>>> py3-biopython: Building community/py3-biopython 1.88-r0 (using abuild 3.18.0_rc7-r0) started Sat, 10 Oct 2026 03:37:23 +0000 >>> py3-biopython: Validating /home/buildozer/aports/community/py3-biopython/APKBUILD... >>> py3-biopython: Analyzing dependencies... >>> py3-biopython: Installing for build: build-base py3-numpy python3 py3-gpep517 py3-setuptools py3-wheel py3-numpy-dev python3-dev ( 1/31) Installing libbz2 (1.0.8-r6) ( 2/31) Installing libffi (3.8.0-r0) ( 3/31) Installing xz-libs (5.8.4-r0) ( 4/31) Installing mpdecimal (4.0.1-r0) ( 5/31) Installing libpanelw (6.6_p20260822-r0) ( 6/31) Installing readline (8.3.3-r1) ( 7/31) Installing sqlite-libs (3.53.4-r0) ( 8/31) Installing python3 (3.14.8-r0) ( 9/31) Installing python3-pycache-pyc0 (3.14.8-r0) (10/31) Installing pyc (3.14.8-r0) (11/31) Installing py3-numpy-pyc (2.5.3-r0) (12/31) Installing python3-pyc (3.14.8-r0) (13/31) Installing libgfortran (15.2.0-r9) (14/31) Installing openblas (0.3.30-r2) (15/31) Installing py3-numpy (2.5.3-r0) (16/31) Installing py3-numpy-tests (2.5.3-r0) (17/31) Installing py3-installer (1.0.1-r0) (18/31) Installing py3-installer-pyc (1.0.1-r0) (19/31) Installing py3-gpep517 (20-r0) (20/31) Installing py3-gpep517-pyc (20-r0) (21/31) Installing py3-parsing (3.3.3-r0) (22/31) Installing py3-parsing-pyc (3.3.3-r0) (23/31) Installing py3-packaging (26.2-r0) (24/31) Installing py3-packaging-pyc (26.2-r0) (25/31) Installing py3-setuptools (84.0.0-r0) (26/31) Installing py3-setuptools-pyc (84.0.0-r0) (27/31) Installing py3-wheel (0.48.0-r0) (28/31) Installing py3-wheel-pyc (0.48.0-r0) (29/31) Installing py3-numpy-dev (2.5.3-r0) (30/31) Installing python3-dev (3.14.8-r0) (31/31) Installing .makedepends-py3-biopython (20261010.033724) Executing busybox-1.38.0-r7.trigger OK: 649.5 MiB in 134 packages >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Cleaning up tmpdir >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.88.tar.gz Connecting to distfiles.alpinelinux.org (172.105.82.32:443) wget: server returned error: HTTP/1.1 404 Not Found >>> py3-biopython: Fetching https://files.pythonhosted.org/packages/source/b/biopython/biopython-1.88.tar.gz Connecting to files.pythonhosted.org (151.101.0.223:443) Connecting to files.pythonhosted.org (151.101.0.223:443) saving to '/var/cache/distfiles/biopython-1.88.tar.gz.part' biopython-1.88.tar.g 54% |***************** | 10.4M 0:00:00 ETA biopython-1.88.tar.g 100% |********************************| 18.9M 0:00:00 ETA '/var/cache/distfiles/biopython-1.88.tar.gz.part' saved /var/cache/distfiles/biopython-1.88.tar.gz: OK >>> py3-biopython: Fetching https://distfiles.alpinelinux.org/distfiles/edge/biopython-1.88.tar.gz /var/cache/distfiles/biopython-1.88.tar.gz: OK >>> py3-biopython: Unpacking /var/cache/distfiles/biopython-1.88.tar.gz... 2026-10-10 03:37:29,313 gpep517 INFO Building wheel via backend setuptools.build_meta /usr/lib/python3.14/site-packages/setuptools/config/pyprojecttoml.py:72: _ExperimentalConfiguration: `[tool.setuptools.ext-modules]` in `pyproject.toml` is still *experimental* and likely to change in future releases. config = read_configuration(filepath, True, ignore_option_errors, dist) 2026-10-10 03:37:29,381 root INFO running bdist_wheel 2026-10-10 03:37:29,396 root INFO running build 2026-10-10 03:37:29,397 root INFO running build_py 2026-10-10 03:37:29,400 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio 2026-10-10 03:37:29,401 root INFO copying Bio/pairwise2.py -> build/lib.linux-loongarch64-cpython-314/Bio 2026-10-10 03:37:29,401 root INFO copying Bio/SeqRecord.py -> build/lib.linux-loongarch64-cpython-314/Bio 2026-10-10 03:37:29,402 root INFO copying Bio/_utils.py -> build/lib.linux-loongarch64-cpython-314/Bio 2026-10-10 03:37:29,402 root INFO copying Bio/SeqFeature.py -> build/lib.linux-loongarch64-cpython-314/Bio 2026-10-10 03:37:29,403 root INFO copying Bio/File.py -> build/lib.linux-loongarch64-cpython-314/Bio 2026-10-10 03:37:29,403 root INFO copying Bio/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio 2026-10-10 03:37:29,404 root INFO copying Bio/Seq.py -> build/lib.linux-loongarch64-cpython-314/Bio 2026-10-10 03:37:29,404 root INFO copying Bio/bgzf.py -> build/lib.linux-loongarch64-cpython-314/Bio 2026-10-10 03:37:29,405 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/Affy 2026-10-10 03:37:29,405 root INFO copying Bio/Affy/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/Affy 2026-10-10 03:37:29,405 root INFO copying Bio/Affy/CelFile.py -> build/lib.linux-loongarch64-cpython-314/Bio/Affy 2026-10-10 03:37:29,406 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,406 root INFO copying Bio/Align/chain.