>>> py3-biopython: Building community/py3-biopython 1.84-r0 (using abuild 3.14.1-r3) started Tue, 26 Nov 2024 05:06:32 +0000 >>> py3-biopython: Validating /home/buildozer/aports/community/py3-biopython/APKBUILD... >>> py3-biopython: Analyzing dependencies... >>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev (1/29) Installing openblas (0.3.28-r0) (2/29) Installing libbz2 (1.0.8-r6) (3/29) Installing libffi (3.4.6-r0) (4/29) Installing gdbm (1.24-r0) (5/29) Installing xz-libs (5.6.3-r0) (6/29) Installing mpdecimal (4.0.0-r0) (7/29) Installing libpanelw (6.5_p20241006-r3) (8/29) Installing sqlite-libs (3.47.0-r0) (9/29) Installing python3 (3.12.7-r1) (10/29) Installing python3-pycache-pyc0 (3.12.7-r1) (11/29) Installing pyc (3.12.7-r1) (12/29) Installing py3-numpy-pyc (2.1.3-r0) (13/29) Installing python3-pyc (3.12.7-r1) (14/29) Installing py3-numpy (2.1.3-r0) (15/29) Installing py3-installer (0.7.0-r2) (16/29) Installing py3-installer-pyc (0.7.0-r2) (17/29) Installing py3-gpep517 (16-r0) (18/29) Installing py3-gpep517-pyc (16-r0) (19/29) Installing py3-parsing (3.1.4-r0) (20/29) Installing py3-parsing-pyc (3.1.4-r0) (21/29) Installing py3-packaging (24.2-r0) (22/29) Installing py3-packaging-pyc (24.2-r0) (23/29) Installing py3-setuptools (70.3.0-r0) (24/29) Installing py3-setuptools-pyc (70.3.0-r0) (25/29) Installing py3-wheel (0.43.0-r0) (26/29) Installing py3-wheel-pyc (0.43.0-r0) (27/29) Installing py3-numpy-dev (2.1.3-r0) (28/29) Installing python3-dev (3.12.7-r1) (29/29) Installing .makedepends-py3-biopython (20241126.050635) Executing busybox-1.37.0-r8.trigger OK: 617 MiB in 127 packages >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Cleaning up tmpdir >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/v3.20/biopython-1.84.tar.gz Connecting to distfiles.alpinelinux.org (172.105.82.32:443) wget: server returned error: HTTP/1.1 404 Not Found >>> py3-biopython: Fetching https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.84.tar.gz Connecting to files.pythonhosted.org (151.101.192.223:443) Connecting to files.pythonhosted.org (151.101.192.223:443) saving to '/var/cache/distfiles/v3.21/biopython-1.84.tar.gz.part' biopython-1.84.tar.g 98% |******************************* | 24.1M 0:00:00 ETA biopython-1.84.tar.g 100% |********************************| 24.5M 0:00:00 ETA '/var/cache/distfiles/v3.21/biopython-1.84.tar.gz.part' saved >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/v3.20/biopython-1.84.tar.gz >>> py3-biopython: Checking sha512sums... biopython-1.84.tar.gz: OK >>> py3-biopython: Unpacking /var/cache/distfiles/v3.21/biopython-1.84.tar.gz... 2024-11-26 05:06:45,411 gpep517 INFO Building wheel via backend setuptools.build_meta:__legacy__ 2024-11-26 05:06:45,471 root INFO running bdist_wheel 2024-11-26 05:06:45,549 root INFO running build 2024-11-26 05:06:45,549 root INFO running build_py 2024-11-26 05:06:45,561 root INFO creating build 2024-11-26 05:06:45,562 root INFO creating build/lib.linux-riscv64-cpython-312 2024-11-26 05:06:45,562 root INFO creating build/lib.linux-riscv64-cpython-312/Bio 2024-11-26 05:06:45,563 root INFO copying Bio/kNN.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-26 05:06:45,564 root INFO copying Bio/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-26 05:06:45,565 root INFO copying Bio/MarkovModel.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-26 05:06:45,566 root INFO copying Bio/SeqRecord.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-26 05:06:45,568 root INFO copying Bio/pairwise2.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-26 05:06:45,570 root INFO copying Bio/File.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-26 05:06:45,572 root INFO copying Bio/NaiveBayes.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-26 05:06:45,573 root INFO copying Bio/_utils.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-26 05:06:45,574 root INFO copying Bio/Seq.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-26 05:06:45,577 root INFO copying Bio/SeqFeature.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-26 05:06:45,579 root INFO copying Bio/bgzf.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-26 05:06:45,581 root INFO copying Bio/MaxEntropy.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-26 05:06:45,582 root INFO copying Bio/LogisticRegression.py -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-26 05:06:45,584 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Affy 2024-11-26 05:06:45,584 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Affy 2024-11-26 05:06:45,585 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-riscv64-cpython-312/Bio/Affy 2024-11-26 05:06:45,588 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,588 root INFO copying Bio/Align/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,591 root INFO copying Bio/Align/clustal.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,592 root INFO copying Bio/Align/hhr.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,594 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,595 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,596 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,597 root INFO copying Bio/Align/sam.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,598 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,600 root INFO copying Bio/Align/tabular.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,601 root INFO copying Bio/Align/a2m.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,602 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,603 root INFO copying Bio/Align/nexus.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,604 root INFO copying Bio/Align/analysis.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,606 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,607 root INFO copying Bio/Align/mauve.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,608 root INFO copying Bio/Align/psl.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,609 root INFO copying Bio/Align/maf.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,610 root INFO copying Bio/Align/bed.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,611 root INFO copying Bio/Align/phylip.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,613 root INFO copying Bio/Align/msf.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,614 root INFO copying Bio/Align/chain.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,615 root INFO copying Bio/Align/emboss.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,616 root INFO copying Bio/Align/fasta.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,617 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:45,619 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-11-26 05:06:45,620 root INFO copying Bio/Align/Applications/_Dialign.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-11-26 05:06:45,621 root INFO copying Bio/Align/Applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-11-26 05:06:45,622 root INFO copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-11-26 05:06:45,623 root INFO copying Bio/Align/Applications/_TCoffee.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-11-26 05:06:45,624 root INFO copying Bio/Align/Applications/_MSAProbs.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-11-26 05:06:45,625 root INFO copying Bio/Align/Applications/_Prank.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-11-26 05:06:45,626 root INFO copying Bio/Align/Applications/_Muscle.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-11-26 05:06:45,627 root INFO copying Bio/Align/Applications/_Probcons.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-11-26 05:06:45,628 root INFO copying Bio/Align/Applications/_Clustalw.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-11-26 05:06:45,630 root INFO copying Bio/Align/Applications/_Mafft.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/Applications 2024-11-26 05:06:45,631 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices 2024-11-26 05:06:45,632 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices 2024-11-26 05:06:45,634 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-11-26 05:06:45,634 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-11-26 05:06:45,635 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-11-26 05:06:45,637 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-11-26 05:06:45,638 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-11-26 05:06:45,639 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-11-26 05:06:45,640 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-11-26 05:06:45,641 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-11-26 05:06:45,642 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-11-26 05:06:45,643 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-11-26 05:06:45,644 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-11-26 05:06:45,646 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-riscv64-cpython-312/Bio/AlignIO 2024-11-26 05:06:45,647 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Alphabet 2024-11-26 05:06:45,648 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Alphabet 2024-11-26 05:06:45,649 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Application 2024-11-26 05:06:45,650 root INFO copying Bio/Application/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Application 2024-11-26 05:06:45,651 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-11-26 05:06:45,652 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-11-26 05:06:45,653 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-11-26 05:06:45,655 root INFO copying Bio/Blast/Applications.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-11-26 05:06:45,656 root INFO copying Bio/Blast/_writers.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-11-26 05:06:45,657 root INFO copying Bio/Blast/_parser.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-11-26 05:06:45,659 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-riscv64-cpython-312/Bio/Blast 2024-11-26 05:06:45,660 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/CAPS 2024-11-26 05:06:45,661 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/CAPS 2024-11-26 05:06:45,662 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Cluster 2024-11-26 05:06:45,663 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Cluster 2024-11-26 05:06:45,665 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/codonalign 2024-11-26 05:06:45,665 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/codonalign 2024-11-26 05:06:45,666 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-riscv64-cpython-312/Bio/codonalign 2024-11-26 05:06:45,668 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-riscv64-cpython-312/Bio/codonalign 2024-11-26 05:06:45,670 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Compass 2024-11-26 05:06:45,670 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Compass 2024-11-26 05:06:45,672 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Data 2024-11-26 05:06:45,672 root INFO copying Bio/Data/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Data 2024-11-26 05:06:45,673 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-riscv64-cpython-312/Bio/Data 2024-11-26 05:06:45,675 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-riscv64-cpython-312/Bio/Data 2024-11-26 05:06:45,676 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-riscv64-cpython-312/Bio/Data 2024-11-26 05:06:45,677 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Emboss 2024-11-26 05:06:45,678 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss 2024-11-26 05:06:45,679 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss 2024-11-26 05:06:45,680 root INFO copying Bio/Emboss/Applications.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss 2024-11-26 05:06:45,681 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-riscv64-cpython-312/Bio/Emboss 2024-11-26 05:06:45,683 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Entrez 2024-11-26 05:06:45,683 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Entrez 2024-11-26 05:06:45,685 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-riscv64-cpython-312/Bio/Entrez 2024-11-26 05:06:45,686 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-11-26 05:06:45,687 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-11-26 05:06:45,688 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-11-26 05:06:45,689 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-11-26 05:06:45,690 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-11-26 05:06:45,691 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-11-26 05:06:45,692 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-riscv64-cpython-312/Bio/ExPASy 2024-11-26 05:06:45,694 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/GenBank 2024-11-26 05:06:45,695 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank 2024-11-26 05:06:45,696 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank 2024-11-26 05:06:45,697 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank 2024-11-26 05:06:45,698 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-riscv64-cpython-312/Bio/GenBank 2024-11-26 05:06:45,700 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Geo 2024-11-26 05:06:45,701 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Geo 2024-11-26 05:06:45,702 root INFO copying Bio/Geo/Record.py -> build/lib.linux-riscv64-cpython-312/Bio/Geo 2024-11-26 05:06:45,703 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-11-26 05:06:45,704 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-11-26 05:06:45,705 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-11-26 05:06:45,706 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-11-26 05:06:45,707 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-11-26 05:06:45,708 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-11-26 05:06:45,709 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-11-26 05:06:45,711 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics 2024-11-26 05:06:45,712 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-26 05:06:45,713 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-26 05:06:45,714 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-26 05:06:45,715 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-26 05:06:45,717 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-26 05:06:45,718 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-26 05:06:45,719 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-26 05:06:45,720 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-26 05:06:45,721 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-26 05:06:45,722 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-26 05:06:45,723 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-26 05:06:45,725 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-26 05:06:45,726 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram 2024-11-26 05:06:45,728 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/HMM 2024-11-26 05:06:45,728 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2024-11-26 05:06:45,729 root INFO copying Bio/HMM/MarkovModel.