>>> py3-biopython: Building community/py3-biopython 1.82-r1 (using abuild 3.14.1-r2) started Thu, 14 Nov 2024 12:51:36 +0000
>>> py3-biopython: Validating /home/buildozer/aports/community/py3-biopython/APKBUILD...
>>> py3-biopython: Analyzing dependencies...
>>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev
(1/29) Installing openblas (0.3.28-r0)
(2/29) Installing libbz2 (1.0.8-r6)
(3/29) Installing libffi (3.4.6-r0)
(4/29) Installing gdbm (1.24-r0)
(5/29) Installing xz-libs (5.6.3-r0)
(6/29) Installing mpdecimal (4.0.0-r0)
(7/29) Installing libpanelw (6.5_p20241006-r3)
(8/29) Installing sqlite-libs (3.47.0-r0)
(9/29) Installing python3 (3.12.7-r1)
(10/29) Installing python3-pycache-pyc0 (3.12.7-r1)
(11/29) Installing pyc (3.12.7-r1)
(12/29) Installing py3-numpy-pyc (2.1.2-r0)
(13/29) Installing python3-pyc (3.12.7-r1)
(14/29) Installing py3-numpy (2.1.2-r0)
(15/29) Installing py3-installer (0.7.0-r2)
(16/29) Installing py3-installer-pyc (0.7.0-r2)
(17/29) Installing py3-gpep517 (16-r0)
(18/29) Installing py3-gpep517-pyc (16-r0)
(19/29) Installing py3-parsing (3.1.4-r0)
(20/29) Installing py3-parsing-pyc (3.1.4-r0)
(21/29) Installing py3-packaging (24.2-r0)
(22/29) Installing py3-packaging-pyc (24.2-r0)
(23/29) Installing py3-setuptools (70.3.0-r0)
(24/29) Installing py3-setuptools-pyc (70.3.0-r0)
(25/29) Installing py3-wheel (0.43.0-r0)
(26/29) Installing py3-wheel-pyc (0.43.0-r0)
(27/29) Installing py3-numpy-dev (2.1.2-r0)
(28/29) Installing python3-dev (3.12.7-r1)
(29/29) Installing .makedepends-py3-biopython (20241114.125214)
Executing busybox-1.37.0-r7.trigger
OK: 617 MiB in 127 packages
>>> py3-biopython: Cleaning up srcdir
>>> py3-biopython: Cleaning up pkgdir
>>> py3-biopython: Cleaning up tmpdir
>>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/v3.20/biopython-1.82.tar.gz
Connecting to distfiles.alpinelinux.org (172.105.82.32:443)
saving to '/var/cache/distfiles/v3.21/biopython-1.82.tar.gz.part'
biopython-1.82.tar.g 100% |********************************| 18.5M  0:00:00 ETA
'/var/cache/distfiles/v3.21/biopython-1.82.tar.gz.part' saved
>>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/v3.20/biopython-1.82.tar.gz
>>> py3-biopython: Checking sha512sums...
biopython-1.82.tar.gz: OK
>>> py3-biopython: Unpacking /var/cache/distfiles/v3.21/biopython-1.82.tar.gz...
2024-11-14 12:52:22,709 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__
2024-11-14 12:52:22,772 root INFO running bdist_wheel
2024-11-14 12:52:22,852 root INFO running build
2024-11-14 12:52:22,852 root INFO running build_py
2024-11-14 12:52:22,865 root INFO creating build
2024-11-14 12:52:22,865 root INFO creating build/lib.linux-riscv64-cpython-312
2024-11-14 12:52:22,866 root INFO creating build/lib.linux-riscv64-cpython-312/Bio
2024-11-14 12:52:22,866 root INFO copying Bio/kNN.py -> build/lib.linux-riscv64-cpython-312/Bio
2024-11-14 12:52:22,868 root INFO copying Bio/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio
2024-11-14 12:52:22,869 root INFO copying Bio/MarkovModel.py -> build/lib.linux-riscv64-cpython-312/Bio
2024-11-14 12:52:22,870 root INFO copying Bio/SeqRecord.py -> build/lib.linux-riscv64-cpython-312/Bio
2024-11-14 12:52:22,872 root INFO copying Bio/pairwise2.py -> build/lib.linux-riscv64-cpython-312/Bio
2024-11-14 12:52:22,874 root INFO copying Bio/File.py -> build/lib.linux-riscv64-cpython-312/Bio
2024-11-14 12:52:22,876 root INFO copying Bio/NaiveBayes.py -> build/lib.linux-riscv64-cpython-312/Bio
2024-11-14 12:52:22,877 root INFO copying Bio/_utils.py -> build/lib.linux-riscv64-cpython-312/Bio
2024-11-14 12:52:22,878 root INFO copying Bio/Seq.py -> build/lib.linux-riscv64-cpython-312/Bio
2024-11-14 12:52:22,881 root INFO copying Bio/SeqFeature.py -> build/lib.linux-riscv64-cpython-312/Bio
2024-11-14 12:52:22,883 root INFO copying Bio/bgzf.py -> build/lib.linux-riscv64-cpython-312/Bio
2024-11-14 12:52:22,885 root INFO copying Bio/MaxEntropy.py -> build/lib.linux-riscv64-cpython-312/Bio
2024-11-14 12:52:22,886 root INFO copying Bio/LogisticRegression.py -> build/lib.linux-riscv64-cpython-312/Bio
2024-11-14 12:52:22,888 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Affy
2024-11-14 12:52:22,888 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Affy
2024-11-14 12:52:22,890 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-riscv64-cpython-312/Bio/Affy
2024-11-14 12:52:22,892 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,893 root INFO copying Bio/Align/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,896 root INFO copying Bio/Align/clustal.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,897 root INFO copying Bio/Align/hhr.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,898 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,899 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,901 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,902 root INFO copying Bio/Align/sam.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,903 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,904 root INFO copying Bio/Align/tabular.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,906 root INFO copying Bio/Align/a2m.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,907 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,908 root INFO copying Bio/Align/nexus.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,909 root INFO copying Bio/Align/analysis.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,911 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,912 root INFO copying Bio/Align/mauve.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,913 root INFO copying Bio/Align/psl.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,914 root INFO copying Bio/Align/maf.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,916 root INFO copying Bio/Align/bed.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,917 root INFO copying Bio/Align/phylip.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,918 root INFO copying Bio/Align/msf.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,919 root INFO copying Bio/Align/chain.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,920 root INFO copying Bio/Align/emboss.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,921 root INFO copying Bio/Align/fasta.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,922 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:22,924 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align/Applications
2024-11-14 12:52:22,925 root INFO copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications
2024-11-14 12:52:22,926 root INFO copying Bio/Align/Applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications
2024-11-14 12:52:22,927 root INFO copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications
2024-11-14 12:52:22,928 root INFO copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications
2024-11-14 12:52:22,929 root INFO copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications
2024-11-14 12:52:22,930 root INFO copying Bio/Align/Applications/_Prank.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications
2024-11-14 12:52:22,932 root INFO copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications
2024-11-14 12:52:22,933 root INFO copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications
2024-11-14 12:52:22,934 root INFO copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications
2024-11-14 12:52:22,935 root INFO copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications
2024-11-14 12:52:22,937 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices
2024-11-14 12:52:22,938 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices
2024-11-14 12:52:22,939 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/AlignIO
2024-11-14 12:52:22,940 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
2024-11-14 12:52:22,941 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
2024-11-14 12:52:22,942 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
2024-11-14 12:52:22,944 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
2024-11-14 12:52:22,945 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
2024-11-14 12:52:22,946 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
2024-11-14 12:52:22,947 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
2024-11-14 12:52:22,948 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
2024-11-14 12:52:22,949 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
2024-11-14 12:52:22,951 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
2024-11-14 12:52:22,952 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO
2024-11-14 12:52:22,953 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Alphabet
2024-11-14 12:52:22,954 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Alphabet
2024-11-14 12:52:22,955 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Application
2024-11-14 12:52:22,956 root INFO copying Bio/Application/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Application
2024-11-14 12:52:22,958 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Blast
2024-11-14 12:52:22,958 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast
2024-11-14 12:52:22,959 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast
2024-11-14 12:52:22,961 root INFO copying Bio/Blast/Applications.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast
2024-11-14 12:52:22,962 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast
2024-11-14 12:52:22,963 root INFO copying Bio/Blast/Record.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast
2024-11-14 12:52:22,965 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/CAPS
2024-11-14 12:52:22,965 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/CAPS
2024-11-14 12:52:22,967 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Cluster
2024-11-14 12:52:22,968 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Cluster
2024-11-14 12:52:22,969 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/codonalign
2024-11-14 12:52:22,970 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/codonalign
2024-11-14 12:52:22,971 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-riscv64-cpython-312/Bio/codonalign
2024-11-14 12:52:22,972 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-riscv64-cpython-312/Bio/codonalign
2024-11-14 12:52:22,974 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Compass
2024-11-14 12:52:22,975 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Compass
2024-11-14 12:52:22,976 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Data
2024-11-14 12:52:22,977 root INFO copying Bio/Data/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Data
2024-11-14 12:52:22,978 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-riscv64-cpython-312/Bio/Data
2024-11-14 12:52:22,979 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-riscv64-cpython-312/Bio/Data
2024-11-14 12:52:22,981 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-riscv64-cpython-312/Bio/Data
2024-11-14 12:52:22,982 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Emboss
2024-11-14 12:52:22,983 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss
2024-11-14 12:52:22,984 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss
2024-11-14 12:52:22,985 root INFO copying Bio/Emboss/Applications.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss
2024-11-14 12:52:22,987 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss
2024-11-14 12:52:22,988 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Entrez
2024-11-14 12:52:22,989 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Entrez
2024-11-14 12:52:22,990 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-riscv64-cpython-312/Bio/Entrez
2024-11-14 12:52:22,992 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/ExPASy
2024-11-14 12:52:22,993 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy
2024-11-14 12:52:22,994 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy
2024-11-14 12:52:22,995 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy
2024-11-14 12:52:22,996 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy
2024-11-14 12:52:22,997 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy
2024-11-14 12:52:22,998 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy
2024-11-14 12:52:23,000 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/GenBank
2024-11-14 12:52:23,000 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank
2024-11-14 12:52:23,002 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank
2024-11-14 12:52:23,003 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank
2024-11-14 12:52:23,004 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank
2024-11-14 12:52:23,006 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Geo
2024-11-14 12:52:23,007 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Geo
2024-11-14 12:52:23,008 root INFO copying Bio/Geo/Record.py -> build/lib.linux-riscv64-cpython-312/Bio/Geo
2024-11-14 12:52:23,009 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Graphics
2024-11-14 12:52:23,010 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics
2024-11-14 12:52:23,011 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics
2024-11-14 12:52:23,012 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics
2024-11-14 12:52:23,014 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics
2024-11-14 12:52:23,015 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics
2024-11-14 12:52:23,016 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics
2024-11-14 12:52:23,017 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics
2024-11-14 12:52:23,019 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2024-11-14 12:52:23,019 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2024-11-14 12:52:23,021 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2024-11-14 12:52:23,022 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2024-11-14 12:52:23,023 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2024-11-14 12:52:23,024 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2024-11-14 12:52:23,025 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2024-11-14 12:52:23,026 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2024-11-14 12:52:23,027 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2024-11-14 12:52:23,028 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2024-11-14 12:52:23,030 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2024-11-14 12:52:23,031 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2024-11-14 12:52:23,033 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram
2024-11-14 12:52:23,034 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/HMM
2024-11-14 12:52:23,035 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM
2024-11-14 12:52:23,036 root INFO copying Bio/HMM/MarkovModel.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM
2024-11-14 12:52:23,037 root INFO copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM
2024-11-14 12:52:23,039 root INFO copying Bio/HMM/Utilities.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM
2024-11-14 12:52:23,040 root INFO copying Bio/HMM/Trainer.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM
2024-11-14 12:52:23,041 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG
2024-11-14 12:52:23,042 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG
2024-11-14 12:52:23,043 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG
2024-11-14 12:52:23,045 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Compound
2024-11-14 12:52:23,045 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Compound
2024-11-14 12:52:23,047 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Enzyme
2024-11-14 12:52:23,048 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Enzyme
2024-11-14 12:52:23,049 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Gene
2024-11-14 12:52:23,050 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Gene
2024-11-14 12:52:23,051 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Map
2024-11-14 12:52:23,052 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Map
2024-11-14 12:52:23,053 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,054 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf
2024-11-14 12:52:23,054 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf
2024-11-14 12:52:23,055 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf
2024-11-14 12:52:23,057 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf
2024-11-14 12:52:23,058 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML
2024-11-14 12:52:23,059 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML
2024-11-14 12:52:23,060 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML
2024-11-14 12:52:23,061 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML
2024-11-14 12:52:23,063 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Medline
2024-11-14 12:52:23,063 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Medline
2024-11-14 12:52:23,065 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/motifs
2024-11-14 12:52:23,066 root INFO copying Bio/motifs/meme.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
2024-11-14 12:52:23,067 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
2024-11-14 12:52:23,068 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
2024-11-14 12:52:23,069 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
2024-11-14 12:52:23,071 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
2024-11-14 12:52:23,072 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
2024-11-14 12:52:23,073 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
2024-11-14 12:52:23,074 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
2024-11-14 12:52:23,075 root INFO copying Bio/motifs/mast.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
2024-11-14 12:52:23,076 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
2024-11-14 12:52:23,077 root INFO copying Bio/motifs/xms.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs
2024-11-14 12:52:23,079 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/motifs/applications
2024-11-14 12:52:23,079 root INFO copying Bio/motifs/applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/applications
2024-11-14 12:52:23,080 root INFO copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/applications
2024-11-14 12:52:23,082 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar
2024-11-14 12:52:23,082 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar
2024-11-14 12:52:23,084 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar
2024-11-14 12:52:23,086 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Nexus
2024-11-14 12:52:23,086 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus
2024-11-14 12:52:23,087 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus
2024-11-14 12:52:23,088 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus
2024-11-14 12:52:23,090 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus
2024-11-14 12:52:23,092 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus
2024-11-14 12:52:23,093 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/NMR
2024-11-14 12:52:23,094 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/NMR
2024-11-14 12:52:23,095 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-riscv64-cpython-312/Bio/NMR
2024-11-14 12:52:23,096 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-riscv64-cpython-312/Bio/NMR
2024-11-14 12:52:23,097 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Pathway
2024-11-14 12:52:23,098 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway
2024-11-14 12:52:23,100 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep
2024-11-14 12:52:23,100 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep
2024-11-14 12:52:23,101 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep
2024-11-14 12:52:23,102 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep
2024-11-14 12:52:23,105 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,106 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,107 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,108 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,109 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,111 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,112 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,114 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,115 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,116 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,118 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,119 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,120 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,121 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,122 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,123 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,124 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,125 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,127 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,128 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,130 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,131 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,132 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,133 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,134 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,135 root INFO copying Bio/PDB/Model.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,136 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,137 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,138 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,140 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,141 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,142 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,143 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,144 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,145 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,147 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,148 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,149 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:23,151 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/phenotype
2024-11-14 12:52:23,151 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/phenotype
2024-11-14 12:52:23,152 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-riscv64-cpython-312/Bio/phenotype
2024-11-14 12:52:23,153 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-riscv64-cpython-312/Bio/phenotype
2024-11-14 12:52:23,155 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PopGen
2024-11-14 12:52:23,156 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen
2024-11-14 12:52:23,157 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop
2024-11-14 12:52:23,158 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop
2024-11-14 12:52:23,159 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop
2024-11-14 12:52:23,160 root INFO copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop
2024-11-14 12:52:23,161 root INFO copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop
2024-11-14 12:52:23,162 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop
2024-11-14 12:52:23,164 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Restriction
2024-11-14 12:52:23,165 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction
2024-11-14 12:52:23,166 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction
2024-11-14 12:52:23,167 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction
2024-11-14 12:52:23,169 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction
2024-11-14 12:52:23,174 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SCOP
2024-11-14 12:52:23,174 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP
2024-11-14 12:52:23,176 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP
2024-11-14 12:52:23,177 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP
2024-11-14 12:52:23,178 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP
2024-11-14 12:52:23,179 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP
2024-11-14 12:52:23,181 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP
2024-11-14 12:52:23,182 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP
2024-11-14 12:52:23,184 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO
2024-11-14 12:52:23,184 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO
2024-11-14 12:52:23,186 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO
2024-11-14 12:52:23,187 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO
2024-11-14 12:52:23,188 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO
2024-11-14 12:52:23,190 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO
2024-11-14 12:52:23,192 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model
2024-11-14 12:52:23,193 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model
2024-11-14 12:52:23,194 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model
2024-11-14 12:52:23,195 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model
2024-11-14 12:52:23,196 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model
2024-11-14 12:52:23,198 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model
2024-11-14 12:52:23,199 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO
2024-11-14 12:52:23,200 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO
2024-11-14 12:52:23,201 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO
2024-11-14 12:52:23,203 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO
2024-11-14 12:52:23,204 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO
2024-11-14 12:52:23,205 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO
2024-11-14 12:52:23,206 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO
2024-11-14 12:52:23,208 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO
2024-11-14 12:52:23,208 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO
2024-11-14 12:52:23,210 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO
2024-11-14 12:52:23,211 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO
2024-11-14 12:52:23,212 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO
2024-11-14 12:52:23,213 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO
2024-11-14 12:52:23,214 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO
2024-11-14 12:52:23,216 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO
2024-11-14 12:52:23,217 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO
2024-11-14 12:52:23,218 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO
2024-11-14 12:52:23,219 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO
2024-11-14 12:52:23,220 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO
2024-11-14 12:52:23,221 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO
2024-11-14 12:52:23,223 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO
2024-11-14 12:52:23,224 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO
2024-11-14 12:52:23,225 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO
2024-11-14 12:52:23,227 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:52:23,228 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:52:23,229 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:52:23,230 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:52:23,232 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:52:23,233 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:52:23,234 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:52:23,235 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:52:23,236 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:52:23,238 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:52:23,239 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:52:23,240 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:52:23,241 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:52:23,242 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:52:23,244 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:52:23,245 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:52:23,246 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:52:23,247 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:52:23,249 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:52:23,250 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:52:23,251 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:52:23,253 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:52:23,254 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:52:23,256 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SeqUtils
2024-11-14 12:52:23,256 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils
2024-11-14 12:52:23,258 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils
2024-11-14 12:52:23,259 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils
2024-11-14 12:52:23,260 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils
2024-11-14 12:52:23,261 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils
2024-11-14 12:52:23,262 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils
2024-11-14 12:52:23,264 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils
2024-11-14 12:52:23,265 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Sequencing
2024-11-14 12:52:23,266 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing
2024-11-14 12:52:23,267 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing
2024-11-14 12:52:23,268 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing
2024-11-14 12:52:23,270 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications
2024-11-14 12:52:23,270 root INFO copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications
2024-11-14 12:52:23,271 root INFO copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications
2024-11-14 12:52:23,273 root INFO copying Bio/Sequencing/Applications/_samtools.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications
2024-11-14 12:52:23,274 root INFO copying Bio/Sequencing/Applications/_bwa.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications
2024-11-14 12:52:23,276 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SVDSuperimposer
2024-11-14 12:52:23,276 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SVDSuperimposer
2024-11-14 12:52:23,278 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SwissProt
2024-11-14 12:52:23,278 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SwissProt
2024-11-14 12:52:23,280 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-riscv64-cpython-312/Bio/SwissProt
2024-11-14 12:52:23,281 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/TogoWS
2024-11-14 12:52:23,282 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/TogoWS
2024-11-14 12:52:23,284 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Phylo
2024-11-14 12:52:23,285 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2024-11-14 12:52:23,286 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2024-11-14 12:52:23,287 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2024-11-14 12:52:23,288 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2024-11-14 12:52:23,290 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2024-11-14 12:52:23,291 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2024-11-14 12:52:23,293 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2024-11-14 12:52:23,294 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2024-11-14 12:52:23,295 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2024-11-14 12:52:23,296 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2024-11-14 12:52:23,297 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2024-11-14 12:52:23,299 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2024-11-14 12:52:23,300 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2024-11-14 12:52:23,301 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2024-11-14 12:52:23,302 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2024-11-14 12:52:23,303 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo
2024-11-14 12:52:23,305 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications
2024-11-14 12:52:23,305 root INFO copying Bio/Phylo/Applications/_Raxml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications
2024-11-14 12:52:23,307 root INFO copying Bio/Phylo/Applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications
2024-11-14 12:52:23,308 root INFO copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications
2024-11-14 12:52:23,309 root INFO copying Bio/Phylo/Applications/_Phyml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications
2024-11-14 12:52:23,311 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
2024-11-14 12:52:23,312 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
2024-11-14 12:52:23,313 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
2024-11-14 12:52:23,314 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
