22:32,401 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus
2025-04-24 08:22:32,402 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-x86_64-cpython-312/Bio/Nexus
2025-04-24 08:22:32,402 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/NMR
2025-04-24 08:22:32,402 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-x86_64-cpython-312/Bio/NMR
2025-04-24 08:22:32,402 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/NMR
2025-04-24 08:22:32,403 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-x86_64-cpython-312/Bio/NMR
2025-04-24 08:22:32,403 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Pathway
2025-04-24 08:22:32,403 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Pathway
2025-04-24 08:22:32,403 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep
2025-04-24 08:22:32,404 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep
2025-04-24 08:22:32,404 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep
2025-04-24 08:22:32,404 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep
2025-04-24 08:22:32,405 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,405 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,405 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,406 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,406 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,406 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,407 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,407 root INFO copying Bio/PDB/Model.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,407 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,407 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,408 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,408 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,408 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,408 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,409 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,409 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,409 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,409 root INFO copying Bio/PDB/PDBMLParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,410 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,410 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,410 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,411 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,411 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,411 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,411 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,412 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,412 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,412 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,413 root INFO copying Bio/PDB/alphafold_db.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,413 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,413 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,413 root INFO copying Bio/PDB/binary_cif.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,414 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,414 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,414 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,414 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,415 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,415 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,415 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,416 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,416 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,416 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/phenotype
2025-04-24 08:22:32,416 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-x86_64-cpython-312/Bio/phenotype
2025-04-24 08:22:32,417 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-x86_64-cpython-312/Bio/phenotype
2025-04-24 08:22:32,417 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/phenotype
2025-04-24 08:22:32,417 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/PopGen
2025-04-24 08:22:32,417 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen
2025-04-24 08:22:32,418 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop
2025-04-24 08:22:32,418 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop
2025-04-24 08:22:32,418 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop
2025-04-24 08:22:32,418 root INFO copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop
2025-04-24 08:22:32,419 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop
2025-04-24 08:22:32,419 root INFO copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop
2025-04-24 08:22:32,419 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Restriction
2025-04-24 08:22:32,420 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-x86_64-cpython-312/Bio/Restriction
2025-04-24 08:22:32,420 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-x86_64-cpython-312/Bio/Restriction
2025-04-24 08:22:32,421 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-x86_64-cpython-312/Bio/Restriction
2025-04-24 08:22:32,421 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Restriction
2025-04-24 08:22:32,421 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SCOP
2025-04-24 08:22:32,422 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP
2025-04-24 08:22:32,422 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP
2025-04-24 08:22:32,422 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP
2025-04-24 08:22:32,422 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP
2025-04-24 08:22:32,423 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP
2025-04-24 08:22:32,423 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP
2025-04-24 08:22:32,423 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-x86_64-cpython-312/Bio/SCOP
2025-04-24 08:22:32,424 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO
2025-04-24 08:22:32,424 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO
2025-04-24 08:22:32,424 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO
2025-04-24 08:22:32,424 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO
2025-04-24 08:22:32,425 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO
2025-04-24 08:22:32,425 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO
2025-04-24 08:22:32,425 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model
2025-04-24 08:22:32,425 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model
2025-04-24 08:22:32,426 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model
2025-04-24 08:22:32,426 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model
2025-04-24 08:22:32,426 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model
2025-04-24 08:22:32,427 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model
2025-04-24 08:22:32,427 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO
2025-04-24 08:22:32,427 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO
2025-04-24 08:22:32,427 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO
2025-04-24 08:22:32,428 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO
2025-04-24 08:22:32,428 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO
2025-04-24 08:22:32,428 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO
2025-04-24 08:22:32,429 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO
2025-04-24 08:22:32,429 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO
2025-04-24 08:22:32,429 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO
2025-04-24 08:22:32,429 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO
2025-04-24 08:22:32,430 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO
2025-04-24 08:22:32,430 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO
2025-04-24 08:22:32,430 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO
2025-04-24 08:22:32,430 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO
2025-04-24 08:22:32,431 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO
2025-04-24 08:22:32,431 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO
2025-04-24 08:22:32,431 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO
2025-04-24 08:22:32,432 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO
2025-04-24 08:22:32,432 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO
2025-04-24 08:22:32,432 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO
2025-04-24 08:22:32,432 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO
2025-04-24 08:22:32,433 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO
2025-04-24 08:22:32,433 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO
2025-04-24 08:22:32,433 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,434 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,434 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,434 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,434 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,435 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,435 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,435 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,436 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,436 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,436 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,436 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,437 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,437 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,437 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,437 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,438 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,438 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,438 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,439 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,439 root INFO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,439 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,439 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,440 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,440 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SeqUtils
2025-04-24 08:22:32,440 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils
2025-04-24 08:22:32,441 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils
2025-04-24 08:22:32,441 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils
2025-04-24 08:22:32,441 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils
2025-04-24 08:22:32,441 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils
2025-04-24 08:22:32,442 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils
2025-04-24 08:22:32,442 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SeqUtils
2025-04-24 08:22:32,442 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Sequencing
2025-04-24 08:22:32,442 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing
2025-04-24 08:22:32,443 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing
2025-04-24 08:22:32,443 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing
2025-04-24 08:22:32,443 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications
2025-04-24 08:22:32,444 root INFO copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications
2025-04-24 08:22:32,444 root INFO copying Bio/Sequencing/Applications/_bwa.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications
2025-04-24 08:22:32,444 root INFO copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications
2025-04-24 08:22:32,444 root INFO copying Bio/Sequencing/Applications/_samtools.py -> build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications
2025-04-24 08:22:32,445 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SVDSuperimposer
2025-04-24 08:22:32,445 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SVDSuperimposer
2025-04-24 08:22:32,445 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/SwissProt
2025-04-24 08:22:32,445 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/SwissProt
2025-04-24 08:22:32,446 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-x86_64-cpython-312/Bio/SwissProt
2025-04-24 08:22:32,446 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/TogoWS
2025-04-24 08:22:32,446 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/TogoWS
2025-04-24 08:22:32,447 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-24 08:22:32,447 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-24 08:22:32,447 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-24 08:22:32,447 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-24 08:22:32,448 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-24 08:22:32,448 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-24 08:22:32,448 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-24 08:22:32,449 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-24 08:22:32,449 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-24 08:22:32,449 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-24 08:22:32,449 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-24 08:22:32,450 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-24 08:22:32,450 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-24 08:22:32,450 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-24 08:22:32,450 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-24 08:22:32,451 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-24 08:22:32,451 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo
2025-04-24 08:22:32,451 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications
2025-04-24 08:22:32,452 root INFO copying Bio/Phylo/Applications/_Raxml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications
2025-04-24 08:22:32,452 root INFO copying Bio/Phylo/Applications/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications
2025-04-24 08:22:32,452 root INFO copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications
2025-04-24 08:22:32,452 root INFO copying Bio/Phylo/Applications/_Phyml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications
2025-04-24 08:22:32,453 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML