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2024-11-26 05:06:45,731 root INFO copying Bio/HMM/DynamicProgramming.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2024-11-26 05:06:45,732 root INFO copying Bio/HMM/Utilities.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2024-11-26 05:06:45,733 root INFO copying Bio/HMM/Trainer.py -> build/lib.linux-riscv64-cpython-312/Bio/HMM 2024-11-26 05:06:45,734 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG 2024-11-26 05:06:45,735 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG 2024-11-26 05:06:45,736 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG 2024-11-26 05:06:45,738 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Compound 2024-11-26 05:06:45,738 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Compound 2024-11-26 05:06:45,740 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Enzyme 2024-11-26 05:06:45,740 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Enzyme 2024-11-26 05:06:45,742 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Gene 2024-11-26 05:06:45,742 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Gene 2024-11-26 05:06:45,744 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/Map 2024-11-26 05:06:45,744 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/Map 2024-11-26 05:06:45,746 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,746 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf 2024-11-26 05:06:45,747 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf 2024-11-26 05:06:45,748 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf 2024-11-26 05:06:45,749 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf 2024-11-26 05:06:45,751 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML 2024-11-26 05:06:45,751 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML 2024-11-26 05:06:45,752 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML 2024-11-26 05:06:45,753 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML 2024-11-26 05:06:45,755 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Medline 2024-11-26 05:06:45,756 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Medline 2024-11-26 05:06:45,757 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-26 05:06:45,758 root INFO copying Bio/motifs/meme.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-26 05:06:45,759 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-26 05:06:45,760 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-26 05:06:45,761 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-26 05:06:45,763 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-26 05:06:45,764 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-26 05:06:45,765 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-26 05:06:45,766 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-26 05:06:45,767 root INFO copying Bio/motifs/mast.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-26 05:06:45,768 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-26 05:06:45,769 root INFO copying Bio/motifs/xms.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-26 05:06:45,771 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/motifs/applications 2024-11-26 05:06:45,771 root INFO copying Bio/motifs/applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/applications 2024-11-26 05:06:45,772 root INFO copying Bio/motifs/applications/_xxmotif.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/applications 2024-11-26 05:06:45,774 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar 2024-11-26 05:06:45,774 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar 2024-11-26 05:06:45,776 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar 2024-11-26 05:06:45,777 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-11-26 05:06:45,778 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-11-26 05:06:45,779 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-11-26 05:06:45,780 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-11-26 05:06:45,782 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-11-26 05:06:45,783 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-11-26 05:06:45,785 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/NMR 2024-11-26 05:06:45,785 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/NMR 2024-11-26 05:06:45,786 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-riscv64-cpython-312/Bio/NMR 2024-11-26 05:06:45,787 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-riscv64-cpython-312/Bio/NMR 2024-11-26 05:06:45,789 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Pathway 2024-11-26 05:06:45,789 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway 2024-11-26 05:06:45,791 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep 2024-11-26 05:06:45,791 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep 2024-11-26 05:06:45,792 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep 2024-11-26 05:06:45,793 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep 2024-11-26 05:06:45,796 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,797 root INFO copying Bio/PDB/binary_cif.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,798 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,800 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,801 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,802 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,803 root INFO copying Bio/PDB/alphafold_db.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,804 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,805 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,808 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,809 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,810 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,811 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,812 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,813 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,814 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,815 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,816 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,817 root INFO copying Bio/PDB/PDBMLParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,818 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,820 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,821 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,822 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,823 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,824 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,825 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,827 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,828 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,829 root INFO copying Bio/PDB/Model.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,830 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,831 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,832 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,833 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,834 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,836 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,837 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,838 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,839 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,840 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,841 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,842 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:45,844 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/phenotype 2024-11-26 05:06:45,844 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/phenotype 2024-11-26 05:06:45,846 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-riscv64-cpython-312/Bio/phenotype 2024-11-26 05:06:45,847 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-riscv64-cpython-312/Bio/phenotype 2024-11-26 05:06:45,848 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PopGen 2024-11-26 05:06:45,849 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen 2024-11-26 05:06:45,850 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2024-11-26 05:06:45,851 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2024-11-26 05:06:45,852 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2024-11-26 05:06:45,853 root INFO copying Bio/PopGen/GenePop/EasyController.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2024-11-26 05:06:45,854 root INFO copying Bio/PopGen/GenePop/Controller.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2024-11-26 05:06:45,856 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop 2024-11-26 05:06:45,857 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Restriction 2024-11-26 05:06:45,858 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction 2024-11-26 05:06:45,859 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction 2024-11-26 05:06:45,860 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction 2024-11-26 05:06:45,862 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-riscv64-cpython-312/Bio/Restriction 2024-11-26 05:06:45,867 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-11-26 05:06:45,867 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-11-26 05:06:45,869 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-11-26 05:06:45,870 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-11-26 05:06:45,871 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-11-26 05:06:45,872 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-11-26 05:06:45,873 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-11-26 05:06:45,874 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-riscv64-cpython-312/Bio/SCOP 2024-11-26 05:06:45,876 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2024-11-26 05:06:45,877 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2024-11-26 05:06:45,878 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2024-11-26 05:06:45,879 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2024-11-26 05:06:45,880 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2024-11-26 05:06:45,881 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO 2024-11-26 05:06:45,883 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2024-11-26 05:06:45,884 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2024-11-26 05:06:45,885 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2024-11-26 05:06:45,886 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2024-11-26 05:06:45,887 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2024-11-26 05:06:45,888 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model 2024-11-26 05:06:45,890 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO 2024-11-26 05:06:45,891 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO 2024-11-26 05:06:45,892 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO 2024-11-26 05:06:45,893 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO 2024-11-26 05:06:45,895 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO 2024-11-26 05:06:45,896 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO 2024-11-26 05:06:45,896 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO 2024-11-26 05:06:45,898 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-11-26 05:06:45,899 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-11-26 05:06:45,900 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-11-26 05:06:45,901 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-11-26 05:06:45,902 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-11-26 05:06:45,904 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-11-26 05:06:45,905 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO 2024-11-26 05:06:45,906 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2024-11-26 05:06:45,907 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2024-11-26 05:06:45,908 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2024-11-26 05:06:45,909 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2024-11-26 05:06:45,910 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2024-11-26 05:06:45,911 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO 2024-11-26 05:06:45,913 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO 2024-11-26 05:06:45,914 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO 2024-11-26 05:06:45,915 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO 2024-11-26 05:06:45,917 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:45,918 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:45,919 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:45,920 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:45,922 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:45,923 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:45,924 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:45,925 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:45,926 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:45,927 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:45,929 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:45,930 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:45,931 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:45,932 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:45,933 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:45,934 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:45,935 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:45,937 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:45,938 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:45,939 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:45,940 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:45,942 root INFO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:45,943 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:45,944 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:45,946 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-11-26 05:06:45,947 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-11-26 05:06:45,948 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-11-26 05:06:45,949 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-11-26 05:06:45,950 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-11-26 05:06:45,952 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-11-26 05:06:45,953 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-11-26 05:06:45,954 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-riscv64-cpython-312/Bio/SeqUtils 2024-11-26 05:06:45,956 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Sequencing 2024-11-26 05:06:45,957 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing 2024-11-26 05:06:45,958 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing 2024-11-26 05:06:45,959 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing 2024-11-26 05:06:45,961 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2024-11-26 05:06:45,961 root INFO copying Bio/Sequencing/Applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2024-11-26 05:06:45,962 root INFO copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2024-11-26 05:06:45,966 root INFO copying Bio/Sequencing/Applications/_samtools.