>>> py3-bioframe: Building community/py3-bioframe 0.6.4-r1 (using abuild 3.13.0-r3) started Mon, 29 Apr 2024 07:45:30 +0000 >>> py3-bioframe: Checking sanity of /home/buildozer/aports/community/py3-bioframe/APKBUILD... >>> py3-bioframe: Analyzing dependencies... >>> py3-bioframe: Installing for build: build-base py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools py3-gpep517 py3-hatchling py3-wheel py3-pytest-xdist (1/117) Installing libbz2 (1.0.8-r6) (2/117) Installing libffi (3.4.6-r0) (3/117) Installing gdbm (1.23-r1) (4/117) Installing xz-libs (5.6.1-r3) (5/117) Installing mpdecimal (4.0.0-r0) (6/117) Installing libpanelw (6.4_p20240330-r0) (7/117) Installing readline (8.2.10-r0) (8/117) Installing sqlite-libs (3.45.3-r0) (9/117) Installing python3 (3.12.3-r1) (10/117) Installing python3-pycache-pyc0 (3.12.3-r1) (11/117) Installing pyc (3.12.3-r1) (12/117) Installing py3-cairo-pyc (1.26.0-r1) (13/117) Installing py3-certifi (2024.2.2-r1) (14/117) Installing py3-certifi-pyc (2024.2.2-r1) (15/117) Installing libgfortran (13.2.1_git20240309-r0) (16/117) Installing openblas (0.3.27-r0) (17/117) Installing py3-numpy (1.25.2-r1) (18/117) Installing py3-numpy-pyc (1.25.2-r1) (19/117) Installing py3-contourpy (1.2.1-r1) (20/117) Installing py3-contourpy-pyc (1.2.1-r1) (21/117) Installing py3-cycler (0.12.1-r1) (22/117) Installing py3-cycler-pyc (0.12.1-r1) (23/117) Installing py3-six (1.16.0-r9) (24/117) Installing py3-six-pyc (1.16.0-r9) (25/117) Installing py3-dateutil (2.9.0-r1) (26/117) Installing py3-dateutil-pyc (2.9.0-r1) (27/117) Installing py3-fonttools (4.51.0-r1) (28/117) Installing py3-fonttools-pyc (4.51.0-r1) (29/117) Installing py3-kiwisolver (1.4.5-r1) (30/117) Installing py3-kiwisolver-pyc (1.4.5-r1) (31/117) Installing py3-parsing (3.1.2-r1) (32/117) Installing py3-parsing-pyc (3.1.2-r1) (33/117) Installing py3-packaging (24.0-r1) (34/117) Installing py3-packaging-pyc (24.0-r1) (35/117) Installing libpng (1.6.43-r0) (36/117) Installing freetype (2.13.2-r0) (37/117) Installing libimagequant (4.2.2-r0) (38/117) Installing libjpeg-turbo (3.0.2-r0) (39/117) Installing lcms2 (2.16-r0) (40/117) Installing openjpeg (2.5.2-r0) (41/117) Installing libsharpyuv (1.3.2-r0) (42/117) Installing libwebp (1.3.2-r0) (43/117) Installing tiff (4.6.0t-r0) (44/117) Installing libwebpdemux (1.3.2-r0) (45/117) Installing libwebpmux (1.3.2-r0) (46/117) Installing libxau (1.0.11-r4) (47/117) Installing libmd (1.1.0-r0) (48/117) Installing libbsd (0.12.2-r0) (49/117) Installing libxdmcp (1.1.5-r1) (50/117) Installing libxcb (1.16.1-r0) (51/117) Installing py3-pillow (10.3.0-r2) (52/117) Installing py3-pillow-pyc (10.3.0-r2) (53/117) Installing py3-tz (2024.1-r1) (54/117) Installing py3-tz-pyc (2024.1-r1) (55/117) Installing tzdata (2024a-r1) (56/117) Installing tcl (8.6.14-r0) (57/117) Installing libx11 (1.8.9-r1) (58/117) Installing libxrender (0.9.11-r5) (59/117) Installing