2025-04-24 08:22:32,453 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML
2025-04-24 08:22:32,453 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML
2025-04-24 08:22:32,453 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML
2025-04-24 08:22:32,454 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML
2025-04-24 08:22:32,454 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML
2025-04-24 08:22:32,454 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML
2025-04-24 08:22:32,455 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML
2025-04-24 08:22:32,455 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML
2025-04-24 08:22:32,455 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML
2025-04-24 08:22:32,455 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/UniGene
2025-04-24 08:22:32,456 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/UniGene
2025-04-24 08:22:32,456 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/UniProt
2025-04-24 08:22:32,456 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-x86_64-cpython-312/Bio/UniProt
2025-04-24 08:22:32,456 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-x86_64-cpython-312/Bio/UniProt
2025-04-24 08:22:32,457 root INFO creating build/lib.linux-x86_64-cpython-312/BioSQL
2025-04-24 08:22:32,457 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-x86_64-cpython-312/BioSQL
2025-04-24 08:22:32,457 root INFO copying BioSQL/Loader.py -> build/lib.linux-x86_64-cpython-312/BioSQL
2025-04-24 08:22:32,457 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-x86_64-cpython-312/BioSQL
2025-04-24 08:22:32,458 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-x86_64-cpython-312/BioSQL
2025-04-24 08:22:32,458 root INFO copying BioSQL/__init__.py -> build/lib.linux-x86_64-cpython-312/BioSQL
2025-04-24 08:22:32,458 root INFO running egg_info
2025-04-24 08:22:32,461 root INFO writing biopython.egg-info/PKG-INFO
2025-04-24 08:22:32,462 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt
2025-04-24 08:22:32,462 root INFO writing requirements to biopython.egg-info/requires.txt
2025-04-24 08:22:32,462 root INFO writing top-level names to biopython.egg-info/top_level.txt
2025-04-24 08:22:32,478 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt'
2025-04-24 08:22:32,518 root INFO reading manifest template 'MANIFEST.in'
2025-04-24 08:22:32,586 root WARNING warning: no previously-included files found matching 'Doc/_build'
2025-04-24 08:22:32,590 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip'
2025-04-24 08:22:32,593 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution
2025-04-24 08:22:32,596 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution
2025-04-24 08:22:32,598 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution
2025-04-24 08:22:32,600 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution
2025-04-24 08:22:32,606 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt'
2025-04-24 08:22:32,606 root INFO adding license file 'LICENSE'
2025-04-24 08:22:32,606 root INFO adding license file 'LICENSE.rst'
2025-04-24 08:22:32,636 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt'
/usr/lib/python3.12/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are
        already explicitly excluding 'Bio.Align.substitution_matrices.data' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
/usr/lib/python3.12/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'Bio.Entrez.DTDs' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'Bio.Entrez.DTDs' to be distributed and are
        already explicitly excluding 'Bio.Entrez.DTDs' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
/usr/lib/python3.12/site-packages/setuptools/command/build_py.py:212: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'Bio.Entrez.XSDs' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'Bio.Entrez.XSDs' to be distributed and are
        already explicitly excluding 'Bio.Entrez.XSDs' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
2025-04-24 08:22:32,663 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-24 08:22:32,663 root INFO copying Bio/py.typed -> build/lib.linux-x86_64-cpython-312/Bio
2025-04-24 08:22:32,664 root INFO copying Bio/Align/_aligncore.c -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,664 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,664 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,665 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,665 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,665 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,666 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,666 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,666 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,666 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,667 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,667 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,667 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,667 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,668 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,668 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,668 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,669 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,669 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,669 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,669 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,670 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,670 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,670 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,670 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,671 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,671 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,671 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,672 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
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2025-04-24 08:22:32,673 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data
2025-04-24 08:22:32,673 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-x86_64-cpython-312/Bio/Cluster
2025-04-24 08:22:32,674 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-x86_64-cpython-312/Bio/Cluster
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2025-04-24 08:22:32,674 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
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2025-04-24 08:22:32,751 root INFO copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:32,751 root INFO copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:32,751 root INFO copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:32,751 root INFO copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:32,752 root INFO copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:32,752 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:32,752 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:32,752 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:32,753 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:32,753 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:32,753 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:32,754 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:32,754 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:32,754 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:32,754 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:32,755 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:32,755 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:32,755 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:32,756 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:32,756 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:32,756 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:32,756 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs
2025-04-24 08:22:32,757 root INFO creating build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs
2025-04-24 08:22:32,757 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs
2025-04-24 08:22:32,757 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs
2025-04-24 08:22:32,757 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs
2025-04-24 08:22:32,758 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-x86_64-cpython-312/Bio/motifs
2025-04-24 08:22:32,758 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-x86_64-cpython-312/Bio/Nexus
2025-04-24 08:22:32,758 root INFO copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,758 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,759 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:32,759 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:32,759 root INFO copying BioSQL/py.typed -> build/lib.linux-x86_64-cpython-312/BioSQL
2025-04-24 08:22:32,766 root INFO running build_ext
2025-04-24 08:22:32,767 root INFO building 'Bio.Align._codonaligner' extension
2025-04-24 08:22:32,768 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/Align
2025-04-24 08:22:32,768 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Align/_codonaligner.c -o build/temp.linux-x86_64-cpython-312/Bio/Align/_codonaligner.o
2025-04-24 08:22:33,316 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/Align/_codonaligner.cpython-312-x86_64-linux-musl.so
2025-04-24 08:22:33,333 root INFO building 'Bio.Align._pairwisealigner' extension
2025-04-24 08:22:33,333 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.o
2025-04-24 08:22:39,905 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-x86_64-linux-musl.so
2025-04-24 08:22:39,925 root INFO building 'Bio.Align._aligncore' extension
2025-04-24 08:22:39,925 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Align/_aligncore.c -o build/temp.linux-x86_64-cpython-312/Bio/Align/_aligncore.o
2025-04-24 08:22:40,184 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/Align/_aligncore.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/Align/_aligncore.cpython-312-x86_64-linux-musl.so
2025-04-24 08:22:40,200 root INFO building 'Bio.cpairwise2' extension
2025-04-24 08:22:40,201 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.linux-x86_64-cpython-312/Bio/cpairwise2module.o
2025-04-24 08:22:40,524 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/cpairwise2.cpython-312-x86_64-linux-musl.so
2025-04-24 08:22:40,541 root INFO building 'Bio.Nexus.cnexus' extension
2025-04-24 08:22:40,542 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/Nexus
2025-04-24 08:22:40,542 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.linux-x86_64-cpython-312/Bio/Nexus/cnexus.o
2025-04-24 08:22:40,701 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/Nexus/cnexus.cpython-312-x86_64-linux-musl.so
2025-04-24 08:22:40,717 root INFO building 'Bio.motifs._pwm' extension
2025-04-24 08:22:40,717 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/motifs
2025-04-24 08:22:40,718 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.linux-x86_64-cpython-312/Bio/motifs/_pwm.o
2025-04-24 08:22:40,883 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/motifs/_pwm.cpython-312-x86_64-linux-musl.so
2025-04-24 08:22:40,899 root INFO building 'Bio.Cluster._cluster' extension
2025-04-24 08:22:40,900 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/Cluster
2025-04-24 08:22:40,901 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.linux-x86_64-cpython-312/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY
2025-04-24 08:22:43,071 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.linux-x86_64-cpython-312/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY
2025-04-24 08:22:43,777 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/Cluster/cluster.o build/temp.linux-x86_64-cpython-312/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/Cluster/_cluster.cpython-312-x86_64-linux-musl.so
2025-04-24 08:22:43,799 root INFO building 'Bio.PDB.ccealign' extension
2025-04-24 08:22:43,799 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/PDB
2025-04-24 08:22:43,800 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-x86_64-cpython-312/Bio/PDB/ccealignmodule.o
2025-04-24 08:22:44,138 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/PDB/ccealign.cpython-312-x86_64-linux-musl.so
2025-04-24 08:22:44,156 root INFO building 'Bio.PDB.kdtrees' extension
2025-04-24 08:22:44,157 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.linux-x86_64-cpython-312/Bio/PDB/kdtrees.o
2025-04-24 08:22:44,597 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/PDB/kdtrees.cpython-312-x86_64-linux-musl.so
2025-04-24 08:22:44,616 root INFO building 'Bio.PDB._bcif_helper' extension
2025-04-24 08:22:44,617 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-x86_64-cpython-312/Bio/PDB/bcifhelpermodule.o
2025-04-24 08:22:44,795 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/PDB/bcifhelpermodule.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/PDB/_bcif_helper.cpython-312-x86_64-linux-musl.so
2025-04-24 08:22:44,812 root INFO building 'Bio.SeqIO._twoBitIO' extension
2025-04-24 08:22:44,813 root INFO creating build/temp.linux-x86_64-cpython-312/Bio/SeqIO
2025-04-24 08:22:44,813 root INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt -fPIC -I/usr/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.o
2025-04-24 08:22:45,022 root INFO cc -shared -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security -fno-plt build/temp.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-x86_64-linux-musl.so
2025-04-24 08:22:45,054 root INFO installing to build/bdist.linux-x86_64/wheel
2025-04-24 08:22:45,054 root INFO running install
2025-04-24 08:22:45,077 root INFO running install_lib
2025-04-24 08:22:45,085 root INFO creating build/bdist.linux-x86_64/wheel
2025-04-24 08:22:45,086 root INFO creating build/bdist.linux-x86_64/wheel/BioSQL
2025-04-24 08:22:45,086 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/BioSeqDatabase.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2025-04-24 08:22:45,087 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/Loader.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2025-04-24 08:22:45,087 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/BioSeq.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2025-04-24 08:22:45,088 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/py.typed -> build/bdist.linux-x86_64/wheel/./BioSQL