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2024-11-26 05:06:45,967 root INFO copying Bio/Sequencing/Applications/_bwa.py -> build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications 2024-11-26 05:06:45,969 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SVDSuperimposer 2024-11-26 05:06:45,971 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SVDSuperimposer 2024-11-26 05:06:45,972 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/SwissProt 2024-11-26 05:06:45,973 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/SwissProt 2024-11-26 05:06:45,974 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-riscv64-cpython-312/Bio/SwissProt 2024-11-26 05:06:45,975 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/TogoWS 2024-11-26 05:06:45,976 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/TogoWS 2024-11-26 05:06:45,978 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-26 05:06:45,979 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-26 05:06:45,980 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-26 05:06:45,981 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-26 05:06:45,982 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-26 05:06:45,983 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-26 05:06:45,985 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-26 05:06:45,986 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-26 05:06:45,987 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-26 05:06:45,989 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-26 05:06:45,990 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-26 05:06:45,991 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-26 05:06:45,992 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-26 05:06:45,993 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-26 05:06:45,994 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-26 05:06:45,995 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-26 05:06:45,996 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo 2024-11-26 05:06:45,998 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2024-11-26 05:06:45,999 root INFO copying Bio/Phylo/Applications/_Raxml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2024-11-26 05:06:46,000 root INFO copying Bio/Phylo/Applications/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2024-11-26 05:06:46,001 root INFO copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2024-11-26 05:06:46,002 root INFO copying Bio/Phylo/Applications/_Phyml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications 2024-11-26 05:06:46,004 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-11-26 05:06:46,005 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-11-26 05:06:46,006 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-11-26 05:06:46,007 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-11-26 05:06:46,008 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-11-26 05:06:46,009 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-11-26 05:06:46,010 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-11-26 05:06:46,011 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-11-26 05:06:46,012 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-11-26 05:06:46,013 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML 2024-11-26 05:06:46,015 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/UniGene 2024-11-26 05:06:46,016 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/UniGene 2024-11-26 05:06:46,017 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/UniProt 2024-11-26 05:06:46,018 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-riscv64-cpython-312/Bio/UniProt 2024-11-26 05:06:46,019 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-riscv64-cpython-312/Bio/UniProt 2024-11-26 05:06:46,020 root INFO creating build/lib.linux-riscv64-cpython-312/BioSQL 2024-11-26 05:06:46,021 root INFO copying BioSQL/__init__.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2024-11-26 05:06:46,022 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2024-11-26 05:06:46,023 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2024-11-26 05:06:46,024 root INFO copying BioSQL/Loader.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2024-11-26 05:06:46,026 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-riscv64-cpython-312/BioSQL 2024-11-26 05:06:46,027 root INFO running egg_info 2024-11-26 05:06:46,034 root INFO writing biopython.egg-info/PKG-INFO 2024-11-26 05:06:46,036 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt 2024-11-26 05:06:46,038 root INFO writing requirements to biopython.egg-info/requires.txt 2024-11-26 05:06:46,038 root INFO writing top-level names to biopython.egg-info/top_level.txt 2024-11-26 05:06:46,092 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt' 2024-11-26 05:06:46,154 root INFO reading manifest template 'MANIFEST.in' 2024-11-26 05:06:46,497 root WARNING warning: no previously-included files found matching 'Doc/_build/' 2024-11-26 05:06:46,515 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' 2024-11-26 05:06:46,524 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution 2024-11-26 05:06:46,533 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution 2024-11-26 05:06:46,542 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution 2024-11-26 05:06:46,551 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution 2024-11-26 05:06:46,574 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' 2024-11-26 05:06:46,575 root INFO adding license file 'LICENSE' 2024-11-26 05:06:46,575 root INFO adding license file 'LICENSE.rst' 2024-11-26 05:06:46,701 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.DTDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.DTDs' to be distributed and are already explicitly excluding 'Bio.Entrez.DTDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.XSDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.XSDs' to be distributed and are already explicitly excluding 'Bio.Entrez.XSDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) 2024-11-26 05:06:46,814 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-26 05:06:46,816 root INFO copying Bio/py.typed -> build/lib.linux-riscv64-cpython-312/Bio 2024-11-26 05:06:46,817 root INFO copying Bio/Align/_aligncore.c -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:46,818 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:46,819 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:46,822 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,823 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,824 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,825 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,826 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,827 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,828 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,829 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,830 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,831 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,832 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,833 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,834 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,835 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,837 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,838 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,839 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,840 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,841 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,842 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,843 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,844 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,845 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,846 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,847 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,848 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,849 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,850 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,851 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,853 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,854 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data 2024-11-26 05:06:46,855 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-riscv64-cpython-312/Bio/Cluster 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build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,122 root INFO copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,123 root INFO copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,124 root INFO copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,125 root INFO copying Bio/Entrez/DTDs/isonum.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,126 root INFO copying Bio/Entrez/DTDs/isopub.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,127 root INFO copying Bio/Entrez/DTDs/isotech.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,129 root INFO copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,130 root INFO copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,131 root INFO copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,133 root INFO copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,134 root INFO copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,135 root INFO copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,136 root INFO copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,138 root INFO copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,139 root INFO copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,140 root INFO copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,141 root INFO copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,143 root INFO copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,144 root INFO copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,145 root INFO copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,147 root INFO copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,148 root INFO copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,149 root INFO copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,150 root INFO copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,152 root INFO copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,153 root INFO copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,154 root INFO copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,155 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,156 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,157 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,158 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,160 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,161 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,162 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,163 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,164 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,165 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,166 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,168 root INFO copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,169 root INFO copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,170 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,171 root INFO copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,172 root INFO copying Bio/Entrez/DTDs/notat.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,173 root INFO copying Bio/Entrez/DTDs/para.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,175 root INFO copying Bio/Entrez/DTDs/phrase.