fontconfig (2.15.0-r1) (60/117) Installing libxft (2.3.8-r3) (61/117) Installing tk (8.6.14-r0) (62/117) Installing python3-tkinter (3.12.3-r0) (63/117) Installing python3-tkinter-pyc (3.12.3-r0) (64/117) Installing py3-matplotlib-pyc (3.7.3-r1) (65/117) Installing python3-pyc (3.12.3-r1) (66/117) Installing libxext (1.3.6-r2) (67/117) Installing pixman (0.43.2-r0) (68/117) Installing cairo (1.18.0-r0) (69/117) Installing py3-cairo (1.26.0-r1) (70/117) Installing qhull (2020.2-r3) (71/117) Installing py3-matplotlib (3.7.3-r1) (72/117) Installing py3-pandas (2.0.3-r1) (73/117) Installing py3-pandas-pyc (2.0.3-r1) (74/117) Installing yaml (0.2.5-r2) (75/117) Installing py3-yaml (6.0.1-r3) (76/117) Installing py3-yaml-pyc (6.0.1-r3) (77/117) Installing py3-charset-normalizer (3.3.2-r1) (78/117) Installing py3-charset-normalizer-pyc (3.3.2-r1) (79/117) Installing py3-idna (3.7-r0) (80/117) Installing py3-idna-pyc (3.7-r0) (81/117) Installing py3-urllib3 (1.26.18-r1) (82/117) Installing py3-urllib3-pyc (1.26.18-r1) (83/117) Installing py3-requests (2.31.0-r2) (84/117) Installing py3-requests-pyc (2.31.0-r2) (85/117) Installing py3-typing-extensions (4.11.0-r1) (86/117) Installing py3-typing-extensions-pyc (4.11.0-r1) (87/117) Installing py3-setuptools (69.5.1-r0) (88/117) Installing py3-setuptools-pyc (69.5.1-r0) (89/117) Installing py3-installer (0.7.0-r2) (90/117) Installing py3-installer-pyc (0.7.0-r2) (91/117) Installing py3-gpep517 (15-r2) (92/117) Installing py3-gpep517-pyc (15-r2) (93/117) Installing py3-editables (0.5-r2) (94/117) Installing py3-editables-pyc (0.5-r2) (95/117) Installing py3-pathspec (0.12.1-r2) (96/117) Installing py3-pathspec-pyc (0.12.1-r2) (97/117) Installing py3-pluggy (1.4.0-r1) (98/117) Installing py3-pluggy-pyc (1.4.0-r1) (99/117) Installing py3-trove-classifiers (2024.3.3-r2) (100/117) Installing py3-trove-classifiers-pyc (2024.3.3-r2) (101/117) Installing py3-hatchling (1.24.1-r0) (102/117) Installing py3-hatchling-pyc (1.24.1-r0) (103/117) Installing py3-wheel (0.42.0-r1) (104/117) Installing py3-wheel-pyc (0.42.0-r1) (105/117) Installing py3-apipkg (2.1.0-r3) (106/117) Installing py3-apipkg-pyc (2.1.0-r3) (107/117) Installing py3-execnet (1.9.0-r3) (108/117) Installing py3-execnet-pyc (1.9.0-r3) (109/117) Installing py3-iniconfig (2.0.0-r1) (110/117) Installing py3-iniconfig-pyc (2.0.0-r1) (111/117) Installing py3-py (1.11.0-r3) (112/117) Installing py3-py-pyc (1.11.0-r3) (113/117) Installing py3-pytest (8.1.1-r1) (114/117) Installing py3-pytest-pyc (8.1.1-r1) (115/117) Installing py3-pytest-xdist (3.5.0-r1) (116/117) Installing py3-pytest-xdist-pyc (3.5.0-r1) (117/117) Installing .makedepends-py3-bioframe (20240429.074532) Executing busybox-1.36.1-r26.trigger OK: 701 MiB in 224 packages >>> py3-bioframe: Cleaning up srcdir >>> py3-bioframe: Cleaning up pkgdir >>> py3-bioframe: Cleaning up tmpdir >>> py3-bioframe: Fetching