2025-04-24 08:22:45,088 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/DBUtils.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2025-04-24 08:22:45,088 root INFO copying build/lib.linux-x86_64-cpython-312/BioSQL/__init__.py -> build/bdist.linux-x86_64/wheel/./BioSQL
2025-04-24 08:22:45,089 root INFO creating build/bdist.linux-x86_64/wheel/Bio
2025-04-24 08:22:45,090 root INFO creating build/bdist.linux-x86_64/wheel/Bio/phenotype
2025-04-24 08:22:45,090 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/phenotype/pm_fitting.py -> build/bdist.linux-x86_64/wheel/./Bio/phenotype
2025-04-24 08:22:45,090 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/phenotype/phen_micro.py -> build/bdist.linux-x86_64/wheel/./Bio/phenotype
2025-04-24 08:22:45,091 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/phenotype/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/phenotype
2025-04-24 08:22:45,091 root INFO creating build/bdist.linux-x86_64/wheel/Bio/motifs
2025-04-24 08:22:45,092 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/transfac.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-24 08:22:45,092 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/_pwm.c -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-24 08:22:45,093 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/meme.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-24 08:22:45,093 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/mast.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-24 08:22:45,093 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/_pwm.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-24 08:22:45,094 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/alignace.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-24 08:22:45,094 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/thresholds.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-24 08:22:45,094 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/clusterbuster.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-24 08:22:45,095 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/minimal.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-24 08:22:45,095 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/matrix.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-24 08:22:45,096 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/xms.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-24 08:22:45,096 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-24 08:22:45,097 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/pfm.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs
2025-04-24 08:22:45,097 root INFO creating build/bdist.linux-x86_64/wheel/Bio/motifs/jaspar
2025-04-24 08:22:45,098 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar/db.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs/jaspar
2025-04-24 08:22:45,098 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs/jaspar
2025-04-24 08:22:45,098 root INFO creating build/bdist.linux-x86_64/wheel/Bio/motifs/applications
2025-04-24 08:22:45,099 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/applications/_xxmotif.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs/applications
2025-04-24 08:22:45,099 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/motifs/applications/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/motifs/applications
2025-04-24 08:22:45,099 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/File.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-24 08:22:45,100 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Medline
2025-04-24 08:22:45,100 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Medline/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Medline
2025-04-24 08:22:45,101 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/MaxEntropy.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-24 08:22:45,101 root INFO creating build/bdist.linux-x86_64/wheel/Bio/HMM
2025-04-24 08:22:45,101 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/Trainer.py -> build/bdist.linux-x86_64/wheel/./Bio/HMM
2025-04-24 08:22:45,102 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/DynamicProgramming.py -> build/bdist.linux-x86_64/wheel/./Bio/HMM
2025-04-24 08:22:45,102 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/MarkovModel.py -> build/bdist.linux-x86_64/wheel/./Bio/HMM
2025-04-24 08:22:45,102 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/HMM
2025-04-24 08:22:45,103 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/HMM/Utilities.py -> build/bdist.linux-x86_64/wheel/./Bio/HMM
2025-04-24 08:22:45,103 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/_utils.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-24 08:22:45,103 root INFO creating build/bdist.linux-x86_64/wheel/Bio/CAPS
2025-04-24 08:22:45,104 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/CAPS/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/CAPS
2025-04-24 08:22:45,104 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Cluster
2025-04-24 08:22:45,104 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/cluster.h -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2025-04-24 08:22:45,105 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/_cluster.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2025-04-24 08:22:45,105 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/clustermodule.c -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2025-04-24 08:22:45,106 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2025-04-24 08:22:45,106 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Cluster/cluster.c -> build/bdist.linux-x86_64/wheel/./Bio/Cluster
2025-04-24 08:22:45,107 root INFO creating build/bdist.linux-x86_64/wheel/Bio/UniProt
2025-04-24 08:22:45,107 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/UniProt/GOA.py -> build/bdist.linux-x86_64/wheel/./Bio/UniProt
2025-04-24 08:22:45,107 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/UniProt/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/UniProt
2025-04-24 08:22:45,108 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SVDSuperimposer
2025-04-24 08:22:45,108 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SVDSuperimposer
2025-04-24 08:22:45,108 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Application
2025-04-24 08:22:45,109 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Application/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Application
2025-04-24 08:22:45,109 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Nexus
2025-04-24 08:22:45,109 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/cnexus.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2025-04-24 08:22:45,110 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/Nexus.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2025-04-24 08:22:45,110 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/Trees.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2025-04-24 08:22:45,111 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/StandardData.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2025-04-24 08:22:45,111 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/cnexus.c -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2025-04-24 08:22:45,111 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2025-04-24 08:22:45,111 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Nexus/Nodes.py -> build/bdist.linux-x86_64/wheel/./Bio/Nexus
2025-04-24 08:22:45,112 root INFO creating build/bdist.linux-x86_64/wheel/Bio/ExPASy
2025-04-24 08:22:45,112 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2025-04-24 08:22:45,112 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/Prodoc.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2025-04-24 08:22:45,113 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2025-04-24 08:22:45,113 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/Enzyme.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2025-04-24 08:22:45,113 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/Prosite.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2025-04-24 08:22:45,114 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/ExPASy/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/ExPASy
2025-04-24 08:22:45,114 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Restriction
2025-04-24 08:22:45,114 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction
2025-04-24 08:22:45,115 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Restriction/PrintFormat.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction
2025-04-24 08:22:45,116 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Restriction/Restriction.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction
2025-04-24 08:22:45,116 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Restriction/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Restriction
2025-04-24 08:22:45,116 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SeqIO
2025-04-24 08:22:45,117 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,117 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/GckIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,117 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,118 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,118 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/PdbIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,118 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,119 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,119 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/AceIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,119 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,119 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/PirIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,120 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/IgIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,120 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/_index.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,120 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/SffIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,120 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,121 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/NibIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,121 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/AbiIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,121 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,122 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,122 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/PhdIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,122 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,123 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/GfaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,123 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/SwissIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,123 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/TabIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,123 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,124 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqIO/QualityIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqIO
2025-04-24 08:22:45,124 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Pathway
2025-04-24 08:22:45,124 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Pathway/Rep
2025-04-24 08:22:45,125 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway/Rep
2025-04-24 08:22:45,125 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway/Rep
2025-04-24 08:22:45,125 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway/Rep
2025-04-24 08:22:45,126 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Pathway/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Pathway
2025-04-24 08:22:45,126 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez
2025-04-24 08:22:45,126 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez/DTDs