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,407 root INFO copying Bio/Align/AlignInfo.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,407 root INFO copying Bio/Align/nexus.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,408 root INFO copying Bio/Align/interfaces.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,408 root INFO copying Bio/Align/exonerate.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,409 root INFO copying Bio/Align/bigmaf.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,409 root INFO copying Bio/Align/sam.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,409 root INFO copying Bio/Align/bed.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,410 root INFO copying Bio/Align/hhr.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,410 root INFO copying Bio/Align/phylip.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,411 root INFO copying Bio/Align/msf.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,411 root INFO copying Bio/Align/bigbed.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,412 root INFO copying Bio/Align/mauve.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,412 root INFO copying Bio/Align/emboss.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,412 root INFO copying Bio/Align/tabular.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,413 root INFO copying Bio/Align/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,413 root INFO copying Bio/Align/analysis.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,414 root INFO copying Bio/Align/psl.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,414 root INFO copying Bio/Align/bigpsl.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,415 root INFO copying Bio/Align/clustal.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,415 root INFO copying Bio/Align/a2m.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,416 root INFO copying Bio/Align/stockholm.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,416 root INFO copying Bio/Align/fasta.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,416 root INFO copying Bio/Align/maf.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,417 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices 2026-10-10 03:37:29,417 root INFO copying Bio/Align/substitution_matrices/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices 2026-10-10 03:37:29,418 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/AlignIO 2026-10-10 03:37:29,418 root INFO copying Bio/AlignIO/MsfIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/AlignIO 2026-10-10 03:37:29,419 root INFO copying Bio/AlignIO/EmbossIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/AlignIO 2026-10-10 03:37:29,419 root INFO copying Bio/AlignIO/StockholmIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/AlignIO 2026-10-10 03:37:29,420 root INFO copying Bio/AlignIO/ClustalIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/AlignIO 2026-10-10 03:37:29,420 root INFO copying Bio/AlignIO/MafIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/AlignIO 2026-10-10 03:37:29,420 root INFO copying Bio/AlignIO/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/AlignIO 2026-10-10 03:37:29,421 root INFO copying Bio/AlignIO/FastaIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/AlignIO 2026-10-10 03:37:29,421 root INFO copying Bio/AlignIO/PhylipIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/AlignIO 2026-10-10 03:37:29,422 root INFO copying Bio/AlignIO/MauveIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/AlignIO 2026-10-10 03:37:29,422 root INFO copying Bio/AlignIO/NexusIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/AlignIO 2026-10-10 03:37:29,422 root INFO copying Bio/AlignIO/Interfaces.py -> build/lib.linux-loongarch64-cpython-314/Bio/AlignIO 2026-10-10 03:37:29,423 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/Alphabet 2026-10-10 03:37:29,423 root INFO copying Bio/Alphabet/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/Alphabet 2026-10-10 03:37:29,424 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/Blast 2026-10-10 03:37:29,424 root INFO copying Bio/Blast/_writers.py -> build/lib.linux-loongarch64-cpython-314/Bio/Blast 