https://distfiles.alpinelinux.org/distfiles/v3.20/bioframe-0.6.4.tar.gz Connecting to distfiles.alpinelinux.org (172.105.82.32:443) wget: server returned error: HTTP/1.1 404 Not Found >>> py3-bioframe: Fetching https://github.com/open2c/bioframe/archive/v0.6.4/bioframe-0.6.4.tar.gz Connecting to github.com (140.82.121.3:443) Connecting to codeload.github.com (140.82.121.10:443) saving to '/var/cache/distfiles/bioframe-0.6.4.tar.gz.part' bioframe-0.6.4.tar.g 100% |********************************| 937k 0:00:00 ETA '/var/cache/distfiles/bioframe-0.6.4.tar.gz.part' saved >>> py3-bioframe: Fetching https://distfiles.alpinelinux.org/distfiles/v3.20/bioframe-0.6.4.tar.gz >>> py3-bioframe: Checking sha512sums... bioframe-0.6.4.tar.gz: OK >>> py3-bioframe: Unpacking /var/cache/distfiles/bioframe-0.6.4.tar.gz... 2024-04-29 07:45:34,926 gpep517 INFO Building wheel via backend hatchling.build 2024-04-29 07:45:34,996 gpep517 INFO The backend produced .dist/bioframe-0.6.4-py2.py3-none-any.whl bioframe-0.6.4-py2.py3-none-any.whl ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-8.1.1, pluggy-1.4.0 rootdir: /home/buildozer/aports/community/py3-bioframe/src/bioframe-0.6.4 configfile: pyproject.toml plugins: xdist-3.5.0 created: 80/80 workers 80 workers [59 items] .s....s...s................................................ [100%] =============================== warnings summary =============================== tests/test_assembly_info.py: 6 warnings tests/test_resources.py: 10 warnings /usr/lib/python3.12/site-packages/pandas/core/computation/expr.py:557: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead return self.const_type(node.n, self.env) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 56 passed, 3 skipped, 16 warnings in 10.17s ================== >>> py3-bioframe: Entering fakeroot... >>> py3-bioframe-pyc*: Running split function pyc... '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe/usr/lib/python3.12/site-packages/bioframe/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/__pycache__' '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe/usr/lib/python3.12/site-packages/bioframe/io/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/io/__pycache__' '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe/usr/lib/python3.12/site-packages/bioframe/sandbox/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/sandbox/__pycache__' '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe/usr/lib/python3.12/site-packages/bioframe/core/__pycache__' -> '/home/buildozer/aports/community/py3-bioframe/pkg/py3-bioframe-pyc/usr/lib/python3.12/site-packages/bioframe/core/__pycache__' >>> py3-bioframe-pyc*: Preparing subpackage py3-bioframe-pyc... >>> py3-bioframe-pyc*: Running postcheck for py3-bioframe-pyc >>> py3-bioframe*: Running postcheck for py3-bioframe >>> py3-bioframe*: Preparing package py3-bioframe... >>> py3-bioframe-pyc*: Tracing