2025-04-24 08:22:45,127 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,127 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,127 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,127 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,128 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,128 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,128 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,129 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,129 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eSearch_020511.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,129 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,129 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,130 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,130 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,130 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,130 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,131 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,131 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,131 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,131 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,132 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,132 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,132 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,132 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,133 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,133 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,133 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,133 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,134 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,134 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,134 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,134 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,135 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,135 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,135 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,135 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,136 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,136 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,136 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,136 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,136 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,137 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,137 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,137 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,138 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isomfrk.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,138 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,138 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,138 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,139 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,139 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,139 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,139 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/articlemeta.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,140 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,140 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,140 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,140 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,140 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,141 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,141 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,141 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,141 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,142 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,142 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,142 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,142 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,142 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,143 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,143 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,143 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,143 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,144 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,144 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,144 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,144 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,144 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,145 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,145 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:45,145 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,146 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,146 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,146 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,146 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,147 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,147 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,147 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,147 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,148 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,148 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,148 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,148 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,148 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,149 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,149 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isodia.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:45,149 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,149 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,150 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,150 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,150 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,150 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,151 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,151 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,151 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,151 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,151 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,152 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,152 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,152 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,152 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,153 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,153 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,153 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:45,153 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,154 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_020114.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,154 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_140101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,154 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,154 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,154 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,155 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,155 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,155 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,155 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,156 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,156 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:45,157 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,157 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,157 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:45,158 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:45,158 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,158 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,158 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,159 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,159 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:45,159 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,159 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,160 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,160 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,160 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:45,160 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,161 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,161 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,161 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,161 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,162 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:45,162 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,162 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:45,163 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,163 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,163 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,163 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,164 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,164 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,164 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,164 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,164 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,165 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,165 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,165 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,165 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,166 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,166 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,166 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,166 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,167 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-list1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,167 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,167 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,167 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,167 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,167 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,168 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,168 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,168 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/esearch.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,168 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,169 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,169 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,169 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,169 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,169 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,170 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,170 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,170 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,170 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,170 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,171 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_190101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,171 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,171 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,171 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,171 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,172 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,172 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,172 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,172 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,173 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,173 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/section.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,173 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,173 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,173 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,174 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,174 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,174 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,174 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,174 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,175 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,175 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,175 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,175 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,175 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,176 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,176 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,176 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,176 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,176 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,177 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,177 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,177 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,177 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:45,178 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,178 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,178 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,178 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,179 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,179 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,179 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,179 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PDB_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,179 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,180 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,180 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,180 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,180 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,180 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,181 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,181 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,181 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,181 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,181 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,181 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,182 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,182 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,182 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,182 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,182 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,183 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,183 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,183 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,183 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/list.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,184 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,184 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,184 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:45,185 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,185 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-math1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,185 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,185 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