2026-10-10 03:37:29,424 root INFO copying Bio/Blast/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/Blast 2026-10-10 03:37:29,425 root INFO copying Bio/Blast/NCBIWWW.py -> build/lib.linux-loongarch64-cpython-314/Bio/Blast 2026-10-10 03:37:29,425 root INFO copying Bio/Blast/NCBIXML.py -> build/lib.linux-loongarch64-cpython-314/Bio/Blast 2026-10-10 03:37:29,426 root INFO copying Bio/Blast/_parser.py -> build/lib.linux-loongarch64-cpython-314/Bio/Blast 2026-10-10 03:37:29,426 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/CAPS 2026-10-10 03:37:29,427 root INFO copying Bio/CAPS/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/CAPS 2026-10-10 03:37:29,427 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/Cluster 2026-10-10 03:37:29,427 root INFO copying Bio/Cluster/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/Cluster 2026-10-10 03:37:29,428 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/codonalign 2026-10-10 03:37:29,428 root INFO copying Bio/codonalign/codonseq.py -> build/lib.linux-loongarch64-cpython-314/Bio/codonalign 2026-10-10 03:37:29,429 root INFO copying Bio/codonalign/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/codonalign 2026-10-10 03:37:29,429 root INFO copying Bio/codonalign/codonalignment.py -> build/lib.linux-loongarch64-cpython-314/Bio/codonalign 2026-10-10 03:37:29,430 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/Compass 2026-10-10 03:37:29,430 root INFO copying Bio/Compass/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/Compass 2026-10-10 03:37:29,430 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/Data 2026-10-10 03:37:29,431 root INFO copying Bio/Data/IUPACData.py -> build/lib.linux-loongarch64-cpython-314/Bio/Data 2026-10-10 03:37:29,431 root INFO copying Bio/Data/PDBData.py -> build/lib.linux-loongarch64-cpython-314/Bio/Data 2026-10-10 03:37:29,431 root INFO copying Bio/Data/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/Data 2026-10-10 03:37:29,432 root INFO copying Bio/Data/CodonTable.py -> build/lib.linux-loongarch64-cpython-314/Bio/Data 2026-10-10 03:37:29,432 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/Emboss 2026-10-10 03:37:29,433 root INFO copying Bio/Emboss/PrimerSearch.py -> build/lib.linux-loongarch64-cpython-314/Bio/Emboss 2026-10-10 03:37:29,433 root INFO copying Bio/Emboss/Primer3.py -> build/lib.linux-loongarch64-cpython-314/Bio/Emboss 2026-10-10 03:37:29,433 root INFO copying Bio/Emboss/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/Emboss 2026-10-10 03:37:29,434 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/Entrez 2026-10-10 03:37:29,434 root INFO copying Bio/Entrez/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez 2026-10-10 03:37:29,435 root INFO copying Bio/Entrez/Parser.py -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez 2026-10-10 03:37:29,436 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/ExPASy 2026-10-10 03:37:29,436 root INFO copying Bio/ExPASy/ScanProsite.py -> build/lib.linux-loongarch64-cpython-314/Bio/ExPASy 2026-10-10 03:37:29,437 root INFO copying Bio/ExPASy/Prodoc.py -> build/lib.linux-loongarch64-cpython-314/Bio/ExPASy 2026-10-10 03:37:29,437 root INFO copying Bio/ExPASy/Prosite.py -> build/lib.linux-loongarch64-cpython-314/Bio/ExPASy 2026-10-10 03:37:29,438 root INFO copying Bio/ExPASy/Enzyme.py -> build/lib.linux-loongarch64-cpython-314/Bio/ExPASy 2026-10-10 03:37:29,438 root INFO copying Bio/ExPASy/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/ExPASy 2026-10-10 03:37:29,438 root INFO copying Bio/ExPASy/cellosaurus.py -> build/lib.linux-loongarch64-cpython-314/Bio/ExPASy 2026-10-10 03:37:29,439 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/GenBank 2026-10-10 03:37:29,439 root INFO copying Bio/GenBank/utils.py -> build/lib.linux-loongarch64-cpython-314/Bio/GenBank 2026-10-10 03:37:29,440 root INFO copying Bio/GenBank/Record.py -> build/lib.linux-loongarch64-cpython-314/Bio/GenBank 2026-10-10 03:37:29,440 root INFO copying Bio/GenBank/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/GenBank 2026-10-10 03:37:29,440 root INFO copying Bio/GenBank/Scanner.py -> build/lib.linux-loongarch64-cpython-314/Bio/GenBank 2026-10-10 03:37:29,441 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/Geo 2026-10-10 03:37:29,441 root INFO copying Bio/Geo/Record.py -> build/lib.linux-loongarch64-cpython-314/Bio/Geo 2026-10-10 03:37:29,442 root INFO copying