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,176 root INFO copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,177 root INFO copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,178 root INFO copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,179 root INFO copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,180 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,181 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,182 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,183 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,185 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,186 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,187 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,188 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,189 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,190 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,192 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,193 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,194 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,195 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,196 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,198 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,199 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs 2024-11-26 05:06:47,200 root INFO creating build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs 2024-11-26 05:06:47,201 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs 2024-11-26 05:06:47,202 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs 2024-11-26 05:06:47,203 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs 2024-11-26 05:06:47,204 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-riscv64-cpython-312/Bio/motifs 2024-11-26 05:06:47,205 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-riscv64-cpython-312/Bio/Nexus 2024-11-26 05:06:47,206 root INFO copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:47,207 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:47,209 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:06:47,210 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:06:47,211 root INFO copying BioSQL/py.typed -> build/lib.linux-riscv64-cpython-312/BioSQL 2024-11-26 05:06:47,239 root INFO running build_ext 2024-11-26 05:06:47,246 root INFO building 'Bio.Align._codonaligner' extension 2024-11-26 05:06:47,246 root INFO creating build/temp.linux-riscv64-cpython-312 2024-11-26 05:06:47,247 root INFO creating build/temp.linux-riscv64-cpython-312/Bio 2024-11-26 05:06:47,247 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/Align 2024-11-26 05:06:47,248 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_codonaligner.c -o build/temp.linux-riscv64-cpython-312/Bio/Align/_codonaligner.o 2024-11-26 05:06:50,015 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Align/_codonaligner.cpython-312-riscv64-linux-musl.so 2024-11-26 05:06:50,062 root INFO building 'Bio.Align._pairwisealigner' extension 2024-11-26 05:06:50,063 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.o Bio/Align/_pairwisealigner.c: In function 'Aligner_watermansmithbeyer_global_align_compare': Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6319:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6319 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6308:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6308 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5737:16: warning: 'Iy_row' may be used uninitialized [-Wmaybe-uninitialized] 5737 | if (Iy_row) { \ | ^ Bio/Align/_pairwisealigner.c:6319:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6319 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5406:14: note: 'Iy_row' was declared here 5406 | double** Iy_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6308:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6308 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_watermansmithbeyer_local_align_compare': Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6367:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6367 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6356:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6356 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5737:16: warning: 'Iy_row' may be used uninitialized [-Wmaybe-uninitialized] 5737 | if (Iy_row) { \ | ^ Bio/Align/_pairwisealigner.c:6367:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6367 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5406:14: note: 'Iy_row' was declared here 5406 | double** Iy_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6356:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6356 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_global_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6874:34: Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6341:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6341 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6330:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6330 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_global_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6874:34: Bio/Align/_pairwisealigner.c:5737:16: warning: 'Iy_row' may be used uninitialized [-Wmaybe-uninitialized] 5737 | if (Iy_row) { \ | ^ Bio/Align/_pairwisealigner.c:6341:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6341 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5406:14: note: 'Iy_row' was declared here 5406 | double** Iy_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6330:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6330 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_local_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6880:34: Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6392:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6392 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6381:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6381 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_local_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6880:34: Bio/Align/_pairwisealigner.c:5737:16: warning: 'Iy_row' may be used uninitialized [-Wmaybe-uninitialized] 5737 | if (Iy_row) { \ | ^ Bio/Align/_pairwisealigner.c:6392:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6392 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5406:14: note: 'Iy_row' was declared here 5406 | double** Iy_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6381:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6381 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-26 05:07:23,956 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-riscv64-linux-musl.so 2024-11-26 05:07:24,170 root INFO building 'Bio.Align._aligncore' extension 2024-11-26 05:07:24,171 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Align/_aligncore.c -o build/temp.linux-riscv64-cpython-312/Bio/Align/_aligncore.o 2024-11-26 05:07:25,366 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Align/_aligncore.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Align/_aligncore.cpython-312-riscv64-linux-musl.so 2024-11-26 05:07:25,407 root INFO building 'Bio.cpairwise2' extension 2024-11-26 05:07:25,407 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.linux-riscv64-cpython-312/Bio/cpairwise2module.o Bio/cpairwise2module.c: In function '_get_match_score': Bio/cpairwise2module.c:60:5: warning: 'PyEval_CallObjectWithKeywords' is deprecated [-Wdeprecated-declarations] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist))) | ^~ In file included from /usr/include/python3.12/Python.h:95, from Bio/cpairwise2module.c:16: /usr/include/python3.12/ceval.h:27:43: note: declared here 27 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2024-11-26 05:07:27,015 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/cpairwise2.cpython-312-riscv64-linux-musl.so 2024-11-26 05:07:27,058 root INFO building 'Bio.Nexus.cnexus' extension 2024-11-26 05:07:27,059 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/Nexus 2024-11-26 05:07:27,060 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.linux-riscv64-cpython-312/Bio/Nexus/cnexus.o 2024-11-26 05:07:27,723 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Nexus/cnexus.cpython-312-riscv64-linux-musl.so 2024-11-26 05:07:27,763 root INFO building 'Bio.motifs._pwm' extension 2024-11-26 05:07:27,763 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/motifs 2024-11-26 05:07:27,764 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.linux-riscv64-cpython-312/Bio/motifs/_pwm.o 2024-11-26 05:07:28,599 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/motifs/_pwm.cpython-312-riscv64-linux-musl.so 2024-11-26 05:07:28,639 root INFO building 'Bio.Cluster._cluster' extension 2024-11-26 05:07:28,639 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/Cluster 2024-11-26 05:07:28,640 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.linux-riscv64-cpython-312/Bio/Cluster/cluster.o 2024-11-26 05:07:41,185 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.linux-riscv64-cpython-312/Bio/Cluster/clustermodule.o 2024-11-26 05:07:44,637 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/Cluster/cluster.o build/temp.linux-riscv64-cpython-312/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/Cluster/_cluster.cpython-312-riscv64-linux-musl.so 2024-11-26 05:07:44,730 root INFO building 'Bio.PDB.ccealign' extension 2024-11-26 05:07:44,730 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/PDB 2024-11-26 05:07:44,731 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-riscv64-cpython-312/Bio/PDB/ccealignmodule.o 2024-11-26 05:07:46,222 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/PDB/ccealign.cpython-312-riscv64-linux-musl.so 2024-11-26 05:07:46,263 root INFO building 'Bio.PDB.kdtrees' extension 2024-11-26 05:07:46,263 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.linux-riscv64-cpython-312/Bio/PDB/kdtrees.o 2024-11-26 05:07:48,485 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/PDB/kdtrees.cpython-312-riscv64-linux-musl.so 2024-11-26 05:07:48,531 root INFO building 'Bio.PDB._bcif_helper' extension 2024-11-26 05:07:48,532 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-riscv64-cpython-312/Bio/PDB/bcifhelpermodule.o 2024-11-26 05:07:49,317 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/PDB/bcifhelpermodule.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/PDB/_bcif_helper.cpython-312-riscv64-linux-musl.so 2024-11-26 05:07:49,357 root INFO building 'Bio.SeqIO._twoBitIO' extension 2024-11-26 05:07:49,357 root INFO creating build/temp.linux-riscv64-cpython-312/Bio/SeqIO 2024-11-26 05:07:49,358 root INFO gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O3 -Wall -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.o 2024-11-26 05:07:50,301 root INFO gcc -shared -Wl,--as-needed,-O1,--sort-common -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-riscv64-linux-musl.so 2024-11-26 05:07:50,363 root INFO installing to build/bdist.linux-riscv64/wheel 2024-11-26 05:07:50,363 root INFO running install 2024-11-26 05:07:50,409 root INFO running install_lib 2024-11-26 05:07:50,420 root INFO creating build/bdist.linux-riscv64 2024-11-26 05:07:50,420 root INFO creating build/bdist.linux-riscv64/wheel 2024-11-26 05:07:50,421 root INFO creating build/bdist.linux-riscv64/wheel/BioSQL 2024-11-26 05:07:50,421 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/__init__.py -> build/bdist.linux-riscv64/wheel/BioSQL 2024-11-26 05:07:50,422 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/DBUtils.py -> build/bdist.linux-riscv64/wheel/BioSQL 2024-11-26 05:07:50,424 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/BioSeq.py -> build/bdist.linux-riscv64/wheel/BioSQL 2024-11-26 05:07:50,425 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/py.typed -> build/bdist.linux-riscv64/wheel/BioSQL 2024-11-26 05:07:50,426 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/Loader.py -> build/bdist.linux-riscv64/wheel/BioSQL 2024-11-26 05:07:50,427 root INFO copying build/lib.linux-riscv64-cpython-312/BioSQL/BioSeqDatabase.py -> build/bdist.linux-riscv64/wheel/BioSQL 2024-11-26 05:07:50,429 root INFO creating build/bdist.linux-riscv64/wheel/Bio 2024-11-26 05:07:50,429 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/kNN.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-26 05:07:50,430 root INFO creating build/bdist.linux-riscv64/wheel/Bio/CAPS 2024-11-26 05:07:50,431 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/CAPS/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/CAPS 2024-11-26 05:07:50,432 root INFO creating build/bdist.linux-riscv64/wheel/Bio/GenBank 2024-11-26 05:07:50,433 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/GenBank 2024-11-26 05:07:50,434 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/Scanner.py -> build/bdist.linux-riscv64/wheel/Bio/GenBank 2024-11-26 05:07:50,436 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/utils.py -> build/bdist.linux-riscv64/wheel/Bio/GenBank 2024-11-26 05:07:50,437 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/GenBank/Record.py -> build/bdist.linux-riscv64/wheel/Bio/GenBank 2024-11-26 05:07:50,438 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-11-26 05:07:50,439 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-11-26 05:07:50,440 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/Nodes.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-11-26 05:07:50,441 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/cnexus.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-11-26 05:07:50,443 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/Nexus.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-11-26 05:07:50,444 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/Trees.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-11-26 05:07:50,446 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/cnexus.c -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-11-26 05:07:50,447 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Nexus/StandardData.py -> build/bdist.linux-riscv64/wheel/Bio/Nexus 2024-11-26 05:07:50,448 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/__init__.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-26 05:07:50,449 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Alphabet 2024-11-26 05:07:50,450 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Alphabet/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Alphabet 2024-11-26 05:07:50,451 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/MarkovModel.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-26 05:07:50,452 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Data 2024-11-26 05:07:50,453 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Data 2024-11-26 05:07:50,454 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/PDBData.py -> build/bdist.linux-riscv64/wheel/Bio/Data 2024-11-26 05:07:50,455 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/IUPACData.py -> build/bdist.linux-riscv64/wheel/Bio/Data 2024-11-26 05:07:50,456 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Data/CodonTable.py -> build/bdist.linux-riscv64/wheel/Bio/Data 2024-11-26 05:07:50,458 root INFO creating build/bdist.linux-riscv64/wheel/Bio/UniGene 2024-11-26 05:07:50,459 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/UniGene/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/UniGene 2024-11-26 05:07:50,460 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqRecord.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-26 05:07:50,461 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/pairwise2.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-26 05:07:50,463 root INFO creating build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-11-26 05:07:50,464 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-11-26 05:07:50,465 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/Prodoc.