2024-11-14 12:52:23,315 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
2024-11-14 12:52:23,316 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
2024-11-14 12:52:23,317 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
2024-11-14 12:52:23,318 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
2024-11-14 12:52:23,319 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
2024-11-14 12:52:23,321 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML
2024-11-14 12:52:23,322 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/UniGene
2024-11-14 12:52:23,323 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/UniGene
2024-11-14 12:52:23,324 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/UniProt
2024-11-14 12:52:23,325 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/UniProt
2024-11-14 12:52:23,326 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-riscv64-cpython-312/Bio/UniProt
2024-11-14 12:52:23,328 root INFO creating build/lib.linux-riscv64-cpython-312/BioSQL
2024-11-14 12:52:23,329 root INFO copying BioSQL/__init__.py -> build/lib.linux-riscv64-cpython-312/BioSQL
2024-11-14 12:52:23,330 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-riscv64-cpython-312/BioSQL
2024-11-14 12:52:23,331 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-riscv64-cpython-312/BioSQL
2024-11-14 12:52:23,332 root INFO copying BioSQL/Loader.py -> build/lib.linux-riscv64-cpython-312/BioSQL
2024-11-14 12:52:23,333 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-riscv64-cpython-312/BioSQL
2024-11-14 12:52:23,335 root INFO running egg_info
2024-11-14 12:52:23,342 root INFO writing biopython.egg-info/PKG-INFO
2024-11-14 12:52:23,344 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt
2024-11-14 12:52:23,346 root INFO writing requirements to biopython.egg-info/requires.txt
2024-11-14 12:52:23,346 root INFO writing top-level names to biopython.egg-info/top_level.txt
2024-11-14 12:52:23,401 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt'
2024-11-14 12:52:23,463 root INFO reading manifest template 'MANIFEST.in'
2024-11-14 12:52:23,825 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip'
2024-11-14 12:52:23,836 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution
2024-11-14 12:52:23,845 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution
2024-11-14 12:52:23,854 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution
2024-11-14 12:52:23,863 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution
2024-11-14 12:52:23,885 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt'
2024-11-14 12:52:23,886 root INFO adding license file 'LICENSE'
2024-11-14 12:52:23,886 root INFO adding license file 'LICENSE.rst'
2024-11-14 12:52:24,014 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt'
/usr/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are
        already explicitly excluding 'Bio.Align.substitution_matrices.data' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
/usr/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'Bio.Entrez.DTDs' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'Bio.Entrez.DTDs' to be distributed and are
        already explicitly excluding 'Bio.Entrez.DTDs' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
/usr/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'Bio.Entrez.XSDs' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'Bio.Entrez.XSDs' to be distributed and are
        already explicitly excluding 'Bio.Entrez.XSDs' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
2024-11-14 12:52:24,131 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-riscv64-cpython-312/Bio
2024-11-14 12:52:24,133 root INFO copying Bio/py.typed -> build/lib.linux-riscv64-cpython-312/Bio
2024-11-14 12:52:24,134 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:24,135 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:24,137 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,138 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,139 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,140 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,141 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,142 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,144 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,145 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,146 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,147 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,148 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,149 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,150 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,151 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,152 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,154 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,155 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,156 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,157 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,158 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,159 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,160 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,161 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,162 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,163 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,165 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,166 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,167 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,168 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,169 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,170 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data
2024-11-14 12:52:24,171 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-riscv64-cpython-312/Bio/Cluster
2024-11-14 12:52:24,174 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-riscv64-cpython-312/Bio/Cluster
2024-11-14 12:52:24,175 root INFO copying Bio/Cluster/clustermodule.c -> build/lib.linux-riscv64-cpython-312/Bio/Cluster
2024-11-14 12:52:24,176 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
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2024-11-14 12:52:24,519 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2024-11-14 12:52:24,520 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2024-11-14 12:52:24,522 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2024-11-14 12:52:24,523 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2024-11-14 12:52:24,524 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2024-11-14 12:52:24,525 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2024-11-14 12:52:24,527 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2024-11-14 12:52:24,528 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2024-11-14 12:52:24,529 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2024-11-14 12:52:24,530 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs
2024-11-14 12:52:24,532 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs
2024-11-14 12:52:24,532 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs
2024-11-14 12:52:24,533 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-riscv64-cpython-312/Bio/motifs
2024-11-14 12:52:24,534 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-riscv64-cpython-312/Bio/Nexus
2024-11-14 12:52:24,536 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:24,537 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:52:24,538 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:52:24,540 root INFO copying BioSQL/py.typed -> build/lib.linux-riscv64-cpython-312/BioSQL
2024-11-14 12:52:24,568 root INFO running build_ext
2024-11-14 12:52:24,574 root INFO building 'Bio.Align._codonaligner' extension
2024-11-14 12:52:24,575 root INFO creating build/temp.linux-riscv64-cpython-312
2024-11-14 12:52:24,575 root INFO creating build/temp.linux-riscv64-cpython-312/Bio
2024-11-14 12:52:24,576 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/Align
2024-11-14 12:52:24,576 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_codonaligner.c -o build/temp.linux-riscv64-cpython-312/Bio/Align/_codonaligner.o
2024-11-14 12:52:27,381 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Align/_codonaligner.cpython-312-riscv64-linux-musl.so
2024-11-14 12:52:27,429 root INFO building 'Bio.Align._pairwisealigner' extension
2024-11-14 12:52:27,430 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.o
Bio/Align/_pairwisealigner.c: In function 'Aligner_watermansmithbeyer_global_align_compare':
Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized]
 5735 |         if (Ix_row) { \
      |            ^
Bio/Align/_pairwisealigner.c:6319:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN'
 6319 |     WATERMANSMITHBEYER_EXIT_ALIGN;
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here
 5405 |     double** Ix_row; \
      |              ^~~~~~
Bio/Align/_pairwisealigner.c:6308:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN'
 6308 |     WATERMANSMITHBEYER_ENTER_ALIGN(Global);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Bio/Align/_pairwisealigner.c:5737:16: warning: 'Iy_row' may be used uninitialized [-Wmaybe-uninitialized]
 5737 |             if (Iy_row) { \
      |                ^
Bio/Align/_pairwisealigner.c:6319:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN'
 6319 |     WATERMANSMITHBEYER_EXIT_ALIGN;
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Bio/Align/_pairwisealigner.c:5406:14: note: 'Iy_row' was declared here
 5406 |     double** Iy_row; \
      |              ^~~~~~
Bio/Align/_pairwisealigner.c:6308:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN'
 6308 |     WATERMANSMITHBEYER_ENTER_ALIGN(Global);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Bio/Align/_pairwisealigner.c: In function 'Aligner_watermansmithbeyer_local_align_compare':
Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized]
 5735 |         if (Ix_row) { \
      |            ^
Bio/Align/_pairwisealigner.c:6367:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN'
 6367 |     WATERMANSMITHBEYER_EXIT_ALIGN;
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here
 5405 |     double** Ix_row; \
      |              ^~~~~~
Bio/Align/_pairwisealigner.c:6356:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN'
 6356 |     WATERMANSMITHBEYER_ENTER_ALIGN(Local);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Bio/Align/_pairwisealigner.c:5737:16: warning: 'Iy_row' may be used uninitialized [-Wmaybe-uninitialized]
 5737 |             if (Iy_row) { \
      |                ^
Bio/Align/_pairwisealigner.c:6367:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN'
 6367 |     WATERMANSMITHBEYER_EXIT_ALIGN;
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Bio/Align/_pairwisealigner.c:5406:14: note: 'Iy_row' was declared here
 5406 |     double** Iy_row; \
      |              ^~~~~~
Bio/Align/_pairwisealigner.c:6356:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN'
 6356 |     WATERMANSMITHBEYER_ENTER_ALIGN(Local);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'Aligner_watermansmithbeyer_global_align_matrix',
    inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6874:34:
Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized]
 5735 |         if (Ix_row) { \
      |            ^
Bio/Align/_pairwisealigner.c:6341:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN'
 6341 |     WATERMANSMITHBEYER_EXIT_ALIGN;
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Bio/Align/_pairwisealigner.c: In function 'Aligner_align':
Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here
 5405 |     double** Ix_row; \
      |              ^~~~~~
Bio/Align/_pairwisealigner.c:6330:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN'
 6330 |     WATERMANSMITHBEYER_ENTER_ALIGN(Global);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'Aligner_watermansmithbeyer_global_align_matrix',
    inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6874:34:
Bio/Align/_pairwisealigner.c:5737:16: warning: 'Iy_row' may be used uninitialized [-Wmaybe-uninitialized]
 5737 |             if (Iy_row) { \
      |                ^
Bio/Align/_pairwisealigner.c:6341:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN'
 6341 |     WATERMANSMITHBEYER_EXIT_ALIGN;
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Bio/Align/_pairwisealigner.c: In function 'Aligner_align':
Bio/Align/_pairwisealigner.c:5406:14: note: 'Iy_row' was declared here
 5406 |     double** Iy_row; \
      |              ^~~~~~
Bio/Align/_pairwisealigner.c:6330:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN'
 6330 |     WATERMANSMITHBEYER_ENTER_ALIGN(Global);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'Aligner_watermansmithbeyer_local_align_matrix',
    inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6880:34:
Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized]
 5735 |         if (Ix_row) { \
      |            ^
Bio/Align/_pairwisealigner.c:6392:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN'
 6392 |     WATERMANSMITHBEYER_EXIT_ALIGN;
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Bio/Align/_pairwisealigner.c: In function 'Aligner_align':
Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here
 5405 |     double** Ix_row; \
      |              ^~~~~~
Bio/Align/_pairwisealigner.c:6381:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN'
 6381 |     WATERMANSMITHBEYER_ENTER_ALIGN(Local);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function 'Aligner_watermansmithbeyer_local_align_matrix',
    inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6880:34:
Bio/Align/_pairwisealigner.c:5737:16: warning: 'Iy_row' may be used uninitialized [-Wmaybe-uninitialized]
 5737 |             if (Iy_row) { \
      |                ^
Bio/Align/_pairwisealigner.c:6392:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN'
 6392 |     WATERMANSMITHBEYER_EXIT_ALIGN;
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Bio/Align/_pairwisealigner.c: In function 'Aligner_align':
Bio/Align/_pairwisealigner.c:5406:14: note: 'Iy_row' was declared here
 5406 |     double** Iy_row; \
      |              ^~~~~~
Bio/Align/_pairwisealigner.c:6381:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN'
 6381 |     WATERMANSMITHBEYER_ENTER_ALIGN(Local);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-11-14 12:52:59,532 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-riscv64-linux-musl.so
2024-11-14 12:52:59,746 root INFO building 'Bio.cpairwise2' extension
2024-11-14 12:52:59,746 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.linux-riscv64-cpython-312/Bio/cpairwise2module.o
Bio/cpairwise2module.c: In function '_get_match_score':
Bio/cpairwise2module.c:60:5: warning: 'PyEval_CallObjectWithKeywords' is deprecated [-Wdeprecated-declarations]
   60 |     if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist)))
      |     ^~
In file included from /usr/include/python3.12/Python.h:95,
                 from Bio/cpairwise2module.c:16:
/usr/include/python3.12/ceval.h:27:43: note: declared here
   27 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords(
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-11-14 12:53:01,350 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/cpairwise2.cpython-312-riscv64-linux-musl.so
2024-11-14 12:53:01,394 root INFO building 'Bio.Nexus.cnexus' extension
2024-11-14 12:53:01,395 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/Nexus
2024-11-14 12:53:01,395 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.linux-riscv64-cpython-312/Bio/Nexus/cnexus.o
2024-11-14 12:53:02,067 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Nexus/cnexus.cpython-312-riscv64-linux-musl.so
2024-11-14 12:53:02,107 root INFO building 'Bio.motifs._pwm' extension
2024-11-14 12:53:02,107 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/motifs
2024-11-14 12:53:02,108 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.linux-riscv64-cpython-312/Bio/motifs/_pwm.o
2024-11-14 12:53:02,960 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/motifs/_pwm.cpython-312-riscv64-linux-musl.so
2024-11-14 12:53:03,001 root INFO building 'Bio.Cluster._cluster' extension
2024-11-14 12:53:03,001 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/Cluster
2024-11-14 12:53:03,002 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.linux-riscv64-cpython-312/Bio/Cluster/cluster.o
2024-11-14 12:53:15,080 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.linux-riscv64-cpython-312/Bio/Cluster/clustermodule.o