Bio/Geo/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/Geo 2026-10-10 03:37:29,442 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/Graphics 2026-10-10 03:37:29,442 root INFO copying Bio/Graphics/Comparative.py -> build/lib.linux-loongarch64-cpython-314/Bio/Graphics 2026-10-10 03:37:29,443 root INFO copying Bio/Graphics/KGML_vis.py -> build/lib.linux-loongarch64-cpython-314/Bio/Graphics 2026-10-10 03:37:29,444 root INFO copying Bio/Graphics/BasicChromosome.py -> build/lib.linux-loongarch64-cpython-314/Bio/Graphics 2026-10-10 03:37:29,444 root INFO copying Bio/Graphics/DisplayRepresentation.py -> build/lib.linux-loongarch64-cpython-314/Bio/Graphics 2026-10-10 03:37:29,445 root INFO copying Bio/Graphics/ColorSpiral.py -> build/lib.linux-loongarch64-cpython-314/Bio/Graphics 2026-10-10 03:37:29,445 root INFO copying Bio/Graphics/Distribution.py -> build/lib.linux-loongarch64-cpython-314/Bio/Graphics 2026-10-10 03:37:29,445 root INFO copying Bio/Graphics/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/Graphics 2026-10-10 03:37:29,446 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram 2026-10-10 03:37:29,446 root INFO copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram 2026-10-10 03:37:29,447 root INFO copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram 2026-10-10 03:37:29,447 root INFO copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram 2026-10-10 03:37:29,448 root INFO copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram 2026-10-10 03:37:29,448 root INFO copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram 2026-10-10 03:37:29,449 root INFO copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram 2026-10-10 03:37:29,449 root INFO copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram 2026-10-10 03:37:29,449 root INFO copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram 2026-10-10 03:37:29,450 root INFO copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram 2026-10-10 03:37:29,450 root INFO copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram 2026-10-10 03:37:29,451 root INFO copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram 2026-10-10 03:37:29,451 root INFO copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram 2026-10-10 03:37:29,451 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/HMM 2026-10-10 03:37:29,452 root INFO copying Bio/HMM/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/HMM 2026-10-10 03:37:29,452 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/KEGG 2026-10-10 03:37:29,452 root INFO copying Bio/KEGG/REST.py -> build/lib.linux-loongarch64-cpython-314/Bio/KEGG 2026-10-10 03:37:29,453 root INFO copying Bio/KEGG/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/KEGG 2026-10-10 03:37:29,453 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/KEGG/Compound 2026-10-10 03:37:29,454 root INFO copying Bio/KEGG/Compound/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/KEGG/Compound 2026-10-10 03:37:29,454 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/KEGG/Enzyme 2026-10-10 03:37:29,454 root INFO copying Bio/KEGG/Enzyme/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/KEGG/Enzyme 2026-10-10 03:37:29,455 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/KEGG/Gene 2026-10-10 03:37:29,455 root INFO copying Bio/KEGG/Gene/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/KEGG/Gene 2026-10-10 03:37:29,456 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/KEGG/Map 2026-10-10 03:37:29,456 root INFO copying Bio/KEGG/Map/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/KEGG/Map 2026-10-10 03:37:29,456 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/KEGG/KGML 2026-10-10 03:37:29,457 root INFO copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.linux-loongarch64-cpython-314/Bio/KEGG/KGML 2026-10-10 03:37:29,457 root INFO copying Bio/KEGG/KGML/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/KEGG/KGML 2026-10-10 03:37:29,457 root INFO copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.linux-loongarch64-cpython-314/Bio/KEGG/KGML 2026-10-10 03:37:29,458 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/Medline 2026-10-10 03:37:29,458 root INFO copying Bio/Medline/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/Medline 2026-10-10 03:37:29,459 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/motifs 2026-10-10 03:37:29,459 root INFO copying Bio/motifs/thresholds.py -> build/lib.linux-loongarch64-cpython-314/Bio/motifs 2026-10-10 03:37:29,459 root INFO copying Bio/motifs/clusterbuster.py -> build/lib.linux-loongarch64-cpython-314/Bio/motifs 2026-10-10 03:37:29,460 root INFO copying Bio/motifs/matrix.py -> build/lib.linux-loongarch64-cpython-314/Bio/motifs 2026-10-10 03:37:29,460 root INFO copying Bio/motifs/meme.py -> build/lib.linux-loongarch64-cpython-314/Bio/motifs 2026-10-10 03:37:29,461 root INFO copying Bio/motifs/mast.py -> build/lib.linux-loongarch64-cpython-314/Bio/motifs 2026-10-10 03:37:29,461 root INFO copying Bio/motifs/minimal.py -> build/lib.linux-loongarch64-cpython-314/Bio/motifs 2026-10-10 03:37:29,461 root INFO copying Bio/motifs/pfm.py -> build/lib.linux-loongarch64-cpython-314/Bio/motifs 2026-10-10 03:37:29,462 root INFO copying Bio/motifs/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/motifs 2026-10-10 03:37:29,462 root INFO copying Bio/motifs/xms.py -> build/lib.linux-loongarch64-cpython-314/Bio/motifs 2026-10-10 03:37:29,463 root INFO copying Bio/motifs/alignace.py -> build/lib.linux-loongarch64-cpython-314/Bio/motifs 2026-10-10 03:37:29,463 root INFO copying Bio/motifs/transfac.py -> build/lib.linux-loongarch64-cpython-314/Bio/motifs 2026-10-10 03:37:29,464 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/motifs/jaspar 2026-10-10 03:37:29,464 root INFO copying Bio/motifs/jaspar/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/motifs/jaspar 2026-10-10 03:37:29,464 root INFO copying Bio/motifs/jaspar/db.py -> build/lib.linux-loongarch64-cpython-314/Bio/motifs/jaspar 2026-10-10 03:37:29,465 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/Nexus 2026-10-10 03:37:29,465 root INFO copying Bio/Nexus/Trees.py -> build/lib.linux-loongarch64-cpython-314/Bio/Nexus 2026-10-10 03:37:29,465 root INFO copying Bio/Nexus/Nodes.py -> build/lib.linux-loongarch64-cpython-314/Bio/Nexus 2026-10-10 03:37:29,466 root INFO copying Bio/Nexus/StandardData.py -> build/lib.linux-loongarch64-cpython-314/Bio/Nexus 2026-10-10 03:37:29,466 root INFO copying Bio/Nexus/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/Nexus 2026-10-10 03:37:29,467 root INFO copying Bio/Nexus/Nexus.py -> build/lib.linux-loongarch64-cpython-314/Bio/Nexus 2026-10-10 03:37:29,467 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/NMR 2026-10-10 03:37:29,468 root INFO copying Bio/NMR/xpktools.py -> build/lib.linux-loongarch64-cpython-314/Bio/NMR 2026-10-10 03:37:29,468 root INFO copying Bio/NMR/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/NMR 2026-10-10 03:37:29,468 root INFO copying Bio/NMR/NOEtools.py -> build/lib.linux-loongarch64-cpython-314/Bio/NMR 2026-10-10 03:37:29,469 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/Pathway 2026-10-10 03:37:29,469 root INFO copying Bio/Pathway/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/Pathway 2026-10-10 03:37:29,470 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/Pathway/Rep 2026-10-10 03:37:29,470 root INFO copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.linux-loongarch64-cpython-314/Bio/Pathway/Rep 2026-10-10 03:37:29,470 root INFO copying Bio/Pathway/Rep/Graph.py -> build/lib.linux-loongarch64-cpython-314/Bio/Pathway/Rep 2026-10-10 03:37:29,471 root INFO copying Bio/Pathway/Rep/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/Pathway/Rep 2026-10-10 03:37:29,472 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,472 root INFO copying Bio/PDB/Chain.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,472 root INFO copying Bio/PDB/parse_pdb_header.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,473 root INFO copying Bio/PDB/Structure.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,473 root INFO copying Bio/PDB/NACCESS.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,473 root INFO copying Bio/PDB/MMCIFParser.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,474 root INFO copying Bio/PDB/internal_coords.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,474 root INFO copying Bio/PDB/StructureAlignment.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,475 root INFO copying Bio/PDB/Polypeptide.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,475 root INFO copying Bio/PDB/StructureBuilder.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,476 root INFO copying Bio/PDB/Selection.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,476 root INFO copying Bio/PDB/PICIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,477 root INFO copying Bio/PDB/PDBMLParser.