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-11-26 05:07:50,466 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/Prosite.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-11-26 05:07:50,467 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-11-26 05:07:50,468 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-11-26 05:07:50,469 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/ExPASy/Enzyme.py -> build/bdist.linux-riscv64/wheel/Bio/ExPASy 2024-11-26 05:07:50,470 root INFO creating build/bdist.linux-riscv64/wheel/Bio/phenotype 2024-11-26 05:07:50,471 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/phenotype/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/phenotype 2024-11-26 05:07:50,472 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/phenotype/pm_fitting.py -> build/bdist.linux-riscv64/wheel/Bio/phenotype 2024-11-26 05:07:50,473 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/phenotype/phen_micro.py -> build/bdist.linux-riscv64/wheel/Bio/phenotype 2024-11-26 05:07:50,475 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-26 05:07:50,475 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-26 05:07:50,476 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/BaseTree.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-26 05:07:50,478 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/CDAOIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-26 05:07:50,479 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-26 05:07:50,480 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-26 05:07:50,483 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications 2024-11-26 05:07:50,483 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications/_Raxml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications 2024-11-26 05:07:50,484 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications 2024-11-26 05:07:50,485 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications/_Fasttree.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications 2024-11-26 05:07:50,487 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Applications/_Phyml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/Applications 2024-11-26 05:07:50,488 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Consensus.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-26 05:07:50,489 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/Newick.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-26 05:07:50,490 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/_utils.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-26 05:07:50,492 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-26 05:07:50,493 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/_io.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-26 05:07:50,494 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PhyloXML.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-26 05:07:50,495 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-26 05:07:50,497 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/CDAO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-26 05:07:50,498 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NeXML.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-26 05:07:50,499 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NexusIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-26 05:07:50,500 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/NewickIO.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo 2024-11-26 05:07:50,501 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-11-26 05:07:50,502 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-11-26 05:07:50,503 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-11-26 05:07:50,504 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-11-26 05:07:50,505 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-11-26 05:07:50,506 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-11-26 05:07:50,507 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-11-26 05:07:50,509 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-11-26 05:07:50,510 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-11-26 05:07:50,511 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-riscv64/wheel/Bio/Phylo/PAML 2024-11-26 05:07:50,512 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/File.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-26 05:07:50,513 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NaiveBayes.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-26 05:07:50,515 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-11-26 05:07:50,515 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/KGML_vis.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-11-26 05:07:50,517 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-26 05:07:50,517 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-26 05:07:50,518 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-26 05:07:50,520 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-26 05:07:50,521 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-26 05:07:50,522 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-26 05:07:50,523 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-26 05:07:50,524 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-26 05:07:50,525 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-26 05:07:50,527 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-26 05:07:50,528 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-26 05:07:50,530 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-26 05:07:50,531 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics/GenomeDiagram 2024-11-26 05:07:50,532 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-11-26 05:07:50,533 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-11-26 05:07:50,535 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/Comparative.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-11-26 05:07:50,536 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-11-26 05:07:50,537 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/Distribution.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-11-26 05:07:50,538 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-riscv64/wheel/Bio/Graphics 2024-11-26 05:07:50,540 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/cpairwise2module.c -> build/bdist.linux-riscv64/wheel/Bio 2024-11-26 05:07:50,541 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-11-26 05:07:50,541 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-11-26 05:07:50,543 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Des.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-11-26 05:07:50,544 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Hie.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-11-26 05:07:50,545 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Cla.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-11-26 05:07:50,546 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Dom.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-11-26 05:07:50,547 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Residues.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-11-26 05:07:50,548 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SCOP/Raf.py -> build/bdist.linux-riscv64/wheel/Bio/SCOP 2024-11-26 05:07:50,549 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Application 2024-11-26 05:07:50,550 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Application/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Application 2024-11-26 05:07:50,551 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO 2024-11-26 05:07:50,552 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO 2024-11-26 05:07:50,553 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_index.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO 2024-11-26 05:07:50,555 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/InterproscanIO 2024-11-26 05:07:50,555 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/InterproscanIO 2024-11-26 05:07:50,556 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/InterproscanIO 2024-11-26 05:07:50,558 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-11-26 05:07:50,558 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-11-26 05:07:50,560 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-11-26 05:07:50,561 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-11-26 05:07:50,562 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-11-26 05:07:50,563 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-11-26 05:07:50,564 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HmmerIO 2024-11-26 05:07:50,566 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO 2024-11-26 05:07:50,566 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO 2024-11-26 05:07:50,568 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO 2024-11-26 05:07:50,569 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/BlastIO 2024-11-26 05:07:50,570 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2024-11-26 05:07:50,571 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2024-11-26 05:07:50,572 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2024-11-26 05:07:50,573 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2024-11-26 05:07:50,575 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2024-11-26 05:07:50,576 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/ExonerateIO 2024-11-26 05:07:50,577 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_utils.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO 2024-11-26 05:07:50,578 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO 2024-11-26 05:07:50,580 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/BlatIO.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO 2024-11-26 05:07:50,581 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/HHsuiteIO 2024-11-26 05:07:50,582 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HHsuiteIO 2024-11-26 05:07:50,583 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/HHsuiteIO 2024-11-26 05:07:50,584 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2024-11-26 05:07:50,585 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2024-11-26 05:07:50,586 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/hit.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2024-11-26 05:07:50,587 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/_base.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2024-11-26 05:07:50,588 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/query.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2024-11-26 05:07:50,589 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-riscv64/wheel/Bio/SearchIO/_model 2024-11-26 05:07:50,591 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Blast 2024-11-26 05:07:50,591 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Blast 2024-11-26 05:07:50,593 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/NCBIXML.py -> build/bdist.linux-riscv64/wheel/Bio/Blast 2024-11-26 05:07:50,594 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/Applications.py -> build/bdist.linux-riscv64/wheel/Bio/Blast 2024-11-26 05:07:50,596 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/_writers.py -> build/bdist.linux-riscv64/wheel/Bio/Blast 2024-11-26 05:07:50,597 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/_parser.py -> build/bdist.linux-riscv64/wheel/Bio/Blast 2024-11-26 05:07:50,598 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Blast/NCBIWWW.py -> build/bdist.linux-riscv64/wheel/Bio/Blast 2024-11-26 05:07:50,600 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/_utils.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-26 05:07:50,601 root INFO creating build/bdist.linux-riscv64/wheel/Bio/UniProt 2024-11-26 05:07:50,601 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/UniProt/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/UniProt 2024-11-26 05:07:50,602 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/UniProt/GOA.py -> build/bdist.linux-riscv64/wheel/Bio/UniProt 2024-11-26 05:07:50,604 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SwissProt 2024-11-26 05:07:50,604 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SwissProt/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SwissProt 2024-11-26 05:07:50,606 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SwissProt/KeyWList.py -> build/bdist.linux-riscv64/wheel/Bio/SwissProt 2024-11-26 05:07:50,607 root INFO creating build/bdist.linux-riscv64/wheel/Bio/codonalign 2024-11-26 05:07:50,608 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/codonalign/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/codonalign 2024-11-26 05:07:50,609 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/codonalign/codonalignment.py -> build/bdist.linux-riscv64/wheel/Bio/codonalign 2024-11-26 05:07:50,610 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/codonalign/codonseq.py -> build/bdist.linux-riscv64/wheel/Bio/codonalign 2024-11-26 05:07:50,612 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/py.typed -> build/bdist.linux-riscv64/wheel/Bio 2024-11-26 05:07:50,613 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Sequencing 2024-11-26 05:07:50,613 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing 2024-11-26 05:07:50,614 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Phd.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing 2024-11-26 05:07:50,616 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications 2024-11-26 05:07:50,616 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications 2024-11-26 05:07:50,617 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications/_Novoalign.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications 2024-11-26 05:07:50,618 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications/_samtools.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications 2024-11-26 05:07:50,620 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Applications/_bwa.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing/Applications 2024-11-26 05:07:50,621 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Sequencing/Ace.py -> build/bdist.linux-riscv64/wheel/Bio/Sequencing 2024-11-26 05:07:50,623 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,623 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,625 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,626 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_index.