>>> py3-kallisto: Building community/py3-kallisto 1.0.10-r2 (using abuild 3.14.1-r1) started Mon, 11 Nov 2024 18:01:43 +0000 >>> py3-kallisto: Validating /home/buildozer/aports/community/py3-kallisto/APKBUILD... >>> py3-kallisto: Analyzing dependencies... >>> py3-kallisto: Installing for build: build-base python3 py3-click py3-numpy py3-scipy py3-poetry-core py3-gpep517 py3-wheel py3-pytest py3-pytest-runner (1/62) Installing libbz2 (1.0.8-r6) (2/62) Installing libffi (3.4.6-r0) (3/62) Installing gdbm (1.24-r0) (4/62) Installing xz-libs (5.6.3-r0) (5/62) Installing mpdecimal (4.0.0-r0) (6/62) Installing libpanelw (6.5_p20241006-r3) (7/62) Installing sqlite-libs (3.47.0-r0) (8/62) Installing python3 (3.12.7-r1) (9/62) Installing python3-pycache-pyc0 (3.12.7-r1) (10/62) Installing pyc (3.12.7-r1) (11/62) Installing python3-pyc (3.12.7-r1) (12/62) Installing py3-click (8.1.7-r2) (13/62) Installing py3-click-pyc (8.1.7-r2) (14/62) Installing libgfortran (14.2.0-r4) (15/62) Installing openblas (0.3.28-r0) (16/62) Installing py3-numpy (2.1.2-r0) (17/62) Installing py3-numpy-pyc (2.1.2-r0) (18/62) Installing py3-parsing (3.1.4-r0) (19/62) Installing py3-parsing-pyc (3.1.4-r0) (20/62) Installing py3-packaging (24.2-r0) (21/62) Installing py3-packaging-pyc (24.2-r0) (22/62) Installing py3-platformdirs (4.3.6-r0) (23/62) Installing py3-platformdirs-pyc (4.3.6-r0) (24/62) Installing py3-certifi (2024.8.30-r0) (25/62) Installing py3-certifi-pyc (2024.8.30-r0) (26/62) Installing py3-charset-normalizer (3.4.0-r0) (27/62) Installing py3-charset-normalizer-pyc (3.4.0-r0) (28/62) Installing py3-idna (3.10-r0) (29/62) Installing py3-idna-pyc (3.10-r0) (30/62) Installing py3-urllib3 (1.26.20-r0) (31/62) Installing py3-urllib3-pyc (1.26.20-r0) (32/62) Installing py3-requests (2.32.3-r0) (33/62) Installing py3-requests-pyc (2.32.3-r0) (34/62) Installing py3-pooch (1.8.2-r0) (35/62) Installing py3-pooch-pyc (1.8.2-r0) (36/62) Installing py3-scipy (1.13.1-r1) (37/62) Installing py3-scipy-pyc (1.13.1-r1) (38/62) Installing py3-fastjsonschema (2.20.0-r0) (39/62) Installing py3-fastjsonschema-pyc (2.20.0-r0) (40/62) Installing py3-lark-parser (1.1.9-r1) (41/62) Installing py3-lark-parser-pyc (1.1.9-r1) (42/62) Installing py3-poetry-core (1.9.1-r0) (43/62) Installing py3-poetry-core-pyc (1.9.1-r0) (44/62) Installing py3-installer (0.7.0-r2) (45/62) Installing py3-installer-pyc (0.7.0-r2) (46/62) Installing py3-gpep517 (16-r0) (47/62) Installing py3-gpep517-pyc (16-r0) (48/62) Installing py3-wheel (0.43.0-r0) (49/62) Installing py3-wheel-pyc (0.43.0-r0) (50/62) Installing py3-iniconfig (2.0.0-r1) (51/62) Installing py3-iniconfig-pyc (2.0.0-r1) (52/62) Installing py3-pluggy (1.5.0-r0) (53/62) Installing py3-pluggy-pyc (1.5.0-r0) (54/62) Installing py3-py (1.11.0-r4) (55/62) Installing py3-py-pyc (1.11.0-r4) (56/62) Installing py3-pytest (8.3.3-r0) (57/62) Installing py3-pytest-pyc (8.3.3-r0) (58/62) Installing py3-setuptools (70.3.0-r0) (59/62) Installing py3-setuptools-pyc (70.3.0-r0) (60/62) Installing py3-pytest-runner (6.0.1-r1) (61/62) Installing py3-pytest-runner-pyc (6.0.1-r1) (62/62) Installing .makedepends-py3-kallisto (20241111.180157) Executing busybox-1.37.0-r6.trigger OK: 397 MiB in 163 packages >>> py3-kallisto: Cleaning up srcdir >>> py3-kallisto: Cleaning up pkgdir >>> py3-kallisto: Cleaning up tmpdir >>> py3-kallisto: Fetching https://distfiles.alpinelinux.org/distfiles/v3.21/kallisto-1.0.10.tar.gz Connecting to distfiles.alpinelinux.org (172.105.82.32:443) saving to '/var/cache/distfiles/v3.21/kallisto-1.0.10.tar.gz.part' kallisto-1.0.10.tar. 100% |********************************| 158k 0:00:00 ETA '/var/cache/distfiles/v3.21/kallisto-1.0.10.tar.gz.part' saved >>> py3-kallisto: Fetching https://distfiles.alpinelinux.org/distfiles/v3.21/kallisto-1.0.10.tar.gz >>> py3-kallisto: Checking sha512sums... kallisto-1.0.10.tar.gz: OK poetry.patch: OK >>> py3-kallisto: Unpacking /var/cache/distfiles/v3.21/kallisto-1.0.10.tar.gz... >>> py3-kallisto: poetry.patch patching file pyproject.toml 2024-11-11 18:01:58,869 gpep517 INFO Building wheel via backend poetry.core.masonry.api 2024-11-11 18:01:59,022 poetry.core.masonry.builders.wheel INFO Building wheel 2024-11-11 18:01:59,042 poetry.core.masonry.builders.wheel INFO Built kallisto-1.0.10-py3-none-any.whl 2024-11-11 18:01:59,043 gpep517 INFO The backend produced .dist/kallisto-1.0.10-py3-none-any.whl kallisto-1.0.10-py3-none-any.whl ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 rootdir: /home/buildozer/aports/community/py3-kallisto/src/kallisto-1.0.10 configfile: pyproject.toml collected 95 items tests/test_alp.py ... [ 3%] tests/test_atom.py ...... [ 9%] tests/test_bonds.py ... [ 12%] tests/test_cli.py ........................................... [ 57%] tests/test_cns.py ... [ 61%] tests/test_eeq.py ... [ 64%] tests/test_exs.py .. [ 66%] tests/test_grid.py . [ 67%] tests/test_lig.py . [ 68%] tests/test_molecule.py ............ [ 81%] tests/test_prox.py .. [ 83%] tests/test_rms.py . [ 84%] tests/test_stm.py . [ 85%] tests/test_strucreader.py ..... [ 90%] tests/test_vdw.py ........ [ 98%] tests/test_version.py . [100%] ============================== 95 passed in 1.42s ============================== /usr/lib/python3.12/site-packages/_pytest/pathlib.py:91: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-7d26d7d2-2c6b-4e0e-9cf9-696c636a8b6f/popen-gw57/test_discovery_via_path_in_non0 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-7d26d7d2-2c6b-4e0e-9cf9-696c636a8b6f/popen-gw57/test_discovery_via_path_in_non0' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:91: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-7d26d7d2-2c6b-4e0e-9cf9-696c636a8b6f/popen-gw57 : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-7d26d7d2-2c6b-4e0e-9cf9-696c636a8b6f/popen-gw57' warnings.warn( /usr/lib/python3.12/site-packages/_pytest/pathlib.py:91: PytestWarning: (rm_rf) error removing /tmp/pytest-of-buildozer/garbage-7d26d7d2-2c6b-4e0e-9cf9-696c636a8b6f : [Errno 39] Directory not empty: '/tmp/pytest-of-buildozer/garbage-7d26d7d2-2c6b-4e0e-9cf9-696c636a8b6f' warnings.warn( >>> py3-kallisto: Entering fakeroot... >>> py3-kallisto-pyc*: Running split function pyc... 'usr/lib/python3.12/site-packages/kallisto/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.12/site-packages/kallisto/__pycache__' 'usr/lib/python3.12/site-packages/kallisto/data/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.12/site-packages/kallisto/data/__pycache__' 'usr/lib/python3.12/site-packages/kallisto/utils/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.12/site-packages/kallisto/utils/__pycache__' 'usr/lib/python3.12/site-packages/kallisto/reader/__pycache__' -> '/home/buildozer/aports/community/py3-kallisto/pkg/py3-kallisto-pyc/usr/lib/python3.12/site-packages/kallisto/reader/__pycache__' >>> py3-kallisto-pyc*: Preparing subpackage py3-kallisto-pyc... >>> py3-kallisto-pyc*: Running postcheck for py3-kallisto-pyc >>> py3-kallisto*: Running postcheck for py3-kallisto >>> py3-kallisto*: Preparing package