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,477 root INFO copying Bio/PDB/Dice.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,477 root INFO copying Bio/PDB/ic_rebuild.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,478 root INFO copying Bio/PDB/AbstractPropertyMap.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,478 root INFO copying Bio/PDB/cealign.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,479 root INFO copying Bio/PDB/DSSP.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,479 root INFO copying Bio/PDB/alphafold_db.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,479 root INFO copying Bio/PDB/HSExposure.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,480 root INFO copying Bio/PDB/PDBIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,480 root INFO copying Bio/PDB/Residue.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,481 root INFO copying Bio/PDB/ic_data.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,481 root INFO copying Bio/PDB/PSEA.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,482 root INFO copying Bio/PDB/FragmentMapper.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,482 root INFO copying Bio/PDB/vectors.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,482 root INFO copying Bio/PDB/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,483 root INFO copying Bio/PDB/MMCIF2Dict.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,483 root INFO copying Bio/PDB/mmcifio.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,484 root INFO copying Bio/PDB/binary_cif.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,484 root INFO copying Bio/PDB/NeighborSearch.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,484 root INFO copying Bio/PDB/Atom.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,485 root INFO copying Bio/PDB/ResidueDepth.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,485 root INFO copying Bio/PDB/PDBList.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,486 root INFO copying Bio/PDB/Model.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,486 root INFO copying Bio/PDB/Entity.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,487 root INFO copying Bio/PDB/PDBParser.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,487 root INFO copying Bio/PDB/Superimposer.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,487 root INFO copying Bio/PDB/qcprot.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,488 root INFO copying Bio/PDB/SCADIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,488 root INFO copying Bio/PDB/SASA.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,489 root INFO copying Bio/PDB/PDBExceptions.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:29,489 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/PDB/mmtf 2026-10-10 03:37:29,489 root INFO copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB/mmtf 2026-10-10 03:37:29,490 root INFO copying Bio/PDB/mmtf/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB/mmtf 2026-10-10 03:37:29,490 root INFO copying Bio/PDB/mmtf/mmtfio.py -> build/lib.linux-loongarch64-cpython-314/Bio/PDB/mmtf 2026-10-10 03:37:29,491 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/phenotype 2026-10-10 03:37:29,491 root INFO copying Bio/phenotype/phen_micro.py -> build/lib.linux-loongarch64-cpython-314/Bio/phenotype 2026-10-10 03:37:29,491 root INFO copying Bio/phenotype/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/phenotype 2026-10-10 03:37:29,492 root INFO copying Bio/phenotype/pm_fitting.py -> build/lib.linux-loongarch64-cpython-314/Bio/phenotype 2026-10-10 03:37:29,492 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/PopGen 2026-10-10 03:37:29,493 root INFO copying Bio/PopGen/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/PopGen 2026-10-10 03:37:29,493 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/PopGen/GenePop 2026-10-10 03:37:29,493 root INFO copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.linux-loongarch64-cpython-314/Bio/PopGen/GenePop 2026-10-10 03:37:29,494 root INFO copying Bio/PopGen/GenePop/FileParser.py -> build/lib.linux-loongarch64-cpython-314/Bio/PopGen/GenePop 2026-10-10 03:37:29,494 root INFO copying Bio/PopGen/GenePop/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/PopGen/GenePop 2026-10-10 03:37:29,495 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/Restriction 