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,627 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,629 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,630 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/PhdIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,631 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,632 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/IgIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,633 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,635 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/Interfaces.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,636 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/TabIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,637 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,638 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,639 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SwissIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,641 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/NibIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,642 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/SffIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,643 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/AbiIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,644 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/PdbIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,646 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/AceIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,647 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/QualityIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,649 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/GckIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,650 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/GfaIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,651 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,652 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/PirIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,654 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-riscv64/wheel/Bio/SeqIO 2024-11-26 05:07:50,655 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG 2024-11-26 05:07:50,656 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Map 2024-11-26 05:07:50,657 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Map/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/Map 2024-11-26 05:07:50,658 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG 2024-11-26 05:07:50,659 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Compound 2024-11-26 05:07:50,659 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/Compound 2024-11-26 05:07:50,660 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/REST.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG 2024-11-26 05:07:50,662 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Gene 2024-11-26 05:07:50,663 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/Gene 2024-11-26 05:07:50,664 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML 2024-11-26 05:07:50,664 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML 2024-11-26 05:07:50,665 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML 2024-11-26 05:07:50,667 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/KGML 2024-11-26 05:07:50,668 root INFO creating build/bdist.linux-riscv64/wheel/Bio/KEGG/Enzyme 2024-11-26 05:07:50,669 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/KEGG/Enzyme 2024-11-26 05:07:50,670 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-11-26 05:07:50,671 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-11-26 05:07:50,672 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-11-26 05:07:50,673 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/lcc.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-11-26 05:07:50,674 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-11-26 05:07:50,675 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-11-26 05:07:50,677 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-11-26 05:07:50,678 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-riscv64/wheel/Bio/SeqUtils 2024-11-26 05:07:50,679 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Geo 2024-11-26 05:07:50,680 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Geo/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Geo 2024-11-26 05:07:50,681 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Geo/Record.py -> build/bdist.linux-riscv64/wheel/Bio/Geo 2024-11-26 05:07:50,682 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez 2024-11-26 05:07:50,683 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Entrez 2024-11-26 05:07:50,685 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,686 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,687 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,688 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,689 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,690 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,691 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eLink_090910.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,693 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,694 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,695 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isodia.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,696 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,698 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,700 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,701 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,702 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/epost.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,703 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,704 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,705 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eSpell.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,707 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/para.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,708 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/modules.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,709 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,710 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,711 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,713 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/GenBank_General.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,714 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,715 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isomscr.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,716 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_090101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,717 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,718 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,720 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,721 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_General.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,722 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,723 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,724 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,725 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,726 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,727 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,728 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,729 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,731 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,732 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,733 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,734 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,735 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,736 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,737 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mmlalias.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,739 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_110101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,740 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,741 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,742 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,743 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,745 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,746 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,747 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,748 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/xhtml-table-1.mod -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,749 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eSummary_041029.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,750 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,752 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,753 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,754 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,755 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,756 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,757 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,759 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/MMDB_Features.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,760 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,761 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,762 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,763 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,764 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,765 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,767 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/archivecustom-models.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,768 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,769 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,771 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,772 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,773 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,774 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,776 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,777 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,778 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,779 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,780 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,782 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,783 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,785 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,786 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,787 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:50,788 root INFO copying 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build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:51,024 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/isogrk4.ent -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:51,025 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:51,026 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/esummary-v1.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:51,027 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:51,028 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/eInfo_020511.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:51,029 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:51,031 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:51,032 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:51,033 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/DTDs 2024-11-26 05:07:51,034 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/Parser.py -> build/bdist.linux-riscv64/wheel/Bio/Entrez 2024-11-26 05:07:51,036 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Entrez/XSDs 2024-11-26 05:07:51,037 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/XSDs 2024-11-26 05:07:51,038 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/XSDs 2024-11-26 05:07:51,039 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-riscv64/wheel/Bio/Entrez/XSDs 2024-11-26 05:07:51,040 root INFO creating build/bdist.linux-riscv64/wheel/Bio/TogoWS 2024-11-26 05:07:51,041 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/TogoWS/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/TogoWS 2024-11-26 05:07:51,042 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,043 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Superimposer.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,044 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/binary_cif.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,045 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Selection.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,046 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,047 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,048 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PDB/mmtf 2024-11-26 05:07:51,049 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/PDB/mmtf 2024-11-26 05:07:51,050 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-riscv64/wheel/Bio/PDB/mmtf 2024-11-26 05:07:51,051 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-riscv64/wheel/Bio/PDB/mmtf 2024-11-26 05:07:51,053 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ccealign.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,054 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/SCADIO.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,055 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/alphafold_db.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,056 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PICIO.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,058 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,059 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ccealignmodule.c -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,060 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/internal_coords.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,062 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/NACCESS.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,064 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Residue.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,065 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/vectors.