dependencies... py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools python3~3.12 >>> py3-bioframe-pyc*: Package size: 320.0 KB >>> py3-bioframe-pyc*: Compressing data... >>> py3-bioframe-pyc*: Create checksum... >>> py3-bioframe-pyc*: Create py3-bioframe-pyc-0.6.4-r1.apk >>> py3-bioframe*: Tracing dependencies... py3-matplotlib py3-numpy py3-pandas py3-yaml py3-requests py3-typing-extensions py3-setuptools python3~3.12 >>> py3-bioframe*: Package size: 304.0 KB >>> py3-bioframe*: Compressing data... >>> py3-bioframe*: Create checksum... >>> py3-bioframe*: Create py3-bioframe-0.6.4-r1.apk >>> py3-bioframe: Build complete at Mon, 29 Apr 2024 07:45:46 +0000 elapsed time 0h 0m 16s >>> py3-bioframe: Cleaning up srcdir >>> py3-bioframe: Cleaning up pkgdir >>> py3-bioframe: Uninstalling dependencies... (1/117) Purging .makedepends-py3-bioframe (20240429.074532) (2/117) Purging py3-matplotlib-pyc (3.7.3-r1) (3/117) Purging py3-matplotlib (3.7.3-r1) (4/117) Purging py3-cairo-pyc (1.26.0-r1) (5/117) Purging py3-cairo (1.26.0-r1) (6/117) Purging py3-contourpy-pyc (1.2.1-r1) (7/117) Purging py3-contourpy (1.2.1-r1) (8/117) Purging py3-cycler-pyc (0.12.1-r1) (9/117) Purging py3-cycler (0.12.1-r1) (10/117) Purging py3-fonttools-pyc (4.51.0-r1) (11/117) Purging py3-fonttools (4.51.0-r1) (12/117) Purging py3-kiwisolver-pyc (1.4.5-r1) (13/117) Purging py3-kiwisolver (1.4.5-r1) (14/117) Purging py3-pillow-pyc (10.3.0-r2) (15/117) Purging py3-pillow (10.3.0-r2) (16/117) Purging python3-tkinter-pyc (3.12.3-r0) (17/117) Purging python3-tkinter (3.12.3-r0) (18/117) Purging py3-pandas-pyc (2.0.3-r1) (19/117) Purging py3-pandas (2.0.3-r1) (20/117) Purging py3-dateutil-pyc (2.9.0-r1) (21/117) Purging py3-dateutil (2.9.0-r1) (22/117) Purging py3-six-pyc (1.16.0-r9) (23/117) Purging py3-six (1.16.0-r9) (24/117) Purging py3-numpy-pyc (1.25.2-r1) (25/117) Purging py3-numpy (1.25.2-r1) (26/117) Purging openblas (0.3.27-r0) (27/117) Purging py3-tz-pyc (2024.1-r1) (28/117) Purging py3-tz (2024.1-r1) (29/117) Purging py3-yaml-pyc (6.0.1-r3) (30/117) Purging py3-yaml (6.0.1-r3) (31/117) Purging py3-requests-pyc (2.31.0-r2) (32/117) Purging py3-requests (2.31.0-r2) (33/117) Purging py3-certifi-pyc (2024.2.2-r1) (34/117) Purging py3-certifi (2024.2.2-r1) (35/117) Purging py3-charset-normalizer-pyc (3.3.2-r1) (36/117) Purging py3-charset-normalizer (3.3.2-r1) (37/117) Purging py3-idna-pyc (3.7-r0) (38/117) Purging py3-idna (3.7-r0) (39/117) Purging py3-urllib3-pyc (1.26.18-r1) (40/117) Purging py3-urllib3 (1.26.18-r1) (41/117) Purging py3-typing-extensions-pyc (4.11.0-r1) (42/117) Purging py3-typing-extensions (4.11.0-r1) (43/117) Purging py3-setuptools-pyc (69.5.1-r0) (44/117) Purging py3-setuptools (69.5.1-r0) (45/117) Purging py3-gpep517-pyc (15-r2) (46/117) Purging py3-gpep517 (15-r2) (47/117) Purging py3-installer-pyc (0.7.0-r2) (48/117) Purging py3-installer (0.7.0-r2) (49/117) Purging