2024-11-14 12:53:18,596 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Cluster/cluster.o build/temp.linux-riscv64-cpython-312/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Cluster/_cluster.cpython-312-riscv64-linux-musl.so
2024-11-14 12:53:18,685 root INFO building 'Bio.PDB.kdtrees' extension
2024-11-14 12:53:18,686 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/PDB
2024-11-14 12:53:18,686 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.linux-riscv64-cpython-312/Bio/PDB/kdtrees.o
2024-11-14 12:53:20,954 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/PDB/kdtrees.cpython-312-riscv64-linux-musl.so
2024-11-14 12:53:21,004 root INFO building 'Bio.PDB.ccealign' extension
2024-11-14 12:53:21,004 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-riscv64-cpython-312/Bio/PDB/ccealignmodule.o
2024-11-14 12:53:22,997 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/PDB/ccealign.cpython-312-riscv64-linux-musl.so
2024-11-14 12:53:23,042 root INFO building 'Bio.SeqIO._twoBitIO' extension
2024-11-14 12:53:23,042 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/SeqIO
2024-11-14 12:53:23,043 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.o
2024-11-14 12:53:24,060 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-riscv64-linux-musl.so
2024-11-14 12:53:24,121 root INFO installing to build/bdist.linux-riscv64/wheel
2024-11-14 12:53:24,122 root INFO running install
2024-11-14 12:53:24,167 root INFO running install_lib
2024-11-14 12:53:24,178 root INFO creating build/bdist.linux-riscv64
2024-11-14 12:53:24,178 root INFO creating build/bdist.linux-riscv64/wheel
2024-11-14 12:53:24,179 root INFO creating build/bdist.linux-riscv64/wheel/BioSQL
2024-11-14 12:53:24,180 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/__init__.py -> build/bdist.linux-riscv64/wheel/BioSQL
2024-11-14 12:53:24,181 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/DBUtils.py -> build/bdist.linux-riscv64/wheel/BioSQL
2024-11-14 12:53:24,182 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/BioSeq.py -> build/bdist.linux-riscv64/wheel/BioSQL
2024-11-14 12:53:24,183 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/py.typed -> build/bdist.linux-riscv64/wheel/BioSQL
2024-11-14 12:53:24,184 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/Loader.py -> build/bdist.linux-riscv64/wheel/BioSQL
2024-11-14 12:53:24,186 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/BioSeqDatabase.py -> build/bdist.linux-riscv64/wheel/BioSQL
2024-11-14 12:53:24,187 root INFO creating build/bdist.linux-riscv64/wheel/Bio
2024-11-14 12:53:24,188 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/kNN.py -> build/bdist.linux-riscv64/wheel/Bio
2024-11-14 12:53:24,189 root INFO creating build/bdist.linux-riscv64/wheel/Bio/CAPS
2024-11-14 12:53:24,190 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/CAPS/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/CAPS
2024-11-14 12:53:24,191 root INFO creating build/bdist.linux-riscv64/wheel/Bio/GenBank
2024-11-14 12:53:24,192 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/GenBank
2024-11-14 12:53:24,193 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/Scanner.py -> build/bdist.linux-riscv64/wheel/Bio/GenBank
2024-11-14 12:53:24,195 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/utils.py -> build/bdist.linux-riscv64/wheel/Bio/GenBank
2024-11-14 12:53:24,196 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/Record.py -> build/bdist.linux-riscv64/wheel/Bio/GenBank
2024-11-14 12:53:24,197 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Nexus
2024-11-14 12:53:24,198 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus
2024-11-14 12:53:24,199 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/Nodes.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus
2024-11-14 12:53:24,200 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/cnexus.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/Nexus
2024-11-14 12:53:24,201 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/Nexus.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus
2024-11-14 12:53:24,203 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/Trees.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus
2024-11-14 12:53:24,204 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/cnexus.c -> build/bdist.linux-riscv64/wheel/Bio/Nexus
2024-11-14 12:53:24,206 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/StandardData.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus
2024-11-14 12:53:24,207 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/__init__.py -> build/bdist.linux-riscv64/wheel/Bio
2024-11-14 12:53:24,208 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Alphabet
2024-11-14 12:53:24,209 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Alphabet/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Alphabet
2024-11-14 12:53:24,210 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/MarkovModel.py -> build/bdist.linux-riscv64/wheel/Bio
2024-11-14 12:53:24,211 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Data
2024-11-14 12:53:24,212 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Data
2024-11-14 12:53:24,213 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/PDBData.py -> build/bdist.linux-riscv64/wheel/Bio/Data
2024-11-14 12:53:24,214 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/IUPACData.py -> build/bdist.linux-riscv64/wheel/Bio/Data
2024-11-14 12:53:24,215 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/CodonTable.py -> build/bdist.linux-riscv64/wheel/Bio/Data
2024-11-14 12:53:24,217 root INFO creating build/bdist.linux-riscv64/wheel/Bio/UniGene
2024-11-14 12:53:24,217 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/UniGene/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/UniGene
2024-11-14 12:53:24,219 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqRecord.py -> build/bdist.linux-riscv64/wheel/Bio
2024-11-14 12:53:24,220 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/pairwise2.py -> build/bdist.linux-riscv64/wheel/Bio
2024-11-14 12:53:24,222 root INFO creating build/bdist.linux-riscv64/wheel/Bio/ExPASy
2024-11-14 12:53:24,223 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy
2024-11-14 12:53:24,224 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/Prodoc.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy
2024-11-14 12:53:24,225 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/Prosite.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy
2024-11-14 12:53:24,226 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy
2024-11-14 12:53:24,227 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy
2024-11-14 12:53:24,228 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/Enzyme.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy
2024-11-14 12:53:24,230 root INFO creating build/bdist.linux-riscv64/wheel/Bio/phenotype
2024-11-14 12:53:24,230 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/phenotype/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/phenotype
2024-11-14 12:53:24,232 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/phenotype/pm_fitting.py -> build/bdist.linux-riscv64/wheel/Bio/phenotype
2024-11-14 12:53:24,233 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/phenotype/phen_micro.py -> build/bdist.linux-riscv64/wheel/Bio/phenotype
2024-11-14 12:53:24,234 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo
2024-11-14 12:53:24,235 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo
2024-11-14 12:53:24,236 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/BaseTree.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo
2024-11-14 12:53:24,238 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/CDAOIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo
2024-11-14 12:53:24,239 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo
2024-11-14 12:53:24,240 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo
2024-11-14 12:53:24,242 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications
2024-11-14 12:53:24,243 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications/_Raxml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications
2024-11-14 12:53:24,244 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications
2024-11-14 12:53:24,245 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications/_Fasttree.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications
2024-11-14 12:53:24,246 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications/_Phyml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications
2024-11-14 12:53:24,248 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Consensus.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo
2024-11-14 12:53:24,249 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Newick.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo
2024-11-14 12:53:24,250 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/_utils.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo
2024-11-14 12:53:24,251 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo
2024-11-14 12:53:24,253 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/_io.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo
2024-11-14 12:53:24,254 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PhyloXML.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo
2024-11-14 12:53:24,255 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo
2024-11-14 12:53:24,256 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/CDAO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo
2024-11-14 12:53:24,258 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NeXML.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo
2024-11-14 12:53:24,259 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NexusIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo
2024-11-14 12:53:24,260 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NewickIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo
2024-11-14 12:53:24,261 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML
2024-11-14 12:53:24,262 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML
2024-11-14 12:53:24,263 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML
2024-11-14 12:53:24,264 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML
2024-11-14 12:53:24,265 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML
2024-11-14 12:53:24,266 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML
2024-11-14 12:53:24,267 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML
2024-11-14 12:53:24,269 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML
2024-11-14 12:53:24,270 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML
2024-11-14 12:53:24,271 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML
2024-11-14 12:53:24,272 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/File.py -> build/bdist.linux-riscv64/wheel/Bio
2024-11-14 12:53:24,274 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NaiveBayes.py -> build/bdist.linux-riscv64/wheel/Bio
2024-11-14 12:53:24,275 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Graphics
2024-11-14 12:53:24,276 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/KGML_vis.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics
2024-11-14 12:53:24,277 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram
2024-11-14 12:53:24,278 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram
2024-11-14 12:53:24,279 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram
2024-11-14 12:53:24,280 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram
2024-11-14 12:53:24,281 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram
2024-11-14 12:53:24,282 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram
2024-11-14 12:53:24,283 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram
2024-11-14 12:53:24,284 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram
2024-11-14 12:53:24,286 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram
2024-11-14 12:53:24,287 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram
2024-11-14 12:53:24,288 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram
2024-11-14 12:53:24,290 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram
2024-11-14 12:53:24,291 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram
2024-11-14 12:53:24,292 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics
2024-11-14 12:53:24,294 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics
2024-11-14 12:53:24,295 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/Comparative.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics
2024-11-14 12:53:24,296 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics
2024-11-14 12:53:24,297 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/Distribution.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics
2024-11-14 12:53:24,299 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics
2024-11-14 12:53:24,300 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/cpairwise2module.c -> build/bdist.linux-riscv64/wheel/Bio
2024-11-14 12:53:24,301 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SCOP
2024-11-14 12:53:24,302 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP
2024-11-14 12:53:24,303 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Des.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP
2024-11-14 12:53:24,304 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Hie.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP
2024-11-14 12:53:24,305 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Cla.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP
2024-11-14 12:53:24,306 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Dom.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP
2024-11-14 12:53:24,307 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Residues.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP
2024-11-14 12:53:24,308 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Raf.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP
2024-11-14 12:53:24,310 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Application
2024-11-14 12:53:24,310 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Application/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Application
2024-11-14 12:53:24,312 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO
2024-11-14 12:53:24,312 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO
2024-11-14 12:53:24,314 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_index.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO
2024-11-14 12:53:24,315 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/InterproscanIO
2024-11-14 12:53:24,316 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/InterproscanIO
2024-11-14 12:53:24,317 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/InterproscanIO
2024-11-14 12:53:24,318 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO
2024-11-14 12:53:24,319 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO
2024-11-14 12:53:24,320 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO
2024-11-14 12:53:24,321 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO
2024-11-14 12:53:24,322 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO
2024-11-14 12:53:24,324 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO
2024-11-14 12:53:24,325 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO
2024-11-14 12:53:24,326 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO
2024-11-14 12:53:24,327 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO
2024-11-14 12:53:24,328 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO
2024-11-14 12:53:24,329 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO
2024-11-14 12:53:24,331 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO
2024-11-14 12:53:24,332 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO
2024-11-14 12:53:24,333 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO
2024-11-14 12:53:24,334 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO
2024-11-14 12:53:24,335 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO
2024-11-14 12:53:24,336 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO
2024-11-14 12:53:24,338 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_utils.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO
2024-11-14 12:53:24,339 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO
2024-11-14 12:53:24,340 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlatIO.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO
2024-11-14 12:53:24,341 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/HHsuiteIO
2024-11-14 12:53:24,342 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HHsuiteIO
2024-11-14 12:53:24,343 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HHsuiteIO
2024-11-14 12:53:24,345 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model
2024-11-14 12:53:24,345 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model
2024-11-14 12:53:24,346 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/hit.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model
2024-11-14 12:53:24,348 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/_base.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model
2024-11-14 12:53:24,349 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/query.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model
2024-11-14 12:53:24,350 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model
2024-11-14 12:53:24,352 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Blast
2024-11-14 12:53:24,352 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Blast
2024-11-14 12:53:24,353 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/NCBIXML.py -> build/bdist.linux-riscv64/wheel/Bio/Blast
2024-11-14 12:53:24,355 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/Applications.py -> build/bdist.linux-riscv64/wheel/Bio/Blast
2024-11-14 12:53:24,356 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/NCBIWWW.py -> build/bdist.linux-riscv64/wheel/Bio/Blast
2024-11-14 12:53:24,357 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/Record.py -> build/bdist.linux-riscv64/wheel/Bio/Blast
2024-11-14 12:53:24,358 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/_utils.py -> build/bdist.linux-riscv64/wheel/Bio
2024-11-14 12:53:24,360 root INFO creating build/bdist.linux-riscv64/wheel/Bio/UniProt
2024-11-14 12:53:24,360 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/UniProt/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/UniProt
2024-11-14 12:53:24,361 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/UniProt/GOA.py -> build/bdist.linux-riscv64/wheel/Bio/UniProt
2024-11-14 12:53:24,363 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SwissProt
2024-11-14 12:53:24,363 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SwissProt/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SwissProt
2024-11-14 12:53:24,365 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SwissProt/KeyWList.py -> build/bdist.linux-riscv64/wheel/Bio/SwissProt
2024-11-14 12:53:24,366 root INFO creating build/bdist.linux-riscv64/wheel/Bio/codonalign
2024-11-14 12:53:24,367 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/codonalign/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/codonalign
2024-11-14 12:53:24,368 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/codonalign/codonalignment.py -> build/bdist.linux-riscv64/wheel/Bio/codonalign
2024-11-14 12:53:24,369 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/codonalign/codonseq.py -> build/bdist.linux-riscv64/wheel/Bio/codonalign
2024-11-14 12:53:24,370 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/py.typed -> build/bdist.linux-riscv64/wheel/Bio
2024-11-14 12:53:24,372 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Sequencing
2024-11-14 12:53:24,372 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing
2024-11-14 12:53:24,373 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Phd.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing
2024-11-14 12:53:24,375 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications
2024-11-14 12:53:24,375 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications
2024-11-14 12:53:24,376 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications/_Novoalign.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications
2024-11-14 12:53:24,378 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications/_samtools.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications
2024-11-14 12:53:24,379 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications/_bwa.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications
2024-11-14 12:53:24,380 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Ace.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing
2024-11-14 12:53:24,382 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,383 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,384 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,386 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_index.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,387 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,388 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,390 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/PhdIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,391 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,392 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/IgIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,393 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,394 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/Interfaces.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,396 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/TabIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,397 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,398 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,399 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SwissIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,400 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/NibIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,401 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SffIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,403 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/AbiIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,404 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/PdbIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,406 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/AceIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,407 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/QualityIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,408 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/GckIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,410 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,411 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/PirIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,412 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO
2024-11-14 12:53:24,414 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG
2024-11-14 12:53:24,414 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Map
2024-11-14 12:53:24,415 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Map/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/Map
2024-11-14 12:53:24,416 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG
2024-11-14 12:53:24,417 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Compound
2024-11-14 12:53:24,418 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/Compound
2024-11-14 12:53:24,419 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/REST.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG
2024-11-14 12:53:24,420 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Gene
2024-11-14 12:53:24,421 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/Gene
2024-11-14 12:53:24,423 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML
2024-11-14 12:53:24,424 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML
2024-11-14 12:53:24,425 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML
2024-11-14 12:53:24,427 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML
2024-11-14 12:53:24,429 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Enzyme
2024-11-14 12:53:24,429 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/Enzyme
2024-11-14 12:53:24,431 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SeqUtils
2024-11-14 12:53:24,431 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils
2024-11-14 12:53:24,433 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils
2024-11-14 12:53:24,434 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/lcc.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils
2024-11-14 12:53:24,435 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils
2024-11-14 12:53:24,436 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils
2024-11-14 12:53:24,437 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils
2024-11-14 12:53:24,439 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils
2024-11-14 12:53:24,440 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Geo
2024-11-14 12:53:24,441 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Geo/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Geo
2024-11-14 12:53:24,442 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Geo/Record.py -> build/bdist.linux-riscv64/wheel/Bio/Geo
2024-11-14 12:53:24,443 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez
2024-11-14 12:53:24,444 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Entrez
2024-11-14 12:53:24,446 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,447 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,449 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,450 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,452 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,453 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,454 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,456 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,457 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,458 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isodia.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,460 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,461 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,464 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,465 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,466 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,467 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,468 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,469 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,470 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,472 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,473 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,474 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,475 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,477 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,478 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,479 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,480 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,481 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,482 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,484 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,485 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,486 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,487 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,488 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,489 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,490 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,491 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,493 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,494 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,495 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,496 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,497 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,498 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,500 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,501 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,502 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,503 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,504 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,506 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,507 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,508 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,509 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,510 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,511 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,513 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,514 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,515 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,516 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,517 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,518 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,519 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,521 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,523 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,524 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,525 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,526 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,527 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,528 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,529 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,530 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,532 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,533 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,534 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,536 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,537 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,538 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,539 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,540 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,541 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,542 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,544 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,546 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,547 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,549 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,550 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,552 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,553 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,554 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,555 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,556 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,557 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,559 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,560 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,561 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,562 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,563 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,565 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pmc-1.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,566 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,567 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,568 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,569 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,570 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,572 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,573 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,574 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,575 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,576 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mmlextra.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,577 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,579 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,580 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,581 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,582 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_180601.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,584 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,585 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,586 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PDB_General.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,587 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/math.