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,066 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/kdtrees.c -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,067 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,069 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/StructureAlignment.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,070 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/mmcifio.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,071 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Polypeptide.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,072 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/cealign.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,073 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/DSSP.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,074 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBMLParser.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,076 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Chain.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,077 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PSEA.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,078 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/qcprot.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,079 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ic_data.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,081 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Dice.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,082 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/StructureBuilder.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,083 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/kdtrees.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,085 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/SASA.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,086 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,087 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/FragmentMapper.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,088 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Model.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,089 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ic_rebuild.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,090 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Entity.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,091 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/NeighborSearch.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,092 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/MMCIFParser.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,094 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/HSExposure.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,095 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Atom.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,096 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBExceptions.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,098 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBIO.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,099 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBParser.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,100 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/PDBList.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,101 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/Structure.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,102 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/_bcif_helper.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,103 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PDB/ResidueDepth.py -> build/bdist.linux-riscv64/wheel/Bio/PDB 2024-11-26 05:07:51,105 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Seq.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-26 05:07:51,107 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Cluster 2024-11-26 05:07:51,107 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Cluster 2024-11-26 05:07:51,109 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/clustermodule.c -> build/bdist.linux-riscv64/wheel/Bio/Cluster 2024-11-26 05:07:51,111 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/cluster.c -> build/bdist.linux-riscv64/wheel/Bio/Cluster 2024-11-26 05:07:51,113 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/_cluster.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/Cluster 2024-11-26 05:07:51,116 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Cluster/cluster.h -> build/bdist.linux-riscv64/wheel/Bio/Cluster 2024-11-26 05:07:51,117 root INFO creating build/bdist.linux-riscv64/wheel/Bio/SVDSuperimposer 2024-11-26 05:07:51,118 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/SVDSuperimposer 2024-11-26 05:07:51,119 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Affy 2024-11-26 05:07:51,120 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Affy/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Affy 2024-11-26 05:07:51,121 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Affy/CelFile.py -> build/bdist.linux-riscv64/wheel/Bio/Affy 2024-11-26 05:07:51,123 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Pathway 2024-11-26 05:07:51,123 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Pathway 2024-11-26 05:07:51,125 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep 2024-11-26 05:07:51,125 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep 2024-11-26 05:07:51,126 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep 2024-11-26 05:07:51,127 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-riscv64/wheel/Bio/Pathway/Rep 2024-11-26 05:07:51,129 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/SeqFeature.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-26 05:07:51,131 root INFO creating build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-11-26 05:07:51,131 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-11-26 05:07:51,132 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/MauveIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-11-26 05:07:51,134 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-11-26 05:07:51,135 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-11-26 05:07:51,136 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/Interfaces.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-11-26 05:07:51,137 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-11-26 05:07:51,138 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/FastaIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-11-26 05:07:51,140 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/NexusIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-11-26 05:07:51,141 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/MafIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-11-26 05:07:51,142 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/MsfIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-11-26 05:07:51,143 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-riscv64/wheel/Bio/AlignIO 2024-11-26 05:07:51,144 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Medline 2024-11-26 05:07:51,145 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Medline/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Medline 2024-11-26 05:07:51,146 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/bgzf.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-26 05:07:51,148 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PopGen 2024-11-26 05:07:51,148 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen 2024-11-26 05:07:51,149 root INFO creating build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2024-11-26 05:07:51,150 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2024-11-26 05:07:51,151 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2024-11-26 05:07:51,152 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/EasyController.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2024-11-26 05:07:51,154 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/Controller.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2024-11-26 05:07:51,155 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-riscv64/wheel/Bio/PopGen/GenePop 2024-11-26 05:07:51,156 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Emboss 2024-11-26 05:07:51,157 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-riscv64/wheel/Bio/Emboss 2024-11-26 05:07:51,158 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Emboss/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Emboss 2024-11-26 05:07:51,159 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Emboss/Applications.py -> build/bdist.linux-riscv64/wheel/Bio/Emboss 2024-11-26 05:07:51,160 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Emboss/Primer3.py -> build/bdist.linux-riscv64/wheel/Bio/Emboss 2024-11-26 05:07:51,162 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-26 05:07:51,162 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/meme.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-26 05:07:51,164 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-26 05:07:51,165 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/pfm.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-26 05:07:51,166 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/matrix.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-26 05:07:51,168 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/transfac.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-26 05:07:51,169 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/alignace.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-26 05:07:51,170 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/_pwm.c -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-26 05:07:51,171 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/minimal.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-26 05:07:51,172 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/clusterbuster.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-26 05:07:51,173 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/mast.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-26 05:07:51,174 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/thresholds.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-26 05:07:51,176 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/xms.py -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-26 05:07:51,177 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/_pwm.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/motifs 2024-11-26 05:07:51,178 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs/applications 2024-11-26 05:07:51,179 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/applications/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/motifs/applications 2024-11-26 05:07:51,180 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/applications/_xxmotif.py -> build/bdist.linux-riscv64/wheel/Bio/motifs/applications 2024-11-26 05:07:51,181 root INFO creating build/bdist.linux-riscv64/wheel/Bio/motifs/jaspar 2024-11-26 05:07:51,182 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar/db.py -> build/bdist.linux-riscv64/wheel/Bio/motifs/jaspar 2024-11-26 05:07:51,183 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/motifs/jaspar 2024-11-26 05:07:51,185 root INFO creating build/bdist.linux-riscv64/wheel/Bio/NMR 2024-11-26 05:07:51,185 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NMR/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/NMR 2024-11-26 05:07:51,186 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NMR/xpktools.py -> build/bdist.linux-riscv64/wheel/Bio/NMR 2024-11-26 05:07:51,187 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/NMR/NOEtools.py -> build/bdist.linux-riscv64/wheel/Bio/NMR 2024-11-26 05:07:51,188 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/MaxEntropy.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-26 05:07:51,190 root INFO creating build/bdist.linux-riscv64/wheel/Bio/HMM 2024-11-26 05:07:51,191 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/HMM 2024-11-26 05:07:51,192 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/MarkovModel.py -> build/bdist.linux-riscv64/wheel/Bio/HMM 2024-11-26 05:07:51,193 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/DynamicProgramming.py -> build/bdist.linux-riscv64/wheel/Bio/HMM 2024-11-26 05:07:51,194 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/Utilities.py -> build/bdist.linux-riscv64/wheel/Bio/HMM 2024-11-26 05:07:51,195 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/HMM/Trainer.py -> build/bdist.linux-riscv64/wheel/Bio/HMM 2024-11-26 05:07:51,196 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Compass 2024-11-26 05:07:51,197 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Compass/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Compass 2024-11-26 05:07:51,199 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,199 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.c -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,202 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,204 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/clustal.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,205 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/hhr.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,207 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bigmaf.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,208 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/exonerate.