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2025-04-24 08:22:45,186 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,186 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,186 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,186 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,186 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,187 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,187 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,187 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,187 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,187 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,188 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,188 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,188 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,188 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,188 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,189 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,189 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,189 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,189 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,189 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,190 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,190 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/DTDs
2025-04-24 08:22:45,190 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Entrez/XSDs
2025-04-24 08:22:45,190 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/XSDs
2025-04-24 08:22:45,191 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/XSDs
2025-04-24 08:22:45,191 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-x86_64/wheel/./Bio/Entrez/XSDs
2025-04-24 08:22:45,191 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/Parser.py -> build/bdist.linux-x86_64/wheel/./Bio/Entrez
2025-04-24 08:22:45,191 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Entrez/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Entrez
2025-04-24 08:22:45,191 root INFO creating build/bdist.linux-x86_64/wheel/Bio/UniGene
2025-04-24 08:22:45,192 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/UniGene/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/UniGene
2025-04-24 08:22:45,192 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/cpairwise2module.c -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-24 08:22:45,192 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/pairwise2.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-24 08:22:45,192 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/kNN.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-24 08:22:45,192 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/cpairwise2.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-24 08:22:45,193 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align
2025-04-24 08:22:45,193 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/bigmaf.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,193 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/bigbed.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,193 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/psl.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,194 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_aligncore.c -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,194 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/exonerate.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,194 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/bed.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,194 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/a2m.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,194 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/mauve.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,195 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/interfaces.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,195 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/sam.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,195 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/msf.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,195 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_aligncore.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,195 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_codonaligner.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,196 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/nexus.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,196 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/phylip.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,196 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/clustal.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,196 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/emboss.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,196 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/maf.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,197 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align/Applications
2025-04-24 08:22:45,197 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Prank.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/Applications
2025-04-24 08:22:45,197 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Dialign.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/Applications
2025-04-24 08:22:45,197 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Mafft.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/Applications
2025-04-24 08:22:45,197 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_TCoffee.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/Applications
2025-04-24 08:22:45,198 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Muscle.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/Applications
2025-04-24 08:22:45,198 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Clustalw.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/Applications
2025-04-24 08:22:45,198 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_Probcons.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/Applications
2025-04-24 08:22:45,198 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_ClustalOmega.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/Applications
2025-04-24 08:22:45,198 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/Applications
2025-04-24 08:22:45,198 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/Applications/_MSAProbs.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/Applications
2025-04-24 08:22:45,199 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_codonaligner.c -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,199 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/analysis.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,199 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.c -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,200 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/chain.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,200 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/tabular.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,200 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/stockholm.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,200 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/AlignInfo.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,200 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/bigpsl.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,201 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,201 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/hhr.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,201 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices
2025-04-24 08:22:45,201 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,202 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,202 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,202 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,202 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,202 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,203 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,203 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,203 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,203 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,203 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,203 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,204 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,204 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,204 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,204 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,204 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,204 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,205 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,205 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,205 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,205 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,205 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,205 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,206 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,206 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,206 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,206 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,206 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,207 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,207 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices/data
2025-04-24 08:22:45,207 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Align/substitution_matrices
2025-04-24 08:22:45,207 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/fasta.py -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,207 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/Align
2025-04-24 08:22:45,208 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Seq.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-24 08:22:45,208 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SeqUtils
2025-04-24 08:22:45,208 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2025-04-24 08:22:45,208 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/lcc.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2025-04-24 08:22:45,209 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2025-04-24 08:22:45,209 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2025-04-24 08:22:45,209 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2025-04-24 08:22:45,209 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2025-04-24 08:22:45,210 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqUtils/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SeqUtils
2025-04-24 08:22:45,210 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/bgzf.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-24 08:22:45,210 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Sequencing
2025-04-24 08:22:45,210 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Ace.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing
2025-04-24 08:22:45,210 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Phd.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing
2025-04-24 08:22:45,211 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Sequencing/Applications
2025-04-24 08:22:45,211 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications/_Novoalign.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing/Applications
2025-04-24 08:22:45,211 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications/_bwa.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing/Applications
2025-04-24 08:22:45,211 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing/Applications
2025-04-24 08:22:45,212 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/Applications/_samtools.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing/Applications
2025-04-24 08:22:45,212 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Sequencing/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Sequencing
2025-04-24 08:22:45,212 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Compass
2025-04-24 08:22:45,212 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Compass/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Compass
2025-04-24 08:22:45,212 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Alphabet
2025-04-24 08:22:45,213 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Alphabet/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Alphabet
2025-04-24 08:22:45,213 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Graphics
2025-04-24 08:22:45,213 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/KGML_vis.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2025-04-24 08:22:45,213 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/Distribution.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2025-04-24 08:22:45,213 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2025-04-24 08:22:45,214 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2025-04-24 08:22:45,214 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/Comparative.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2025-04-24 08:22:45,214 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2025-04-24 08:22:45,214 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics
2025-04-24 08:22:45,215 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Graphics/GenomeDiagram
2025-04-24 08:22:45,215 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2025-04-24 08:22:45,215 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2025-04-24 08:22:45,215 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2025-04-24 08:22:45,215 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2025-04-24 08:22:45,215 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2025-04-24 08:22:45,216 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2025-04-24 08:22:45,216 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2025-04-24 08:22:45,216 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2025-04-24 08:22:45,216 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2025-04-24 08:22:45,217 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2025-04-24 08:22:45,217 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2025-04-24 08:22:45,217 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-x86_64/wheel/./Bio/Graphics/GenomeDiagram