2026-10-10 03:37:29,495 root INFO copying Bio/Restriction/PrintFormat.py -> build/lib.linux-loongarch64-cpython-314/Bio/Restriction 2026-10-10 03:37:29,495 root INFO copying Bio/Restriction/Restriction.py -> build/lib.linux-loongarch64-cpython-314/Bio/Restriction 2026-10-10 03:37:29,496 root INFO copying Bio/Restriction/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/Restriction 2026-10-10 03:37:29,496 root INFO copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.linux-loongarch64-cpython-314/Bio/Restriction 2026-10-10 03:37:29,497 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/SCOP 2026-10-10 03:37:29,498 root INFO copying Bio/SCOP/Hie.py -> build/lib.linux-loongarch64-cpython-314/Bio/SCOP 2026-10-10 03:37:29,498 root INFO copying Bio/SCOP/Raf.py -> build/lib.linux-loongarch64-cpython-314/Bio/SCOP 2026-10-10 03:37:29,498 root INFO copying Bio/SCOP/Dom.py -> build/lib.linux-loongarch64-cpython-314/Bio/SCOP 2026-10-10 03:37:29,499 root INFO copying Bio/SCOP/Cla.py -> build/lib.linux-loongarch64-cpython-314/Bio/SCOP 2026-10-10 03:37:29,499 root INFO copying Bio/SCOP/Des.py -> build/lib.linux-loongarch64-cpython-314/Bio/SCOP 2026-10-10 03:37:29,500 root INFO copying Bio/SCOP/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/SCOP 2026-10-10 03:37:29,500 root INFO copying Bio/SCOP/Residues.py -> build/lib.linux-loongarch64-cpython-314/Bio/SCOP 2026-10-10 03:37:29,501 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/SearchIO 2026-10-10 03:37:29,501 root INFO copying Bio/SearchIO/_utils.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO 2026-10-10 03:37:29,501 root INFO copying Bio/SearchIO/_index.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO 2026-10-10 03:37:29,502 root INFO copying Bio/SearchIO/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO 2026-10-10 03:37:29,502 root INFO copying Bio/SearchIO/FastaIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO 2026-10-10 03:37:29,503 root INFO copying Bio/SearchIO/BlatIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO 2026-10-10 03:37:29,503 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/_model 2026-10-10 03:37:29,503 root INFO copying Bio/SearchIO/_model/query.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/_model 2026-10-10 03:37:29,504 root INFO copying Bio/SearchIO/_model/_base.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/_model 2026-10-10 03:37:29,504 root INFO copying Bio/SearchIO/_model/hit.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/_model 2026-10-10 03:37:29,505 root INFO copying Bio/SearchIO/_model/hsp.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/_model 2026-10-10 03:37:29,505 root INFO copying Bio/SearchIO/_model/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/_model 2026-10-10 03:37:29,506 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/BlastIO 2026-10-10 03:37:29,506 root INFO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/BlastIO 2026-10-10 03:37:29,506 root INFO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/BlastIO 2026-10-10 03:37:29,507 root INFO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/BlastIO 2026-10-10 03:37:29,507 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/HHsuiteIO 2026-10-10 03:37:29,508 root INFO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/HHsuiteIO 2026-10-10 03:37:29,508 root INFO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/HHsuiteIO 2026-10-10 03:37:29,509 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/HmmerIO 2026-10-10 03:37:29,509 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/HmmerIO 2026-10-10 03:37:29,509 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/HmmerIO 2026-10-10 03:37:29,510 root INFO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/HmmerIO 2026-10-10 03:37:29,510 root INFO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/HmmerIO 2026-10-10 03:37:29,510 root INFO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/HmmerIO 2026-10-10 03:37:29,511 root INFO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/HmmerIO 2026-10-10 03:37:29,511 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/InfernalIO 2026-10-10 03:37:29,512 root INFO copying Bio/SearchIO/InfernalIO/_base.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/InfernalIO 2026-10-10 03:37:29,512 root INFO copying Bio/SearchIO/InfernalIO/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/InfernalIO 2026-10-10 03:37:29,512 root INFO copying Bio/SearchIO/InfernalIO/infernal_tab.