py3-hatchling-pyc (1.24.1-r0) (50/117) Purging py3-hatchling (1.24.1-r0) (51/117) Purging py3-editables-pyc (0.5-r2) (52/117) Purging py3-editables (0.5-r2) (53/117) Purging py3-pathspec-pyc (0.12.1-r2) (54/117) Purging py3-pathspec (0.12.1-r2) (55/117) Purging py3-trove-classifiers-pyc (2024.3.3-r2) (56/117) Purging py3-trove-classifiers (2024.3.3-r2) (57/117) Purging py3-wheel-pyc (0.42.0-r1) (58/117) Purging py3-wheel (0.42.0-r1) (59/117) Purging py3-pytest-xdist-pyc (3.5.0-r1) (60/117) Purging py3-pytest-xdist (3.5.0-r1) (61/117) Purging py3-execnet-pyc (1.9.0-r3) (62/117) Purging py3-execnet (1.9.0-r3) (63/117) Purging py3-apipkg-pyc (2.1.0-r3) (64/117) Purging py3-apipkg (2.1.0-r3) (65/117) Purging py3-pytest-pyc (8.1.1-r1) (66/117) Purging py3-pytest (8.1.1-r1) (67/117) Purging py3-iniconfig-pyc (2.0.0-r1) (68/117) Purging py3-iniconfig (2.0.0-r1) (69/117) Purging py3-packaging-pyc (24.0-r1) (70/117) Purging py3-packaging (24.0-r1) (71/117) Purging py3-parsing-pyc (3.1.2-r1) (72/117) Purging py3-parsing (3.1.2-r1) (73/117) Purging py3-pluggy-pyc (1.4.0-r1) (74/117) Purging py3-pluggy (1.4.0-r1) (75/117) Purging py3-py-pyc (1.11.0-r3) (76/117) Purging py3-py (1.11.0-r3) (77/117) Purging python3-pyc (3.12.3-r1) (78/117) Purging python3-pycache-pyc0 (3.12.3-r1) (79/117) Purging pyc (3.12.3-r1) (80/117) Purging python3 (3.12.3-r1) (81/117) Purging cairo (1.18.0-r0) (82/117) Purging gdbm (1.23-r1) (83/117) Purging lcms2 (2.16-r0) (84/117) Purging libffi (3.4.6-r0) (85/117) Purging libgfortran (13.2.1_git20240309-r0) (86/117) Purging libimagequant (4.2.2-r0) (87/117) Purging libpanelw (6.4_p20240330-r0) (88/117) Purging libwebpdemux (1.3.2-r0) (89/117) Purging libwebpmux (1.3.2-r0) (90/117) Purging libxext (1.3.6-r2) (91/117) Purging mpdecimal (4.0.0-r0) (92/117) Purging openjpeg (2.5.2-r0) (93/117) Purging pixman (0.43.2-r0) (94/117) Purging qhull (2020.2-r3) (95/117) Purging readline (8.2.10-r0) (96/117) Purging sqlite-libs (3.45.3-r0) (97/117) Purging tiff (4.6.0t-r0) (98/117) Purging tk (8.6.14-r0) (99/117) Purging xz-libs (5.6.1-r3) (100/117) Purging yaml (0.2.5-r2) (101/117) Purging libxft (2.3.8-r3) (102/117) Purging fontconfig (2.15.0-r1) (103/117) Purging freetype (2.13.2-r0) (104/117) Purging libxrender (0.9.11-r5) (105/117) Purging libx11 (1.8.9-r1) (106/117) Purging libxcb (1.16.1-r0) (107/117) Purging libxdmcp (1.1.5-r1) (108/117) Purging libbsd (0.12.2-r0) (109/117) Purging libbz2 (1.0.8-r6) (110/117) Purging libjpeg-turbo (3.0.2-r0) (111/117) Purging libmd (1.1.0-r0) (112/117) Purging libpng (1.6.43-r0) (113/117) Purging libwebp (1.3.2-r0) (114/117) Purging libsharpyuv (1.3.2-r0) (115/117) Purging libxau (1.0.11-r4) (116/117) Purging tcl (8.6.14-r0) (117/117) Purging tzdata (2024a-r1) Executing busybox-1.36.1-r26.trigger OK: 473 MiB in 107 packages >>> py3-bioframe: Updating the community/aarch64 repository index... >>> py3-bioframe: Signing the index...