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,588 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,590 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,591 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,592 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,593 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,594 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,595 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,597 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,598 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/link.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,599 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,602 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-common1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,606 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,607 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,608 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,610 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,612 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,613 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,614 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,615 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,616 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,617 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,620 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml3-qname1.mod -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,621 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,622 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-section1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,623 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,625 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,628 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,629 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,632 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,633 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,635 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,636 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,638 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,639 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,640 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,641 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,644 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,647 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,649 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,651 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,654 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,655 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,657 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,658 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/egquery.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,660 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/SP_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,661 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,662 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,663 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,664 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,665 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,668 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,669 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,670 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,671 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,672 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,674 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,675 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,676 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,678 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,680 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,681 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,683 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,685 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isolat2.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,687 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/backmatter.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,688 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,689 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,693 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-display1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,695 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,696 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,697 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,699 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,700 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,701 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,702 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,705 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eSearch_020511.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,706 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,707 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,708 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,709 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,710 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,712 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,713 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,714 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,717 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,718 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,719 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,721 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,722 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,724 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,726 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,727 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/section.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,729 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,731 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,732 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,733 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,734 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,735 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,741 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,743 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,744 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,746 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,747 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isocyr1.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,749 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,751 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,752 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isobox.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,754 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/default-classes.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,756 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,758 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,766 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathmlsetup.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,768 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,769 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,770 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,777 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,779 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,780 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,785 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
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2024-11-14 12:53:24,789 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,790 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,791 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,792 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,793 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,794 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,795 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,797 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,798 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,799 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,800 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs
2024-11-14 12:53:24,801 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/Parser.py -> build/bdist.linux-riscv64/wheel/Bio/Entrez
2024-11-14 12:53:24,803 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez/XSDs
2024-11-14 12:53:24,804 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/XSDs
2024-11-14 12:53:24,805 root INFO creating build/bdist.linux-riscv64/wheel/Bio/TogoWS
2024-11-14 12:53:24,806 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/TogoWS/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/TogoWS
2024-11-14 12:53:24,807 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,808 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Superimposer.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,809 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Selection.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,811 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,812 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,813 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PDB/mmtf
2024-11-14 12:53:24,814 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/PDB/mmtf
2024-11-14 12:53:24,815 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-riscv64/wheel/Bio/PDB/mmtf
2024-11-14 12:53:24,817 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-riscv64/wheel/Bio/PDB/mmtf
2024-11-14 12:53:24,818 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ccealign.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,820 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/SCADIO.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,821 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PICIO.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,823 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ccealignmodule.c -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,824 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/internal_coords.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,827 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/NACCESS.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,828 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Residue.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,829 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/vectors.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,831 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/kdtrees.c -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,833 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,834 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/StructureAlignment.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,835 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/mmcifio.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,837 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Polypeptide.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,838 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/cealign.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,839 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/DSSP.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,841 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Chain.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,842 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PSEA.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,843 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/qcprot.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,844 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ic_data.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,846 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Dice.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,847 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/StructureBuilder.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,849 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/kdtrees.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,850 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/SASA.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,852 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,853 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/FragmentMapper.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,854 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Model.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,856 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ic_rebuild.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,857 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Entity.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,859 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/NeighborSearch.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,860 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/MMCIFParser.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,861 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/HSExposure.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,863 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Atom.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,864 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBExceptions.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,865 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBIO.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,867 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBParser.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,868 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBList.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,869 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Structure.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,871 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ResidueDepth.py -> build/bdist.linux-riscv64/wheel/Bio/PDB
2024-11-14 12:53:24,872 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Seq.py -> build/bdist.linux-riscv64/wheel/Bio
2024-11-14 12:53:24,874 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Cluster
2024-11-14 12:53:24,875 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Cluster
2024-11-14 12:53:24,876 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/clustermodule.c -> build/bdist.linux-riscv64/wheel/Bio/Cluster
2024-11-14 12:53:24,878 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/cluster.c -> build/bdist.linux-riscv64/wheel/Bio/Cluster
2024-11-14 12:53:24,880 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/_cluster.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/Cluster
2024-11-14 12:53:24,883 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/cluster.h -> build/bdist.linux-riscv64/wheel/Bio/Cluster
2024-11-14 12:53:24,885 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SVDSuperimposer
2024-11-14 12:53:24,886 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SVDSuperimposer
2024-11-14 12:53:24,887 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Affy
2024-11-14 12:53:24,888 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Affy/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Affy
2024-11-14 12:53:24,889 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Affy/CelFile.py -> build/bdist.linux-riscv64/wheel/Bio/Affy
2024-11-14 12:53:24,891 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Pathway
2024-11-14 12:53:24,892 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Pathway
2024-11-14 12:53:24,894 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep
2024-11-14 12:53:24,895 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep
2024-11-14 12:53:24,896 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep
2024-11-14 12:53:24,897 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep
2024-11-14 12:53:24,898 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqFeature.py -> build/bdist.linux-riscv64/wheel/Bio
2024-11-14 12:53:24,900 root INFO creating build/bdist.linux-riscv64/wheel/Bio/AlignIO
2024-11-14 12:53:24,901 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO
2024-11-14 12:53:24,902 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/MauveIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO
2024-11-14 12:53:24,904 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO
2024-11-14 12:53:24,905 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO
2024-11-14 12:53:24,907 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/Interfaces.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO
2024-11-14 12:53:24,908 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO
2024-11-14 12:53:24,909 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO
2024-11-14 12:53:24,910 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/NexusIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO
2024-11-14 12:53:24,912 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/MafIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO
2024-11-14 12:53:24,914 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/MsfIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO
2024-11-14 12:53:24,916 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO
2024-11-14 12:53:24,918 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Medline
2024-11-14 12:53:24,918 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Medline/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Medline
2024-11-14 12:53:24,920 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/bgzf.py -> build/bdist.linux-riscv64/wheel/Bio
2024-11-14 12:53:24,922 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PopGen
2024-11-14 12:53:24,922 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen
2024-11-14 12:53:24,924 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop
2024-11-14 12:53:24,925 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop
2024-11-14 12:53:24,926 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop
2024-11-14 12:53:24,928 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/EasyController.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop
2024-11-14 12:53:24,929 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/Controller.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop
2024-11-14 12:53:24,931 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop
2024-11-14 12:53:24,933 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Emboss
2024-11-14 12:53:24,934 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-riscv64/wheel/Bio/Emboss
2024-11-14 12:53:24,935 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Emboss/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Emboss
2024-11-14 12:53:24,937 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Emboss/Applications.py -> build/bdist.linux-riscv64/wheel/Bio/Emboss
2024-11-14 12:53:24,939 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Emboss/Primer3.py -> build/bdist.linux-riscv64/wheel/Bio/Emboss
2024-11-14 12:53:24,940 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs
2024-11-14 12:53:24,941 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/meme.py -> build/bdist.linux-riscv64/wheel/Bio/motifs
2024-11-14 12:53:24,942 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/motifs
2024-11-14 12:53:24,944 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/pfm.py -> build/bdist.linux-riscv64/wheel/Bio/motifs
2024-11-14 12:53:24,945 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/matrix.py -> build/bdist.linux-riscv64/wheel/Bio/motifs
2024-11-14 12:53:24,946 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/transfac.py -> build/bdist.linux-riscv64/wheel/Bio/motifs
2024-11-14 12:53:24,948 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/alignace.py -> build/bdist.linux-riscv64/wheel/Bio/motifs
2024-11-14 12:53:24,949 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/_pwm.c -> build/bdist.linux-riscv64/wheel/Bio/motifs
2024-11-14 12:53:24,950 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/minimal.py -> build/bdist.linux-riscv64/wheel/Bio/motifs
2024-11-14 12:53:24,951 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/clusterbuster.py -> build/bdist.linux-riscv64/wheel/Bio/motifs
2024-11-14 12:53:24,952 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/mast.py -> build/bdist.linux-riscv64/wheel/Bio/motifs
2024-11-14 12:53:24,953 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/thresholds.py -> build/bdist.linux-riscv64/wheel/Bio/motifs
2024-11-14 12:53:24,955 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/xms.py -> build/bdist.linux-riscv64/wheel/Bio/motifs
2024-11-14 12:53:24,956 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/_pwm.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/motifs
2024-11-14 12:53:24,958 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs/applications
2024-11-14 12:53:24,958 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/applications/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/motifs/applications
2024-11-14 12:53:24,959 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/applications/_xxmotif.py -> build/bdist.linux-riscv64/wheel/Bio/motifs/applications
2024-11-14 12:53:24,961 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs/jaspar
2024-11-14 12:53:24,962 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar/db.py -> build/bdist.linux-riscv64/wheel/Bio/motifs/jaspar
2024-11-14 12:53:24,963 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/motifs/jaspar
2024-11-14 12:53:24,965 root INFO creating build/bdist.linux-riscv64/wheel/Bio/NMR
2024-11-14 12:53:24,966 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NMR/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/NMR
2024-11-14 12:53:24,967 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NMR/xpktools.py -> build/bdist.linux-riscv64/wheel/Bio/NMR
2024-11-14 12:53:24,968 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NMR/NOEtools.py -> build/bdist.linux-riscv64/wheel/Bio/NMR
2024-11-14 12:53:24,969 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/MaxEntropy.py -> build/bdist.linux-riscv64/wheel/Bio
2024-11-14 12:53:24,970 root INFO creating build/bdist.linux-riscv64/wheel/Bio/HMM
2024-11-14 12:53:24,971 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/HMM
2024-11-14 12:53:24,972 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/MarkovModel.py -> build/bdist.linux-riscv64/wheel/Bio/HMM
2024-11-14 12:53:24,974 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/DynamicProgramming.py -> build/bdist.linux-riscv64/wheel/Bio/HMM
2024-11-14 12:53:24,975 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/Utilities.py -> build/bdist.linux-riscv64/wheel/Bio/HMM
2024-11-14 12:53:24,976 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/Trainer.py -> build/bdist.linux-riscv64/wheel/Bio/HMM
2024-11-14 12:53:24,977 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Compass
2024-11-14 12:53:24,978 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Compass/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Compass
2024-11-14 12:53:24,979 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:24,980 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.c -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:24,983 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:24,986 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/clustal.py -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:24,987 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/hhr.py -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:24,988 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bigmaf.py -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:24,990 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/exonerate.py -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:24,991 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices
2024-11-14 12:53:24,992 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices
2024-11-14 12:53:24,993 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:24,994 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:24,995 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:24,996 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:24,997 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:24,998 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,000 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,001 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,002 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,003 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,004 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,005 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,006 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,007 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,008 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,009 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,011 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,012 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,013 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,014 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,015 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,016 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,017 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,018 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,020 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,021 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,022 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,023 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,024 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,025 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,026 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data
2024-11-14 12:53:25,028 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/AlignInfo.py -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:25,029 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/sam.py -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:25,030 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_codonaligner.c -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:25,032 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/stockholm.py -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:25,034 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_codonaligner.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:25,035 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/tabular.py -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:25,037 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/Applications
2024-11-14 12:53:25,037 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Dialign.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications
2024-11-14 12:53:25,039 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications
2024-11-14 12:53:25,040 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_ClustalOmega.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications
2024-11-14 12:53:25,041 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_TCoffee.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications
2024-11-14 12:53:25,042 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_MSAProbs.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications
2024-11-14 12:53:25,043 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Prank.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications
2024-11-14 12:53:25,045 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Muscle.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications
2024-11-14 12:53:25,047 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Probcons.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications
2024-11-14 12:53:25,049 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Clustalw.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications
2024-11-14 12:53:25,050 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Mafft.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications
2024-11-14 12:53:25,052 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/a2m.py -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:25,054 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bigbed.py -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:25,056 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/nexus.py -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:25,058 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/analysis.py -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:25,060 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bigpsl.py -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:25,061 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/mauve.py -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:25,063 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/psl.py -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:25,065 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/maf.py -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:25,066 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bed.py -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:25,068 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/phylip.py -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:25,070 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/msf.py -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:25,071 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/chain.py -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:25,074 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/emboss.py -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:25,075 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/fasta.py -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:25,076 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:25,081 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/interfaces.py -> build/bdist.linux-riscv64/wheel/Bio/Align
2024-11-14 12:53:25,083 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/cpairwise2.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio
2024-11-14 12:53:25,085 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/LogisticRegression.py -> build/bdist.linux-riscv64/wheel/Bio
2024-11-14 12:53:25,087 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Restriction
2024-11-14 12:53:25,088 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Restriction
2024-11-14 12:53:25,089 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/PrintFormat.py -> build/bdist.linux-riscv64/wheel/Bio/Restriction
2024-11-14 12:53:25,091 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/Restriction.py -> build/bdist.linux-riscv64/wheel/Bio/Restriction
2024-11-14 12:53:25,093 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-riscv64/wheel/Bio/Restriction
2024-11-14 12:53:25,098 root INFO running install_egg_info
2024-11-14 12:53:25,109 root INFO Copying biopython.egg-info to build/bdist.linux-riscv64/wheel/biopython-1.82-py3.12.egg-info
2024-11-14 12:53:25,115 root INFO running install_scripts
2024-11-14 12:53:25,151 root INFO creating build/bdist.linux-riscv64/wheel/biopython-1.82.dist-info/WHEEL
2024-11-14 12:53:25,153 wheel INFO creating '/home/buildozer/aports/community/py3-biopython/src/biopython-1.82/.dist/.tmp-z_dw8lwp/biopython-1.82-cp312-cp312-linux_riscv64.whl' and adding 'build/bdist.linux-riscv64/wheel' to it
2024-11-14 12:53:25,155 wheel INFO adding 'Bio/File.py'
2024-11-14 12:53:25,157 wheel INFO adding 'Bio/LogisticRegression.py'
2024-11-14 12:53:25,158 wheel INFO adding 'Bio/MarkovModel.py'
2024-11-14 12:53:25,160 wheel INFO adding 'Bio/MaxEntropy.py'
2024-11-14 12:53:25,161 wheel INFO adding 'Bio/NaiveBayes.py'
2024-11-14 12:53:25,163 wheel INFO adding 'Bio/Seq.py'
2024-11-14 12:53:25,168 wheel INFO adding 'Bio/SeqFeature.py'
2024-11-14 12:53:25,171 wheel INFO adding 'Bio/SeqRecord.py'
2024-11-14 12:53:25,173 wheel INFO adding 'Bio/__init__.py'
2024-11-14 12:53:25,174 wheel INFO adding 'Bio/_utils.py'
2024-11-14 12:53:25,176 wheel INFO adding 'Bio/bgzf.py'
2024-11-14 12:53:25,178 wheel INFO adding 'Bio/cpairwise2.cpython-312-riscv64-linux-musl.so'
2024-11-14 12:53:25,181 wheel INFO adding 'Bio/cpairwise2module.c'
2024-11-14 12:53:25,182 wheel INFO adding 'Bio/kNN.py'
2024-11-14 12:53:25,184 wheel INFO adding 'Bio/pairwise2.py'
2024-11-14 12:53:25,187 wheel INFO adding 'Bio/py.typed'
2024-11-14 12:53:25,189 wheel INFO adding 'Bio/Affy/CelFile.py'
2024-11-14 12:53:25,191 wheel INFO adding 'Bio/Affy/__init__.py'
2024-11-14 12:53:25,192 wheel INFO adding 'Bio/Align/AlignInfo.py'
2024-11-14 12:53:25,195 wheel INFO adding 'Bio/Align/__init__.py'
2024-11-14 12:53:25,200 wheel INFO adding 'Bio/Align/_codonaligner.c'
2024-11-14 12:53:25,203 wheel INFO adding 'Bio/Align/_codonaligner.cpython-312-riscv64-linux-musl.so'