2025-04-24 08:22:45,217 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/NaiveBayes.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-24 08:22:45,217 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Geo
2025-04-24 08:22:45,218 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Geo/Record.py -> build/bdist.linux-x86_64/wheel/./Bio/Geo
2025-04-24 08:22:45,218 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Geo/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Geo
2025-04-24 08:22:45,218 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Blast
2025-04-24 08:22:45,218 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/NCBIXML.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2025-04-24 08:22:45,218 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/Applications.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2025-04-24 08:22:45,219 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/_writers.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2025-04-24 08:22:45,219 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/_parser.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2025-04-24 08:22:45,219 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2025-04-24 08:22:45,219 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Blast/NCBIWWW.py -> build/bdist.linux-x86_64/wheel/./Bio/Blast
2025-04-24 08:22:45,220 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PDB
2025-04-24 08:22:45,220 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,220 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/MMCIFParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,220 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PDBIO.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,221 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/kdtrees.c -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,221 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PDBExceptions.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,221 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PDB/mmtf
2025-04-24 08:22:45,221 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB/mmtf
2025-04-24 08:22:45,222 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB/mmtf
2025-04-24 08:22:45,222 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB/mmtf
2025-04-24 08:22:45,222 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/vectors.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,222 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ic_rebuild.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,222 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,223 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ic_data.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,223 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ccealignmodule.c -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,223 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Model.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,223 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ccealign.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,223 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Chain.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,224 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Superimposer.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,224 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/cealign.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,224 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Atom.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,224 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/HSExposure.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,224 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/FragmentMapper.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,225 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/SASA.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,225 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/mmcifio.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,225 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/StructureBuilder.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,225 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PDBMLParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,225 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PICIO.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,226 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/StructureAlignment.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,226 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/NeighborSearch.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,226 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PSEA.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,226 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/qcprot.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,226 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Selection.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,227 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/internal_coords.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,227 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Entity.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,227 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Polypeptide.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,227 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PDBParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,227 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/alphafold_db.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,228 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Dice.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,228 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Residue.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,228 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/binary_cif.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,228 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,228 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/ResidueDepth.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,229 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/DSSP.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,229 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/NACCESS.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,229 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/Structure.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,229 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/SCADIO.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,229 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,230 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,230 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/kdtrees.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,230 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/PDBList.py -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,230 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PDB/_bcif_helper.cpython-312-x86_64-linux-musl.so -> build/bdist.linux-x86_64/wheel/./Bio/PDB
2025-04-24 08:22:45,230 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Emboss
2025-04-24 08:22:45,231 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Emboss/Primer3.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss
2025-04-24 08:22:45,231 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Emboss/Applications.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss
2025-04-24 08:22:45,231 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss
2025-04-24 08:22:45,231 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Emboss/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Emboss
2025-04-24 08:22:45,231 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/py.typed -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-24 08:22:45,232 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqFeature.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-24 08:22:45,232 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SwissProt
2025-04-24 08:22:45,232 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SwissProt/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SwissProt
2025-04-24 08:22:45,232 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SwissProt/KeyWList.py -> build/bdist.linux-x86_64/wheel/./Bio/SwissProt
2025-04-24 08:22:45,232 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/MarkovModel.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-24 08:22:45,233 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PopGen
2025-04-24 08:22:45,233 root INFO creating build/bdist.linux-x86_64/wheel/Bio/PopGen/GenePop
2025-04-24 08:22:45,233 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop
2025-04-24 08:22:45,233 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop
2025-04-24 08:22:45,234 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/Controller.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop
2025-04-24 08:22:45,234 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop
2025-04-24 08:22:45,234 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/GenePop/EasyController.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen/GenePop
2025-04-24 08:22:45,234 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/PopGen/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/PopGen
2025-04-24 08:22:45,234 root INFO creating build/bdist.linux-x86_64/wheel/Bio/NMR
2025-04-24 08:22:45,235 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/NMR/xpktools.py -> build/bdist.linux-x86_64/wheel/./Bio/NMR
2025-04-24 08:22:45,235 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/NMR/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/NMR
2025-04-24 08:22:45,235 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/NMR/NOEtools.py -> build/bdist.linux-x86_64/wheel/./Bio/NMR
2025-04-24 08:22:45,235 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-24 08:22:45,235 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/LogisticRegression.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-24 08:22:45,236 root INFO creating build/bdist.linux-x86_64/wheel/Bio/codonalign
2025-04-24 08:22:45,236 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/codonalign/codonseq.py -> build/bdist.linux-x86_64/wheel/./Bio/codonalign
2025-04-24 08:22:45,236 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/codonalign/codonalignment.py -> build/bdist.linux-x86_64/wheel/./Bio/codonalign
2025-04-24 08:22:45,236 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/codonalign/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/codonalign
2025-04-24 08:22:45,236 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Affy
2025-04-24 08:22:45,237 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Affy/CelFile.py -> build/bdist.linux-x86_64/wheel/./Bio/Affy
2025-04-24 08:22:45,237 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Affy/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Affy
2025-04-24 08:22:45,237 root INFO creating build/bdist.linux-x86_64/wheel/Bio/GenBank
2025-04-24 08:22:45,237 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/GenBank/Scanner.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank
2025-04-24 08:22:45,238 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/GenBank/Record.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank
2025-04-24 08:22:45,238 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/GenBank/utils.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank
2025-04-24 08:22:45,238 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/GenBank/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/GenBank
2025-04-24 08:22:45,238 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Phylo
2025-04-24 08:22:45,238 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/CDAO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-24 08:22:45,239 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/_utils.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-24 08:22:45,239 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PhyloXML.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-24 08:22:45,239 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-24 08:22:45,239 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-24 08:22:45,240 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/NewickIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-24 08:22:45,240 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-24 08:22:45,240 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/BaseTree.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-24 08:22:45,240 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/CDAOIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-24 08:22:45,240 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Consensus.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-24 08:22:45,241 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-24 08:22:45,241 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Phylo/Applications
2025-04-24 08:22:45,241 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications/_Raxml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/Applications
2025-04-24 08:22:45,241 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/Applications
2025-04-24 08:22:45,241 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications/_Fasttree.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/Applications
2025-04-24 08:22:45,242 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Applications/_Phyml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/Applications
2025-04-24 08:22:45,242 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/_io.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-24 08:22:45,242 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/Newick.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-24 08:22:45,242 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Phylo/PAML