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,210 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices 2024-11-26 05:07:51,211 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices 2024-11-26 05:07:51,212 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,213 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,214 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,215 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,218 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,219 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,220 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,221 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,222 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,223 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,224 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,225 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,226 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,227 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,228 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,229 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,230 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,231 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,232 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,233 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,234 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,236 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,237 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,238 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,239 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,240 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,241 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,242 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,243 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,244 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,245 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-riscv64/wheel/Bio/Align/substitution_matrices/data 2024-11-26 05:07:51,246 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/AlignInfo.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,248 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/sam.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,249 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_codonaligner.c -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,250 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/stockholm.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,252 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_aligncore.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,253 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_codonaligner.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,255 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/tabular.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,256 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-11-26 05:07:51,257 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Dialign.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-11-26 05:07:51,258 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-11-26 05:07:51,259 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_ClustalOmega.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-11-26 05:07:51,260 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_TCoffee.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-11-26 05:07:51,262 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_MSAProbs.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-11-26 05:07:51,264 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Prank.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-11-26 05:07:51,265 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Muscle.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-11-26 05:07:51,266 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Probcons.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-11-26 05:07:51,268 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Clustalw.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-11-26 05:07:51,269 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/Applications/_Mafft.py -> build/bdist.linux-riscv64/wheel/Bio/Align/Applications 2024-11-26 05:07:51,270 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/a2m.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,271 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bigbed.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,273 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/nexus.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,274 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/analysis.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,276 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_aligncore.c -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,277 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bigpsl.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,278 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/mauve.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,280 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/psl.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,281 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/maf.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,282 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/bed.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,283 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/phylip.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,284 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/msf.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,286 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/chain.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,287 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/emboss.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,288 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/fasta.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,289 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/_pairwisealigner.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,293 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Align/interfaces.py -> build/bdist.linux-riscv64/wheel/Bio/Align 2024-11-26 05:07:51,295 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/cpairwise2.cpython-312-riscv64-linux-musl.so -> build/bdist.linux-riscv64/wheel/Bio 2024-11-26 05:07:51,296 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/LogisticRegression.py -> build/bdist.linux-riscv64/wheel/Bio 2024-11-26 05:07:51,298 root INFO creating build/bdist.linux-riscv64/wheel/Bio/Restriction 2024-11-26 05:07:51,299 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/__init__.py -> build/bdist.linux-riscv64/wheel/Bio/Restriction 2024-11-26 05:07:51,300 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/PrintFormat.py -> build/bdist.linux-riscv64/wheel/Bio/Restriction 2024-11-26 05:07:51,301 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/Restriction.py -> build/bdist.linux-riscv64/wheel/Bio/Restriction 2024-11-26 05:07:51,304 root INFO copying build/lib.linux-riscv64-cpython-312/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-riscv64/wheel/Bio/Restriction 2024-11-26 05:07:51,309 root INFO running install_egg_info 2024-11-26 05:07:51,319 root INFO Copying biopython.egg-info to build/bdist.linux-riscv64/wheel/biopython-1.84-py3.12.egg-info 2024-11-26 05:07:51,325 root INFO running install_scripts 2024-11-26 05:07:51,357 root INFO creating build/bdist.linux-riscv64/wheel/biopython-1.84.dist-info/WHEEL 2024-11-26 05:07:51,359 wheel INFO creating '/home/buildozer/aports/community/py3-biopython/src/biopython-1.84/.dist/.tmp-jceft7y1/biopython-1.84-cp312-cp312-linux_riscv64.whl' and adding 'build/bdist.linux-riscv64/wheel' to it 2024-11-26 05:07:51,361 wheel INFO adding 'Bio/File.py' 2024-11-26 05:07:51,363 wheel INFO adding 'Bio/LogisticRegression.py' 2024-11-26 05:07:51,364 wheel INFO adding 'Bio/MarkovModel.py' 2024-11-26 05:07:51,366 wheel INFO adding 'Bio/MaxEntropy.py' 2024-11-26 05:07:51,367 wheel INFO adding 'Bio/NaiveBayes.py' 2024-11-26 05:07:51,369 wheel INFO adding 'Bio/Seq.py' 2024-11-26 05:07:51,373 wheel INFO adding 'Bio/SeqFeature.py' 2024-11-26 05:07:51,376 wheel INFO adding 'Bio/SeqRecord.py' 2024-11-26 05:07:51,379 wheel INFO adding 'Bio/__init__.py' 2024-11-26 05:07:51,380 wheel INFO adding 'Bio/_utils.py' 2024-11-26 05:07:51,381 wheel INFO adding 'Bio/bgzf.py' 2024-11-26 05:07:51,383 wheel INFO adding 'Bio/cpairwise2.cpython-312-riscv64-linux-musl.so' 2024-11-26 05:07:51,385 wheel INFO adding 'Bio/cpairwise2module.c' 2024-11-26 05:07:51,386 wheel INFO adding 'Bio/kNN.py' 2024-11-26 05:07:51,388 wheel INFO adding 'Bio/pairwise2.py' 2024-11-26 05:07:51,390 wheel INFO adding 'Bio/py.typed' 2024-11-26 05:07:51,392 wheel INFO adding 'Bio/Affy/CelFile.py' 2024-11-26 05:07:51,394 wheel INFO adding 'Bio/Affy/__init__.py' 2024-11-26 05:07:51,395 wheel INFO adding 'Bio/Align/AlignInfo.py' 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'/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Phylo/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/Applications/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Phylo/PAML/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/GenomeDiagram/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Graphics/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SCOP/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Application/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Application/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/InterproscanIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HmmerIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/BlastIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/ExonerateIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/HHsuiteIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SearchIO/_model/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Blast/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Blast/__pycache__' 'usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/UniProt/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SwissProt/__pycache__' 'usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/codonalign/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Sequencing/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Sequencing/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Sequencing/Applications/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SeqIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Map/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/__pycache__' 'usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/KEGG/Compound/__pycache__' 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'usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Entrez/__pycache__' 'usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/TogoWS/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/mmtf/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PDB/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Cluster/__pycache__' 'usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/SVDSuperimposer/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Affy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Affy/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/Rep/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Pathway/__pycache__' 'usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/AlignIO/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Medline/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Medline/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/__pycache__' 'usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/PopGen/GenePop/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Emboss/__pycache__' 'usr/lib/python3.12/site-packages/Bio/motifs/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/__pycache__' 'usr/lib/python3.12/site-packages/Bio/motifs/applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/applications/__pycache__' 'usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/motifs/jaspar/__pycache__' 'usr/lib/python3.12/site-packages/Bio/NMR/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/NMR/__pycache__' 'usr/lib/python3.12/site-packages/Bio/HMM/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/HMM/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Compass/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Compass/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Align/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/substitution_matrices/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Align/Applications/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Align/Applications/__pycache__' 'usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.12/site-packages/Bio/Restriction/__pycache__' >>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc... >>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc >>> py3-biopython*: Running postcheck for py3-biopython >>> py3-biopython*: Preparing package py3-biopython... >>> py3-biopython*: Stripping binaries >>> py3-biopython-pyc*: Scanning shared objects >>> py3-biopython*: Scanning shared objects >>> py3-biopython-pyc*: Tracing dependencies... py3-numpy python3 python3~3.12 >>> py3-biopython-pyc*: Package size: 6.4 MB >>> py3-biopython-pyc*: Compressing data... >>> py3-biopython-pyc*: Create checksum... >>> py3-biopython-pyc*: Create py3-biopython-pyc-1.84-r0.apk >>> py3-biopython*: Tracing dependencies... py3-numpy python3 python3~3.12 so:libc.musl-riscv64.so.1 >>> py3-biopython*: Package size: 11.0 MB >>> py3-biopython*: Compressing data... >>> py3-biopython*: Create checksum... >>> py3-biopython*: Create py3-biopython-1.84-r0.apk >>> py3-biopython: Build complete at Tue, 26 Nov 2024 05:08:05 +0000 elapsed time 0h 1m 33s >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Uninstalling dependencies... (1/29) Purging .makedepends-py3-biopython (20241126.050635) (2/29) Purging py3-numpy-pyc (2.1.3-r0) (3/29) Purging py3-numpy (2.1.3-r0) (4/29) Purging openblas (0.3.28-r0) (5/29) Purging py3-gpep517-pyc (16-r0) (6/29) Purging py3-gpep517 (16-r0) (7/29) Purging py3-installer-pyc (0.7.0-r2) (8/29) Purging py3-installer (0.7.0-r2) (9/29) Purging py3-setuptools-pyc (70.3.0-r0) (10/29) Purging py3-setuptools (70.3.0-r0) (11/29) Purging py3-wheel-pyc (0.43.0-r0) (12/29) Purging py3-wheel (0.43.0-r0) (13/29) Purging py3-packaging-pyc (24.2-r0) (14/29) Purging py3-packaging (24.2-r0) (15/29) Purging py3-parsing-pyc (3.1.4-r0) (16/29) Purging py3-parsing (3.1.4-r0) (17/29) Purging py3-numpy-dev (2.1.3-r0) (18/29) Purging python3-dev (3.12.7-r1) (19/29) Purging python3-pyc (3.12.7-r1) (20/29) Purging python3-pycache-pyc0 (3.12.7-r1) (21/29) Purging pyc (3.12.7-r1) (22/29) Purging python3 (3.12.7-r1) (23/29) Purging gdbm (1.24-r0) (24/29) Purging libbz2 (1.0.8-r6) (25/29) Purging libffi (3.4.6-r0) (26/29) Purging libpanelw (6.5_p20241006-r3) (27/29) Purging mpdecimal (4.0.0-r0) (28/29) Purging sqlite-libs (3.47.0-r0) (29/29) Purging xz-libs (5.6.3-r0) Executing busybox-1.37.0-r8.trigger OK: 333 MiB in 98 packages >>> py3-biopython: Updating the community/riscv64 repository index... >>> py3-biopython: Signing the index...