py3-kallisto... >>> py3-kallisto-pyc*: Tracing dependencies... python3 py3-click py3-numpy py3-scipy python3~3.12 >>> py3-kallisto-pyc*: Package size: 510.9 KB >>> py3-kallisto-pyc*: Compressing data... >>> py3-kallisto-pyc*: Create checksum... >>> py3-kallisto-pyc*: Create py3-kallisto-pyc-1.0.10-r2.apk >>> py3-kallisto*: Tracing dependencies... python3 py3-click py3-numpy py3-scipy python3~3.12 >>> py3-kallisto*: Package size: 390.1 KB >>> py3-kallisto*: Compressing data... >>> py3-kallisto*: Create checksum... >>> py3-kallisto*: Create py3-kallisto-1.0.10-r2.apk >>> py3-kallisto: Build complete at Mon, 11 Nov 2024 18:02:01 +0000 elapsed time 0h 0m 18s >>> py3-kallisto: Cleaning up srcdir >>> py3-kallisto: Cleaning up pkgdir >>> py3-kallisto: Uninstalling dependencies... (1/62) Purging .makedepends-py3-kallisto (20241111.180157) (2/62) Purging py3-click-pyc (8.1.7-r2) (3/62) Purging py3-click (8.1.7-r2) (4/62) Purging py3-scipy-pyc (1.13.1-r1) (5/62) Purging py3-scipy (1.13.1-r1) (6/62) Purging py3-pooch-pyc (1.8.2-r0) (7/62) Purging py3-pooch (1.8.2-r0) (8/62) Purging py3-platformdirs-pyc (4.3.6-r0) (9/62) Purging py3-platformdirs (4.3.6-r0) (10/62) Purging py3-requests-pyc (2.32.3-r0) (11/62) Purging py3-requests (2.32.3-r0) (12/62) Purging py3-certifi-pyc (2024.8.30-r0) (13/62) Purging py3-certifi (2024.8.30-r0) (14/62) Purging py3-charset-normalizer-pyc (3.4.0-r0) (15/62) Purging py3-charset-normalizer (3.4.0-r0) (16/62) Purging py3-idna-pyc (3.10-r0) (17/62) Purging py3-idna (3.10-r0) (18/62) Purging py3-urllib3-pyc (1.26.20-r0) (19/62) Purging py3-urllib3 (1.26.20-r0) (20/62) Purging py3-numpy-pyc (2.1.2-r0) (21/62) Purging py3-numpy (2.1.2-r0) (22/62) Purging openblas (0.3.28-r0) (23/62) Purging py3-poetry-core-pyc (1.9.1-r0) (24/62) Purging py3-poetry-core (1.9.1-r0) (25/62) Purging py3-fastjsonschema-pyc (2.20.0-r0) (26/62) Purging py3-fastjsonschema (2.20.0-r0) (27/62) Purging py3-lark-parser-pyc (1.1.9-r1) (28/62) Purging py3-lark-parser (1.1.9-r1) (29/62) Purging py3-gpep517-pyc (16-r0) (30/62) Purging py3-gpep517 (16-r0) (31/62) Purging py3-installer-pyc (0.7.0-r2) (32/62) Purging py3-installer (0.7.0-r2) (33/62) Purging py3-wheel-pyc (0.43.0-r0) (34/62) Purging py3-wheel (0.43.0-r0) (35/62) Purging py3-pytest-runner-pyc (6.0.1-r1) (36/62) Purging py3-pytest-runner (6.0.1-r1) (37/62) Purging py3-pytest-pyc (8.3.3-r0) (38/62) Purging py3-pytest (8.3.3-r0) (39/62) Purging py3-iniconfig-pyc (2.0.0-r1) (40/62) Purging py3-iniconfig (2.0.0-r1) (41/62) Purging py3-pluggy-pyc (1.5.0-r0) (42/62) Purging py3-pluggy (1.5.0-r0) (43/62) Purging py3-py-pyc (1.11.0-r4) (44/62) Purging py3-py (1.11.0-r4) (45/62) Purging py3-setuptools-pyc (70.3.0-r0) (46/62) Purging py3-setuptools (70.3.0-r0) (47/62) Purging py3-packaging-pyc (24.2-r0) (48/62) Purging py3-packaging (24.2-r0) (49/62) Purging py3-parsing-pyc (3.1.4-r0) (50/62) Purging py3-parsing (3.1.4-r0) (51/62) Purging python3-pyc (3.12.7-r1) (52/62) Purging python3-pycache-pyc0 (3.12.7-r1) (53/62) Purging pyc (3.12.7-r1) (54/62) Purging python3 (3.12.7-r1) (55/62) Purging gdbm (1.24-r0) (56/62) Purging libbz2 (1.0.8-r6) (57/62) Purging libffi (3.4.6-r0) (58/62) Purging libgfortran (14.2.0-r4) (59/62) Purging libpanelw (6.5_p20241006-r3) (60/62) Purging mpdecimal (4.0.0-r0) (61/62) Purging sqlite-libs (3.47.0-r0) (62/62) Purging xz-libs (5.6.3-r0) Executing busybox-1.37.0-r6.trigger OK: 271 MiB in 101 packages >>> py3-kallisto: Updating the community/armv7 repository index... >>> py3-kallisto: Signing the index...