2025-04-24 08:22:45,242 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2025-04-24 08:22:45,243 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2025-04-24 08:22:45,243 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2025-04-24 08:22:45,243 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2025-04-24 08:22:45,243 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2025-04-24 08:22:45,243 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2025-04-24 08:22:45,243 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2025-04-24 08:22:45,244 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2025-04-24 08:22:45,244 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo/PAML
2025-04-24 08:22:45,244 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-24 08:22:45,244 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/NexusIO.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-24 08:22:45,244 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Phylo/NeXML.py -> build/bdist.linux-x86_64/wheel/./Bio/Phylo
2025-04-24 08:22:45,245 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SCOP
2025-04-24 08:22:45,245 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Raf.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2025-04-24 08:22:45,245 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Cla.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2025-04-24 08:22:45,245 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Dom.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2025-04-24 08:22:45,245 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Hie.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2025-04-24 08:22:45,246 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Des.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2025-04-24 08:22:45,246 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2025-04-24 08:22:45,246 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SCOP/Residues.py -> build/bdist.linux-x86_64/wheel/./Bio/SCOP
2025-04-24 08:22:45,246 root INFO creating build/bdist.linux-x86_64/wheel/Bio/Data
2025-04-24 08:22:45,246 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Data/IUPACData.py -> build/bdist.linux-x86_64/wheel/./Bio/Data
2025-04-24 08:22:45,247 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Data/PDBData.py -> build/bdist.linux-x86_64/wheel/./Bio/Data
2025-04-24 08:22:45,247 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Data/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/Data
2025-04-24 08:22:45,247 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/Data/CodonTable.py -> build/bdist.linux-x86_64/wheel/./Bio/Data
2025-04-24 08:22:45,247 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SeqRecord.py -> build/bdist.linux-x86_64/wheel/./Bio
2025-04-24 08:22:45,248 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO
2025-04-24 08:22:45,248 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO
2025-04-24 08:22:45,248 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/_model
2025-04-24 08:22:45,248 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2025-04-24 08:22:45,248 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/hit.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2025-04-24 08:22:45,249 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2025-04-24 08:22:45,249 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/query.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2025-04-24 08:22:45,249 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_model/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/_model
2025-04-24 08:22:45,249 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HmmerIO
2025-04-24 08:22:45,249 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2025-04-24 08:22:45,250 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2025-04-24 08:22:45,250 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2025-04-24 08:22:45,250 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2025-04-24 08:22:45,250 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2025-04-24 08:22:45,250 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HmmerIO
2025-04-24 08:22:45,251 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_utils.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO
2025-04-24 08:22:45,251 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/_index.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO
2025-04-24 08:22:45,251 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/ExonerateIO
2025-04-24 08:22:45,251 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2025-04-24 08:22:45,251 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2025-04-24 08:22:45,252 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2025-04-24 08:22:45,252 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2025-04-24 08:22:45,252 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/ExonerateIO
2025-04-24 08:22:45,252 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/HHsuiteIO
2025-04-24 08:22:45,252 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HHsuiteIO
2025-04-24 08:22:45,253 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/HHsuiteIO
2025-04-24 08:22:45,253 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO
2025-04-24 08:22:45,253 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/BlastIO
2025-04-24 08:22:45,253 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/BlastIO
2025-04-24 08:22:45,253 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/BlastIO
2025-04-24 08:22:45,254 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/BlastIO
2025-04-24 08:22:45,254 root INFO creating build/bdist.linux-x86_64/wheel/Bio/SearchIO/InterproscanIO
2025-04-24 08:22:45,254 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InterproscanIO
2025-04-24 08:22:45,254 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO/InterproscanIO
2025-04-24 08:22:45,254 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/SearchIO/BlatIO.py -> build/bdist.linux-x86_64/wheel/./Bio/SearchIO
2025-04-24 08:22:45,255 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG
2025-04-24 08:22:45,255 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Gene
2025-04-24 08:22:45,255 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/Gene
2025-04-24 08:22:45,255 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/KGML
2025-04-24 08:22:45,256 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/KGML
2025-04-24 08:22:45,256 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/KGML
2025-04-24 08:22:45,256 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/KGML
2025-04-24 08:22:45,256 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Enzyme
2025-04-24 08:22:45,256 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/Enzyme
2025-04-24 08:22:45,257 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/REST.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG
2025-04-24 08:22:45,257 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Compound
2025-04-24 08:22:45,257 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/Compound
2025-04-24 08:22:45,257 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG
2025-04-24 08:22:45,257 root INFO creating build/bdist.linux-x86_64/wheel/Bio/KEGG/Map
2025-04-24 08:22:45,258 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/KEGG/Map/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/KEGG/Map
2025-04-24 08:22:45,258 root INFO creating build/bdist.linux-x86_64/wheel/Bio/AlignIO
2025-04-24 08:22:45,258 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/FastaIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2025-04-24 08:22:45,258 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/MafIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2025-04-24 08:22:45,259 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/MauveIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2025-04-24 08:22:45,259 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/Interfaces.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2025-04-24 08:22:45,259 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2025-04-24 08:22:45,259 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2025-04-24 08:22:45,259 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2025-04-24 08:22:45,260 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/NexusIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2025-04-24 08:22:45,260 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2025-04-24 08:22:45,260 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/MsfIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2025-04-24 08:22:45,260 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-x86_64/wheel/./Bio/AlignIO
2025-04-24 08:22:45,260 root INFO creating build/bdist.linux-x86_64/wheel/Bio/TogoWS
2025-04-24 08:22:45,260 root INFO copying build/lib.linux-x86_64-cpython-312/Bio/TogoWS/__init__.py -> build/bdist.linux-x86_64/wheel/./Bio/TogoWS
2025-04-24 08:22:45,261 root INFO running install_egg_info
2025-04-24 08:22:45,265 root INFO Copying biopython.egg-info to build/bdist.linux-x86_64/wheel/./biopython-1.85-py3.12.egg-info
2025-04-24 08:22:45,266 root INFO running install_scripts
2025-04-24 08:22:45,273 root INFO creating build/bdist.linux-x86_64/wheel/biopython-1.85.dist-info/WHEEL
2025-04-24 08:22:45,273 wheel INFO creating '/home/buildozer/aports/community/py3-biopython/src/biopython-1.85/.dist/.tmp-j8mkd6_c/biopython-1.85-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
2025-04-24 08:22:45,274 wheel INFO adding 'Bio/File.py'
2025-04-24 08:22:45,274 wheel INFO adding 'Bio/LogisticRegression.py'
2025-04-24 08:22:45,274 wheel INFO adding 'Bio/MarkovModel.py'
2025-04-24 08:22:45,275 wheel INFO adding 'Bio/MaxEntropy.py'
2025-04-24 08:22:45,275 wheel INFO adding 'Bio/NaiveBayes.py'
2025-04-24 08:22:45,275 wheel INFO adding 'Bio/Seq.py'
2025-04-24 08:22:45,276 wheel INFO adding 'Bio/SeqFeature.py'
2025-04-24 08:22:45,277 wheel INFO adding 'Bio/SeqRecord.py'
2025-04-24 08:22:45,277 wheel INFO adding 'Bio/__init__.py'
2025-04-24 08:22:45,277 wheel INFO adding 'Bio/_utils.py'
2025-04-24 08:22:45,277 wheel INFO adding 'Bio/bgzf.py'
2025-04-24 08:22:45,278 wheel INFO adding 'Bio/cpairwise2.cpython-312-x86_64-linux-musl.so'
2025-04-24 08:22:45,278 wheel INFO adding 'Bio/cpairwise2module.c'
2025-04-24 08:22:45,278 wheel INFO adding 'Bio/kNN.py'
2025-04-24 08:22:45,279 wheel INFO adding 'Bio/pairwise2.py'
2025-04-24 08:22:45,279 wheel INFO adding 'Bio/py.typed'
2025-04-24 08:22:45,280 wheel INFO adding 'Bio/Affy/CelFile.py'
2025-04-24 08:22:45,280 wheel INFO adding 'Bio/Affy/__init__.py'
2025-04-24 08:22:45,280 wheel INFO adding 'Bio/Align/AlignInfo.py'
2025-04-24 08:22:45,281 wheel INFO adding 'Bio/Align/__init__.py'
2025-04-24 08:22:45,281 wheel INFO adding 'Bio/Align/_aligncore.c'
2025-04-24 08:22:45,282 wheel INFO adding 'Bio/Align/_aligncore.cpython-312-x86_64-linux-musl.so'
2025-04-24 08:22:45,282 wheel INFO adding 'Bio/Align/_codonaligner.c'
2025-04-24 08:22:45,282 wheel INFO adding 'Bio/Align/_codonaligner.cpython-312-x86_64-linux-musl.so'
2025-04-24 08:22:45,283 wheel INFO adding 'Bio/Align/_pairwisealigner.c'
2025-04-24 08:22:45,284 wheel INFO adding 'Bio/Align/_pairwisealigner.cpython-312-x86_64-linux-musl.so'
2025-04-24 08:22:45,285 wheel INFO adding 'Bio/Align/a2m.py'
2025-04-24 08:22:45,285 wheel INFO adding 'Bio/Align/analysis.py'
2025-04-24 08:22:45,286 wheel INFO adding 'Bio/Align/bed.py'
2025-04-24 08:22:45,286 wheel INFO adding 'Bio/Align/bigbed.py'
2025-04-24 08:22:45,287 wheel INFO adding 'Bio/Align/bigmaf.py'
2025-04-24 08:22:45,287 wheel INFO adding 'Bio/Align/bigpsl.py'
2025-04-24 08:22:45,287 wheel INFO adding 'Bio/Align/chain.py'
2025-04-24 08:22:45,287 wheel INFO adding 'Bio/Align/clustal.py'
2025-04-24 08:22:45,288 wheel INFO adding 'Bio/Align/emboss.py'
2025-04-24 08:22:45,288 wheel INFO adding 'Bio/Align/exonerate.py'
2025-04-24 08:22:45,288 wheel INFO adding 'Bio/Align/fasta.py'
2025-04-24 08:22:45,288 wheel INFO adding 'Bio/Align/hhr.py'
2025-04-24 08:22:45,289 wheel INFO adding 'Bio/Align/interfaces.py'
2025-04-24 08:22:45,289 wheel INFO adding 'Bio/Align/maf.py'
2025-04-24 08:22:45,289 wheel INFO adding 'Bio/Align/mauve.py'
2025-04-24 08:22:45,290 wheel INFO adding 'Bio/Align/msf.py'
2025-04-24 08:22:45,290 wheel INFO adding 'Bio/Align/nexus.py'
2025-04-24 08:22:45,290 wheel INFO adding 'Bio/Align/phylip.py'
2025-04-24 08:22:45,290 wheel INFO adding 'Bio/Align/psl.py'
2025-04-24 08:22:45,291 wheel INFO adding 'Bio/Align/sam.py'
2025-04-24 08:22:45,291 wheel INFO adding 'Bio/Align/stockholm.py'
2025-04-24 08:22:45,291 wheel INFO adding 'Bio/Align/tabular.py'
2025-04-24 08:22:45,291 wheel INFO adding 'Bio/Align/Applications/_ClustalOmega.py'
2025-04-24 08:22:45,292 wheel INFO adding 'Bio/Align/Applications/_Clustalw.py'
2025-04-24 08:22:45,292 wheel INFO adding 'Bio/Align/Applications/_Dialign.py'
2025-04-24 08:22:45,292 wheel INFO adding 'Bio/Align/Applications/_MSAProbs.py'
2025-04-24 08:22:45,292 wheel INFO adding 'Bio/Align/Applications/_Mafft.py'
2025-04-24 08:22:45,293 wheel INFO adding 'Bio/Align/Applications/_Muscle.py'
2025-04-24 08:22:45,293 wheel INFO adding 'Bio/Align/Applications/_Prank.py'
2025-04-24 08:22:45,293 wheel INFO adding 'Bio/Align/Applications/_Probcons.py'
2025-04-24 08:22:45,294 wheel INFO adding 'Bio/Align/Applications/_TCoffee.py'
2025-04-24 08:22:45,294 wheel INFO adding 'Bio/Align/Applications/__init__.py'
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2025-04-24 08:22:45,421 wheel INFO adding 'Bio/Phylo/TreeConstruction.py'
2025-04-24 08:22:45,421 wheel INFO adding 'Bio/Phylo/__init__.py'
2025-04-24 08:22:45,421 wheel INFO adding 'Bio/Phylo/_cdao_owl.py'
2025-04-24 08:22:45,422 wheel INFO adding 'Bio/Phylo/_io.py'
2025-04-24 08:22:45,422 wheel INFO adding 'Bio/Phylo/_utils.py'
2025-04-24 08:22:45,422 wheel INFO adding 'Bio/Phylo/Applications/_Fasttree.py'
2025-04-24 08:22:45,423 wheel INFO adding 'Bio/Phylo/Applications/_Phyml.py'
2025-04-24 08:22:45,423 wheel INFO adding 'Bio/Phylo/Applications/_Raxml.py'