2024-11-14 12:53:25,207 wheel INFO adding 'Bio/Align/_pairwisealigner.c'
2024-11-14 12:53:25,216 wheel INFO adding 'Bio/Align/_pairwisealigner.cpython-312-riscv64-linux-musl.so'
2024-11-14 12:53:25,225 wheel INFO adding 'Bio/Align/a2m.py'
2024-11-14 12:53:25,226 wheel INFO adding 'Bio/Align/analysis.py'
2024-11-14 12:53:25,228 wheel INFO adding 'Bio/Align/bed.py'
2024-11-14 12:53:25,230 wheel INFO adding 'Bio/Align/bigbed.py'
2024-11-14 12:53:25,233 wheel INFO adding 'Bio/Align/bigmaf.py'
2024-11-14 12:53:25,234 wheel INFO adding 'Bio/Align/bigpsl.py'
2024-11-14 12:53:25,236 wheel INFO adding 'Bio/Align/chain.py'
2024-11-14 12:53:25,238 wheel INFO adding 'Bio/Align/clustal.py'
2024-11-14 12:53:25,239 wheel INFO adding 'Bio/Align/emboss.py'
2024-11-14 12:53:25,241 wheel INFO adding 'Bio/Align/exonerate.py'
2024-11-14 12:53:25,242 wheel INFO adding 'Bio/Align/fasta.py'
2024-11-14 12:53:25,244 wheel INFO adding 'Bio/Align/hhr.py'
2024-11-14 12:53:25,245 wheel INFO adding 'Bio/Align/interfaces.py'
2024-11-14 12:53:25,246 wheel INFO adding 'Bio/Align/maf.py'
2024-11-14 12:53:25,248 wheel INFO adding 'Bio/Align/mauve.py'
2024-11-14 12:53:25,249 wheel INFO adding 'Bio/Align/msf.py'
2024-11-14 12:53:25,251 wheel INFO adding 'Bio/Align/nexus.py'
2024-11-14 12:53:25,252 wheel INFO adding 'Bio/Align/phylip.py'
2024-11-14 12:53:25,253 wheel INFO adding 'Bio/Align/psl.py'
2024-11-14 12:53:25,255 wheel INFO adding 'Bio/Align/sam.py'
2024-11-14 12:53:25,257 wheel INFO adding 'Bio/Align/stockholm.py'
2024-11-14 12:53:25,259 wheel INFO adding 'Bio/Align/tabular.py'
2024-11-14 12:53:25,261 wheel INFO adding 'Bio/Align/Applications/_ClustalOmega.py'
2024-11-14 12:53:25,262 wheel INFO adding 'Bio/Align/Applications/_Clustalw.py'
2024-11-14 12:53:25,264 wheel INFO adding 'Bio/Align/Applications/_Dialign.py'
2024-11-14 12:53:25,265 wheel INFO adding 'Bio/Align/Applications/_MSAProbs.py'
2024-11-14 12:53:25,266 wheel INFO adding 'Bio/Align/Applications/_Mafft.py'
2024-11-14 12:53:25,269 wheel INFO adding 'Bio/Align/Applications/_Muscle.py'
2024-11-14 12:53:25,271 wheel INFO adding 'Bio/Align/Applications/_Prank.py'
2024-11-14 12:53:25,272 wheel INFO adding 'Bio/Align/Applications/_Probcons.py'
2024-11-14 12:53:25,273 wheel INFO adding 'Bio/Align/Applications/_TCoffee.py'
2024-11-14 12:53:25,274 wheel INFO adding 'Bio/Align/Applications/__init__.py'
2024-11-14 12:53:25,275 wheel INFO adding 'Bio/Align/substitution_matrices/__init__.py'
2024-11-14 12:53:25,277 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER22'
2024-11-14 12:53:25,278 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER6'
2024-11-14 12:53:25,279 wheel INFO adding 'Bio/Align/substitution_matrices/data/BENNER74'
2024-11-14 12:53:25,280 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLASTN'
2024-11-14 12:53:25,281 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLASTP'
2024-11-14 12:53:25,282 wheel INFO adding 'Bio/Align/substitution_matrices/data/BLOSUM45'
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2024-11-14 12:53:25,965 wheel INFO adding 'Bio/Phylo/PAML/chi2.py'
2024-11-14 12:53:25,967 wheel INFO adding 'Bio/Phylo/PAML/codeml.py'
2024-11-14 12:53:25,968 wheel INFO adding 'Bio/Phylo/PAML/yn00.py'
2024-11-14 12:53:25,970 wheel INFO adding 'Bio/PopGen/__init__.py'
2024-11-14 12:53:25,972 wheel INFO adding 'Bio/PopGen/GenePop/Controller.py'
2024-11-14 12:53:25,974 wheel INFO adding 'Bio/PopGen/GenePop/EasyController.py'
2024-11-14 12:53:25,976 wheel INFO adding 'Bio/PopGen/GenePop/FileParser.py'
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2024-11-14 12:53:25,979 wheel INFO adding 'Bio/PopGen/GenePop/__init__.py'
2024-11-14 12:53:25,981 wheel INFO adding 'Bio/Restriction/PrintFormat.py'
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2024-11-14 12:53:25,993 wheel INFO adding 'Bio/Restriction/Restriction_Dictionary.py'
2024-11-14 12:53:26,006 wheel INFO adding 'Bio/Restriction/__init__.py'
2024-11-14 12:53:26,007 wheel INFO adding 'Bio/SCOP/Cla.py'
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2024-11-14 12:53:26,013 wheel INFO adding 'Bio/SCOP/Residues.py'
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2024-11-14 12:53:26,016 wheel INFO adding 'Bio/SVDSuperimposer/__init__.py'
2024-11-14 12:53:26,018 wheel INFO adding 'Bio/SearchIO/BlatIO.py'
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2024-11-14 12:53:26,027 wheel INFO adding 'Bio/SearchIO/BlastIO/__init__.py'
2024-11-14 12:53:26,029 wheel INFO adding 'Bio/SearchIO/BlastIO/blast_tab.py'
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2024-11-14 12:53:26,034 wheel INFO adding 'Bio/SearchIO/ExonerateIO/__init__.py'
2024-11-14 12:53:26,036 wheel INFO adding 'Bio/SearchIO/ExonerateIO/_base.py'
2024-11-14 12:53:26,038 wheel INFO adding 'Bio/SearchIO/ExonerateIO/exonerate_cigar.py'
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2024-11-14 12:53:26,041 wheel INFO adding 'Bio/SearchIO/ExonerateIO/exonerate_vulgar.py'
2024-11-14 12:53:26,043 wheel INFO adding 'Bio/SearchIO/HHsuiteIO/__init__.py'
2024-11-14 12:53:26,044 wheel INFO adding 'Bio/SearchIO/HHsuiteIO/hhsuite2_text.py'
2024-11-14 12:53:26,046 wheel INFO adding 'Bio/SearchIO/HmmerIO/__init__.py'
2024-11-14 12:53:26,048 wheel INFO adding 'Bio/SearchIO/HmmerIO/_base.py'
2024-11-14 12:53:26,049 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer2_text.py'
2024-11-14 12:53:26,050 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer3_domtab.py'
2024-11-14 12:53:26,052 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer3_tab.py'
2024-11-14 12:53:26,054 wheel INFO adding 'Bio/SearchIO/HmmerIO/hmmer3_text.py'
2024-11-14 12:53:26,055 wheel INFO adding 'Bio/SearchIO/InterproscanIO/__init__.py'
2024-11-14 12:53:26,057 wheel INFO adding 'Bio/SearchIO/InterproscanIO/interproscan_xml.py'
2024-11-14 12:53:26,059 wheel INFO adding 'Bio/SearchIO/_model/__init__.py'
2024-11-14 12:53:26,060 wheel INFO adding 'Bio/SearchIO/_model/_base.py'
2024-11-14 12:53:26,062 wheel INFO adding 'Bio/SearchIO/_model/hit.py'
2024-11-14 12:53:26,064 wheel INFO adding 'Bio/SearchIO/_model/hsp.py'
2024-11-14 12:53:26,067 wheel INFO adding 'Bio/SearchIO/_model/query.py'
2024-11-14 12:53:26,069 wheel INFO adding 'Bio/SeqIO/AbiIO.py'
2024-11-14 12:53:26,071 wheel INFO adding 'Bio/SeqIO/AceIO.py'
2024-11-14 12:53:26,073 wheel INFO adding 'Bio/SeqIO/FastaIO.py'
2024-11-14 12:53:26,075 wheel INFO adding 'Bio/SeqIO/GckIO.py'
2024-11-14 12:53:26,076 wheel INFO adding 'Bio/SeqIO/IgIO.py'
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2024-11-14 12:53:26,080 wheel INFO adding 'Bio/SeqIO/Interfaces.py'
2024-11-14 12:53:26,081 wheel INFO adding 'Bio/SeqIO/NibIO.py'
2024-11-14 12:53:26,083 wheel INFO adding 'Bio/SeqIO/PdbIO.py'
2024-11-14 12:53:26,084 wheel INFO adding 'Bio/SeqIO/PhdIO.py'
2024-11-14 12:53:26,086 wheel INFO adding 'Bio/SeqIO/PirIO.py'
2024-11-14 12:53:26,088 wheel INFO adding 'Bio/SeqIO/QualityIO.py'
2024-11-14 12:53:26,091 wheel INFO adding 'Bio/SeqIO/SeqXmlIO.py'
2024-11-14 12:53:26,093 wheel INFO adding 'Bio/SeqIO/SffIO.py'
2024-11-14 12:53:26,096 wheel INFO adding 'Bio/SeqIO/SnapGeneIO.py'
2024-11-14 12:53:26,097 wheel INFO adding 'Bio/SeqIO/SwissIO.py'
2024-11-14 12:53:26,098 wheel INFO adding 'Bio/SeqIO/TabIO.py'
2024-11-14 12:53:26,100 wheel INFO adding 'Bio/SeqIO/TwoBitIO.py'
2024-11-14 12:53:26,101 wheel INFO adding 'Bio/SeqIO/UniprotIO.py'
2024-11-14 12:53:26,103 wheel INFO adding 'Bio/SeqIO/XdnaIO.py'
2024-11-14 12:53:26,105 wheel INFO adding 'Bio/SeqIO/__init__.py'
2024-11-14 12:53:26,107 wheel INFO adding 'Bio/SeqIO/_index.py'
2024-11-14 12:53:26,109 wheel INFO adding 'Bio/SeqIO/_twoBitIO.c'
2024-11-14 12:53:26,111 wheel INFO adding 'Bio/SeqIO/_twoBitIO.cpython-312-riscv64-linux-musl.so'
2024-11-14 12:53:26,113 wheel INFO adding 'Bio/SeqUtils/CheckSum.py'
2024-11-14 12:53:26,114 wheel INFO adding 'Bio/SeqUtils/IsoelectricPoint.py'
2024-11-14 12:53:26,116 wheel INFO adding 'Bio/SeqUtils/MeltingTemp.py'
2024-11-14 12:53:26,118 wheel INFO adding 'Bio/SeqUtils/ProtParam.py'
2024-11-14 12:53:26,119 wheel INFO adding 'Bio/SeqUtils/ProtParamData.py'
2024-11-14 12:53:26,121 wheel INFO adding 'Bio/SeqUtils/__init__.py'
2024-11-14 12:53:26,123 wheel INFO adding 'Bio/SeqUtils/lcc.py'
2024-11-14 12:53:26,124 wheel INFO adding 'Bio/Sequencing/Ace.py'
2024-11-14 12:53:26,126 wheel INFO adding 'Bio/Sequencing/Phd.py'
2024-11-14 12:53:26,127 wheel INFO adding 'Bio/Sequencing/__init__.py'
2024-11-14 12:53:26,128 wheel INFO adding 'Bio/Sequencing/Applications/_Novoalign.py'
2024-11-14 12:53:26,129 wheel INFO adding 'Bio/Sequencing/Applications/__init__.py'
2024-11-14 12:53:26,130 wheel INFO adding 'Bio/Sequencing/Applications/_bwa.py'
2024-11-14 12:53:26,133 wheel INFO adding 'Bio/Sequencing/Applications/_samtools.py'
2024-11-14 12:53:26,135 wheel INFO adding 'Bio/SwissProt/KeyWList.py'
2024-11-14 12:53:26,137 wheel INFO adding 'Bio/SwissProt/__init__.py'
2024-11-14 12:53:26,139 wheel INFO adding 'Bio/TogoWS/__init__.py'
2024-11-14 12:53:26,141 wheel INFO adding 'Bio/UniGene/__init__.py'
2024-11-14 12:53:26,143 wheel INFO adding 'Bio/UniProt/GOA.py'
2024-11-14 12:53:26,144 wheel INFO adding 'Bio/UniProt/__init__.py'
2024-11-14 12:53:26,146 wheel INFO adding 'Bio/codonalign/__init__.py'
2024-11-14 12:53:26,148 wheel INFO adding 'Bio/codonalign/codonalignment.py'
2024-11-14 12:53:26,150 wheel INFO adding 'Bio/codonalign/codonseq.py'
2024-11-14 12:53:26,152 wheel INFO adding 'Bio/motifs/__init__.py'
2024-11-14 12:53:26,154 wheel INFO adding 'Bio/motifs/_pwm.c'
2024-11-14 12:53:26,155 wheel INFO adding 'Bio/motifs/_pwm.cpython-312-riscv64-linux-musl.so'
2024-11-14 12:53:26,157 wheel INFO adding 'Bio/motifs/alignace.py'
2024-11-14 12:53:26,159 wheel INFO adding 'Bio/motifs/clusterbuster.py'
2024-11-14 12:53:26,160 wheel INFO adding 'Bio/motifs/mast.py'
2024-11-14 12:53:26,162 wheel INFO adding 'Bio/motifs/matrix.py'
2024-11-14 12:53:26,165 wheel INFO adding 'Bio/motifs/meme.py'
2024-11-14 12:53:26,166 wheel INFO adding 'Bio/motifs/minimal.py'
2024-11-14 12:53:26,168 wheel INFO adding 'Bio/motifs/pfm.py'
2024-11-14 12:53:26,170 wheel INFO adding 'Bio/motifs/thresholds.py'
2024-11-14 12:53:26,172 wheel INFO adding 'Bio/motifs/transfac.py'
2024-11-14 12:53:26,174 wheel INFO adding 'Bio/motifs/xms.py'
2024-11-14 12:53:26,176 wheel INFO adding 'Bio/motifs/applications/__init__.py'
2024-11-14 12:53:26,178 wheel INFO adding 'Bio/motifs/applications/_xxmotif.py'
2024-11-14 12:53:26,180 wheel INFO adding 'Bio/motifs/jaspar/__init__.py'
2024-11-14 12:53:26,183 wheel INFO adding 'Bio/motifs/jaspar/db.py'
2024-11-14 12:53:26,185 wheel INFO adding 'Bio/phenotype/__init__.py'
2024-11-14 12:53:26,187 wheel INFO adding 'Bio/phenotype/phen_micro.py'
2024-11-14 12:53:26,190 wheel INFO adding 'Bio/phenotype/pm_fitting.py'
2024-11-14 12:53:26,192 wheel INFO adding 'BioSQL/BioSeq.py'
2024-11-14 12:53:26,194 wheel INFO adding 'BioSQL/BioSeqDatabase.py'
2024-11-14 12:53:26,197 wheel INFO adding 'BioSQL/DBUtils.py'
2024-11-14 12:53:26,199 wheel INFO adding 'BioSQL/Loader.py'
2024-11-14 12:53:26,202 wheel INFO adding 'BioSQL/__init__.py'
2024-11-14 12:53:26,203 wheel INFO adding 'BioSQL/py.typed'
2024-11-14 12:53:26,206 wheel INFO adding 'biopython-1.82.dist-info/LICENSE'
2024-11-14 12:53:26,207 wheel INFO adding 'biopython-1.82.dist-info/LICENSE.rst'
2024-11-14 12:53:26,209 wheel INFO adding 'biopython-1.82.dist-info/METADATA'
2024-11-14 12:53:26,210 wheel INFO adding 'biopython-1.82.dist-info/WHEEL'
2024-11-14 12:53:26,211 wheel INFO adding 'biopython-1.82.dist-info/top_level.txt'
2024-11-14 12:53:26,223 wheel INFO adding 'biopython-1.82.dist-info/RECORD'
2024-11-14 12:53:26,237 root INFO removing build/bdist.linux-riscv64/wheel
2024-11-14 12:53:26,418 gpep517 INFO The backend produced .dist/biopython-1.82-cp312-cp312-linux_riscv64.whl
biopython-1.82-cp312-cp312-linux_riscv64.whl
>>> py3-biopython: Entering fakeroot...
>>> py3-biopython-pyc*: Running split function pyc...
'usr/lib/python3.12/site-packages/BioSQL/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/BioSQL/__pycache__'
'usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/CAPS/__pycache__'
'usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/GenBank/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Nexus/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Alphabet/__pycache__'
'usr/lib/python3.12/site-packages/Bio/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/__pycache__'
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'usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/ExPASy/__pycache__'
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'usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Phylo/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/Applications/__pycache__'
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'usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Application/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Application/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Blast/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Blast/__pycache__'
'usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__'
'usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Sequencing/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Sequencing/Applications/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Gene/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/KGML/__pycache__'
'usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Enzyme/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqUtils/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Geo/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Geo/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__'
'usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__'
'usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Affy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Affy/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__'
'usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Medline/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Medline/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__'
'usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__'
'usr/lib/python3.12/site-packages/Bio/motifs/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/__pycache__'
'usr/lib/python3.12/site-packages/Bio/motifs/applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/applications/__pycache__'
'usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__'
'usr/lib/python3.12/site-packages/Bio/NMR/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/NMR/__pycache__'
'usr/lib/python3.12/site-packages/Bio/HMM/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/HMM/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Compass/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Compass/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Align/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Align/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/Applications/__pycache__'
'usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__'
>>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc...
>>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc
>>> py3-biopython*: Running postcheck for py3-biopython
>>> py3-biopython*: Preparing package py3-biopython...
>>> py3-biopython*: Stripping binaries
>>> py3-biopython-pyc*: Scanning shared objects
>>> py3-biopython*: Scanning shared objects
>>> py3-biopython-pyc*: Tracing dependencies...
	py3-numpy
	python3
	python3~3.12
>>> py3-biopython-pyc*: Package size: 6.1 MB
>>> py3-biopython-pyc*: Compressing data...
>>> py3-biopython-pyc*: Create checksum...
>>> py3-biopython-pyc*: Create py3-biopython-pyc-1.82-r1.apk
>>> py3-biopython*: Tracing dependencies...
	py3-numpy
	python3
	python3~3.12
	so:libc.musl-riscv64.so.1
>>> py3-biopython*: Package size: 10.8 MB
>>> py3-biopython*: Compressing data...
>>> py3-biopython*: Create checksum...
>>> py3-biopython*: Create py3-biopython-1.82-r1.apk
>>> py3-biopython: Build complete at Thu, 14 Nov 2024 12:53:39 +0000 elapsed time 0h 2m 3s
>>> py3-biopython: Cleaning up srcdir
>>> py3-biopython: Cleaning up pkgdir
>>> py3-biopython: Uninstalling dependencies...
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Executing busybox-1.37.0-r7.trigger
OK: 333 MiB in 98 packages
>>> py3-biopython: Updating the community/riscv64 repository index...
>>> py3-biopython: Signing the index...