2025-04-24 08:22:45,423 wheel INFO adding 'Bio/Phylo/Applications/__init__.py'
2025-04-24 08:22:45,423 wheel INFO adding 'Bio/Phylo/PAML/__init__.py'
2025-04-24 08:22:45,423 wheel INFO adding 'Bio/Phylo/PAML/_paml.py'
2025-04-24 08:22:45,424 wheel INFO adding 'Bio/Phylo/PAML/_parse_baseml.py'
2025-04-24 08:22:45,424 wheel INFO adding 'Bio/Phylo/PAML/_parse_codeml.py'
2025-04-24 08:22:45,424 wheel INFO adding 'Bio/Phylo/PAML/_parse_yn00.py'
2025-04-24 08:22:45,424 wheel INFO adding 'Bio/Phylo/PAML/baseml.py'
2025-04-24 08:22:45,425 wheel INFO adding 'Bio/Phylo/PAML/chi2.py'
2025-04-24 08:22:45,425 wheel INFO adding 'Bio/Phylo/PAML/codeml.py'
2025-04-24 08:22:45,425 wheel INFO adding 'Bio/Phylo/PAML/yn00.py'
2025-04-24 08:22:45,425 wheel INFO adding 'Bio/PopGen/__init__.py'
2025-04-24 08:22:45,426 wheel INFO adding 'Bio/PopGen/GenePop/Controller.py'
2025-04-24 08:22:45,426 wheel INFO adding 'Bio/PopGen/GenePop/EasyController.py'
2025-04-24 08:22:45,426 wheel INFO adding 'Bio/PopGen/GenePop/FileParser.py'
2025-04-24 08:22:45,426 wheel INFO adding 'Bio/PopGen/GenePop/LargeFileParser.py'
2025-04-24 08:22:45,427 wheel INFO adding 'Bio/PopGen/GenePop/__init__.py'
2025-04-24 08:22:45,427 wheel INFO adding 'Bio/Restriction/PrintFormat.py'
2025-04-24 08:22:45,427 wheel INFO adding 'Bio/Restriction/Restriction.py'
2025-04-24 08:22:45,429 wheel INFO adding 'Bio/Restriction/Restriction_Dictionary.py'
2025-04-24 08:22:45,430 wheel INFO adding 'Bio/Restriction/__init__.py'
2025-04-24 08:22:45,431 wheel INFO adding 'Bio/SCOP/Cla.py'
2025-04-24 08:22:45,431 wheel INFO adding 'Bio/SCOP/Des.py'
2025-04-24 08:22:45,431 wheel INFO adding 'Bio/SCOP/Dom.py'
2025-04-24 08:22:45,431 wheel INFO adding 'Bio/SCOP/Hie.py'
2025-04-24 08:22:45,431 wheel INFO adding 'Bio/SCOP/Raf.py'
2025-04-24 08:22:45,432 wheel INFO adding 'Bio/SCOP/Residues.py'
2025-04-24 08:22:45,432 wheel INFO adding 'Bio/SCOP/__init__.py'
2025-04-24 08:22:45,432 wheel INFO adding 'Bio/SVDSuperimposer/__init__.py'
2025-04-24 08:22:45,432 wheel INFO adding 'Bio/SearchIO/BlatIO.py'
2025-04-24 08:22:45,433 wheel INFO adding 'Bio/SearchIO/FastaIO.py'
2025-04-24 08:22:45,433 wheel INFO adding 'Bio/SearchIO/__init__.py'
2025-04-24 08:22:45,433 wheel INFO adding 'Bio/SearchIO/_index.py'
2025-04-24 08:22:45,434 wheel INFO adding 'Bio/SearchIO/_utils.py'
2025-04-24 08:22:45,434 wheel INFO adding 'Bio/SearchIO/BlastIO/__init__.py'
2025-04-24 08:22:45,434 wheel INFO adding 'Bio/SearchIO/BlastIO/blast_tab.py'
2025-04-24 08:22:45,434 wheel INFO adding 'Bio/SearchIO/BlastIO/blast_xml.py'
2025-04-24 08:22:45,435 wheel INFO adding 'Bio/SearchIO/ExonerateIO/__init__.py'
2025-04-24 08:22:45,435 wheel INFO adding 'Bio/SearchIO/ExonerateIO/_base.py'
2025-04-24 08:22:45,435 wheel INFO adding 'Bio/SearchIO/ExonerateIO/exonerate_cigar.py'
2025-04-24 08:22:45,436 wheel INFO adding 'Bio/SearchIO/ExonerateIO/exonerate_text.py'
2025-04-24 08:22:45,436 wheel INFO adding 'Bio/SearchIO/ExonerateIO/exonerate_vulgar.py'
2025-04-24 08:22:45,436 wheel INFO adding 'Bio/SearchIO/HHsuiteIO/__init__.py'
2025-04-24 08:22:45,436 wheel INFO adding 'Bio/SearchIO/HHsuiteIO/hhsuite2_text.py'
2025-04-24 08:22:45,437 wheel INFO adding 'Bio/SearchIO/HmmerIO/__init__.py'
2025-04-24 08:22:45,437 wheel INFO adding 'Bio/SearchIO/HmmerIO/_base.py'
2025-04-24 08:22:45,437 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer2_text.py'
2025-04-24 08:22:45,437 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer3_domtab.py'
2025-04-24 08:22:45,438 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer3_tab.py'
2025-04-24 08:22:45,438 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer3_text.py'
2025-04-24 08:22:45,438 wheel INFO adding 'Bio/SearchIO/InterproscanIO/__init__.py'
2025-04-24 08:22:45,438 wheel INFO adding 'Bio/SearchIO/InterproscanIO/interproscan_xml.py'
2025-04-24 08:22:45,439 wheel INFO adding 'Bio/SearchIO/_model/__init__.py'
2025-04-24 08:22:45,439 wheel INFO adding 'Bio/SearchIO/_model/_base.py'
2025-04-24 08:22:45,439 wheel INFO adding 'Bio/SearchIO/_model/hit.py'
2025-04-24 08:22:45,439 wheel INFO adding 'Bio/SearchIO/_model/hsp.py'
2025-04-24 08:22:45,440 wheel INFO adding 'Bio/SearchIO/_model/query.py'
2025-04-24 08:22:45,440 wheel INFO adding 'Bio/SeqIO/AbiIO.py'
2025-04-24 08:22:45,440 wheel INFO adding 'Bio/SeqIO/AceIO.py'
2025-04-24 08:22:45,441 wheel INFO adding 'Bio/SeqIO/FastaIO.py'
2025-04-24 08:22:45,441 wheel INFO adding 'Bio/SeqIO/GckIO.py'
2025-04-24 08:22:45,441 wheel INFO adding 'Bio/SeqIO/GfaIO.py'
2025-04-24 08:22:45,441 wheel INFO adding 'Bio/SeqIO/IgIO.py'
2025-04-24 08:22:45,442 wheel INFO adding 'Bio/SeqIO/InsdcIO.py'
2025-04-24 08:22:45,442 wheel INFO adding 'Bio/SeqIO/Interfaces.py'
2025-04-24 08:22:45,442 wheel INFO adding 'Bio/SeqIO/NibIO.py'
2025-04-24 08:22:45,442 wheel INFO adding 'Bio/SeqIO/PdbIO.py'
2025-04-24 08:22:45,443 wheel INFO adding 'Bio/SeqIO/PhdIO.py'
2025-04-24 08:22:45,443 wheel INFO adding 'Bio/SeqIO/PirIO.py'
2025-04-24 08:22:45,443 wheel INFO adding 'Bio/SeqIO/QualityIO.py'
2025-04-24 08:22:45,444 wheel INFO adding 'Bio/SeqIO/SeqXmlIO.py'
2025-04-24 08:22:45,444 wheel INFO adding 'Bio/SeqIO/SffIO.py'
2025-04-24 08:22:45,445 wheel INFO adding 'Bio/SeqIO/SnapGeneIO.py'
2025-04-24 08:22:45,445 wheel INFO adding 'Bio/SeqIO/SwissIO.py'
2025-04-24 08:22:45,445 wheel INFO adding 'Bio/SeqIO/TabIO.py'
2025-04-24 08:22:45,445 wheel INFO adding 'Bio/SeqIO/TwoBitIO.py'
2025-04-24 08:22:45,445 wheel INFO adding 'Bio/SeqIO/UniprotIO.py'
2025-04-24 08:22:45,446 wheel INFO adding 'Bio/SeqIO/XdnaIO.py'
2025-04-24 08:22:45,446 wheel INFO adding 'Bio/SeqIO/__init__.py'
2025-04-24 08:22:45,446 wheel INFO adding 'Bio/SeqIO/_index.py'
2025-04-24 08:22:45,447 wheel INFO adding 'Bio/SeqIO/_twoBitIO.c'
2025-04-24 08:22:45,447 wheel INFO adding 'Bio/SeqIO/_twoBitIO.cpython-312-x86_64-linux-musl.so'
2025-04-24 08:22:45,447 wheel INFO adding 'Bio/SeqUtils/CheckSum.py'
2025-04-24 08:22:45,447 wheel INFO adding 'Bio/SeqUtils/IsoelectricPoint.py'
2025-04-24 08:22:45,448 wheel INFO adding 'Bio/SeqUtils/MeltingTemp.py'
2025-04-24 08:22:45,448 wheel INFO adding 'Bio/SeqUtils/ProtParam.py'
2025-04-24 08:22:45,448 wheel INFO adding 'Bio/SeqUtils/ProtParamData.py'
2025-04-24 08:22:45,449 wheel INFO adding 'Bio/SeqUtils/__init__.py'
2025-04-24 08:22:45,449 wheel INFO adding 'Bio/SeqUtils/lcc.py'
2025-04-24 08:22:45,449 wheel INFO adding 'Bio/Sequencing/Ace.py'
2025-04-24 08:22:45,450 wheel INFO adding 'Bio/Sequencing/Phd.py'
2025-04-24 08:22:45,450 wheel INFO adding 'Bio/Sequencing/__init__.py'
2025-04-24 08:22:45,450 wheel INFO adding 'Bio/Sequencing/Applications/_Novoalign.py'
2025-04-24 08:22:45,450 wheel INFO adding 'Bio/Sequencing/Applications/__init__.py'
2025-04-24 08:22:45,450 wheel INFO adding 'Bio/Sequencing/Applications/_bwa.py'
2025-04-24 08:22:45,451 wheel INFO adding 'Bio/Sequencing/Applications/_samtools.py'
2025-04-24 08:22:45,451 wheel INFO adding 'Bio/SwissProt/KeyWList.py'
2025-04-24 08:22:45,451 wheel INFO adding 'Bio/SwissProt/__init__.py'
2025-04-24 08:22:45,452 wheel INFO adding 'Bio/TogoWS/__init__.py'
2025-04-24 08:22:45,452 wheel INFO adding 'Bio/UniGene/__init__.py'
2025-04-24 08:22:45,452 wheel INFO adding 'Bio/UniProt/GOA.py'
2025-04-24 08:22:45,453 wheel INFO adding 'Bio/UniProt/__init__.py'
2025-04-24 08:22:45,453 wheel INFO adding 'Bio/codonalign/__init__.py'
2025-04-24 08:22:45,453 wheel INFO adding 'Bio/codonalign/codonalignment.py'
2025-04-24 08:22:45,453 wheel INFO adding 'Bio/codonalign/codonseq.py'
2025-04-24 08:22:45,454 wheel INFO adding 'Bio/motifs/__init__.py'
2025-04-24 08:22:45,454 wheel INFO adding 'Bio/motifs/_pwm.c'
2025-04-24 08:22:45,454 wheel INFO adding 'Bio/motifs/_pwm.cpython-312-x86_64-linux-musl.so'
2025-04-24 08:22:45,455 wheel INFO adding 'Bio/motifs/alignace.py'
2025-04-24 08:22:45,455 wheel INFO adding 'Bio/motifs/clusterbuster.py'
2025-04-24 08:22:45,455 wheel INFO adding 'Bio/motifs/mast.py'
2025-04-24 08:22:45,455 wheel INFO adding 'Bio/motifs/matrix.py'
2025-04-24 08:22:45,456 wheel INFO adding 'Bio/motifs/meme.py'
2025-04-24 08:22:45,456 wheel INFO adding 'Bio/motifs/minimal.py'
2025-04-24 08:22:45,456 wheel INFO adding 'Bio/motifs/pfm.py'
2025-04-24 08:22:45,456 wheel INFO adding 'Bio/motifs/thresholds.py'
2025-04-24 08:22:45,456 wheel INFO adding 'Bio/motifs/transfac.py'
2025-04-24 08:22:45,457 wheel INFO adding 'Bio/motifs/xms.py'
2025-04-24 08:22:45,457 wheel INFO adding 'Bio/motifs/applications/__init__.py'
2025-04-24 08:22:45,457 wheel INFO adding 'Bio/motifs/applications/_xxmotif.py'
2025-04-24 08:22:45,457 wheel INFO adding 'Bio/motifs/jaspar/__init__.py'
2025-04-24 08:22:45,458 wheel INFO adding 'Bio/motifs/jaspar/db.py'
2025-04-24 08:22:45,458 wheel INFO adding 'Bio/phenotype/__init__.py'
2025-04-24 08:22:45,458 wheel INFO adding 'Bio/phenotype/phen_micro.py'
2025-04-24 08:22:45,459 wheel INFO adding 'Bio/phenotype/pm_fitting.py'
2025-04-24 08:22:45,459 wheel INFO adding 'BioSQL/BioSeq.py'
2025-04-24 08:22:45,459 wheel INFO adding 'BioSQL/BioSeqDatabase.py'
2025-04-24 08:22:45,459 wheel INFO adding 'BioSQL/DBUtils.py'
2025-04-24 08:22:45,460 wheel INFO adding 'BioSQL/Loader.py'
2025-04-24 08:22:45,460 wheel INFO adding 'BioSQL/__init__.py'
2025-04-24 08:22:45,460 wheel INFO adding 'BioSQL/py.typed'
2025-04-24 08:22:45,461 wheel INFO adding 'biopython-1.85.dist-info/licenses/LICENSE'
2025-04-24 08:22:45,461 wheel INFO adding 'biopython-1.85.dist-info/licenses/LICENSE.rst'
2025-04-24 08:22:45,461 wheel INFO adding 'biopython-1.85.dist-info/METADATA'
2025-04-24 08:22:45,461 wheel INFO adding 'biopython-1.85.dist-info/WHEEL'
2025-04-24 08:22:45,461 wheel INFO adding 'biopython-1.85.dist-info/top_level.txt'
2025-04-24 08:22:45,464 wheel INFO adding 'biopython-1.85.dist-info/RECORD'
2025-04-24 08:22:45,466 root INFO removing build/bdist.linux-x86_64/wheel
2025-04-24 08:22:45,481 gpep517 INFO The backend produced .dist/biopython-1.85-cp312-cp312-linux_x86_64.whl
biopython-1.85-cp312-cp312-linux_x86_64.whl
>>> py3-biopython: Entering fakeroot...
>>> py3-biopython-pyc*: Running split function pyc...
'usr/lib/python3.12/site-packages/BioSQL/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/BioSQL/__pycache__'
'usr/lib/python3.12/site-packages/Bio/phenotype/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/phenotype/__pycache__'
'usr/lib/python3.12/site-packages/Bio/motifs/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/__pycache__'
'usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__'
'usr/lib/python3.12/site-packages/Bio/motifs/applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/applications/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Medline/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Medline/__pycache__'
'usr/lib/python3.12/site-packages/Bio/HMM/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/HMM/__pycache__'
'usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__'
'usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Application/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Application/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__'
'usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__'
'usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniGene/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Align/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/Applications/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Align/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Sequencing/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Sequencing/Applications/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Compass/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Compass/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Geo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Geo/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Blast/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Blast/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__'
'usr/lib/python3.12/site-packages/Bio/NMR/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/NMR/__pycache__'
'usr/lib/python3.12/site-packages/Bio/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/__pycache__'
'usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Affy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Affy/__pycache__'
'usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Phylo/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/Applications/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Data/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Data/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__'
'usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__'
>>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc...
>>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc
>>> py3-biopython*: Running postcheck for py3-biopython
>>> py3-biopython*: Preparing package py3-biopython...
>>> py3-biopython*: Stripping binaries
>>> py3-biopython-pyc*: Scanning shared objects
>>> py3-biopython*: Scanning shared objects
>>> py3-biopython-pyc*: Tracing dependencies...
	py3-numpy
	python3
	python3~3.12
>>> py3-biopython-pyc*: Package size: 6.4 MB
>>> py3-biopython-pyc*: Compressing data...
>>> py3-biopython-pyc*: Create checksum...
>>> py3-biopython-pyc*: Create py3-biopython-pyc-1.85-r0.apk
>>> py3-biopython*: Tracing dependencies...
	py3-numpy
	python3
	python3~3.12
	so:libc.musl-x86_64.so.1
>>> py3-biopython*: Package size: 11.2 MB
>>> py3-biopython*: Compressing data...
>>> py3-biopython*: Create checksum...
>>> py3-biopython*: Create py3-biopython-1.85-r0.apk
>>> py3-biopython: Build complete at Thu, 24 Apr 2025 08:22:49 +0000 elapsed time 0h 0m 21s
>>> py3-biopython: Cleaning up srcdir
>>> py3-biopython: Cleaning up pkgdir
>>> py3-biopython: Uninstalling dependencies...
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Executing busybox-1.37.0-r16.trigger
OK: 400 MiB in 106 packages
>>> py3-biopython: Updating the community/x86_64 repository index...
>>> py3-biopython: Signing the index...