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/InfernalIO 2026-10-10 03:37:29,513 root INFO copying Bio/SearchIO/InfernalIO/infernal_text.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/InfernalIO 2026-10-10 03:37:29,513 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/ExonerateIO 2026-10-10 03:37:29,514 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/ExonerateIO 2026-10-10 03:37:29,514 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/ExonerateIO 2026-10-10 03:37:29,515 root INFO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/ExonerateIO 2026-10-10 03:37:29,515 root INFO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/ExonerateIO 2026-10-10 03:37:29,515 root INFO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/ExonerateIO 2026-10-10 03:37:29,516 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/InterproscanIO 2026-10-10 03:37:29,516 root INFO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/InterproscanIO 2026-10-10 03:37:29,517 root INFO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/InterproscanIO 2026-10-10 03:37:29,517 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:29,518 root INFO copying Bio/SeqIO/GfaIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:29,518 root INFO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:29,518 root INFO copying Bio/SeqIO/AbiIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:29,519 root INFO copying Bio/SeqIO/NibIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:29,519 root INFO copying Bio/SeqIO/SwissIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:29,520 root INFO copying Bio/SeqIO/TabIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:29,520 root INFO copying Bio/SeqIO/PirIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:29,520 root INFO copying Bio/SeqIO/SffIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:29,521 root INFO copying Bio/SeqIO/IgIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:29,521 root INFO copying Bio/SeqIO/InsdcIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:29,522 root INFO copying Bio/SeqIO/_index.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:29,522 root INFO copying Bio/SeqIO/PdbIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:29,523 root INFO copying Bio/SeqIO/UniprotIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:29,523 root INFO copying Bio/SeqIO/XdnaIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:29,524 root INFO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:29,524 root INFO copying Bio/SeqIO/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:29,524 root INFO copying Bio/SeqIO/QualityIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:29,525 root INFO copying Bio/SeqIO/GckIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:29,525 root INFO copying Bio/SeqIO/PhdIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:29,526 root INFO copying Bio/SeqIO/FastaIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:29,526 root INFO copying Bio/SeqIO/TwoBitIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:29,527 root INFO copying Bio/SeqIO/AceIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:29,527 root INFO copying Bio/SeqIO/Interfaces.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:29,528 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/SeqUtils 2026-10-10 03:37:29,528 root INFO copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqUtils 2026-10-10 03:37:29,528 root INFO copying Bio/SeqUtils/ProtParam.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqUtils 2026-10-10 03:37:29,529 root INFO copying Bio/SeqUtils/MeltingTemp.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqUtils 2026-10-10 03:37:29,529 root INFO copying Bio/SeqUtils/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqUtils 2026-10-10 03:37:29,529 root INFO copying Bio/SeqUtils/CheckSum.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqUtils 2026-10-10 03:37:29,530 root INFO copying Bio/SeqUtils/lcc.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqUtils 2026-10-10 03:37:29,530 root INFO copying Bio/SeqUtils/ProtParamData.py -> build/lib.linux-loongarch64-cpython-314/Bio/SeqUtils 2026-10-10 03:37:29,531 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/Sequencing 2026-10-10 03:37:29,531 root INFO copying Bio/Sequencing/Phd.py -> build/lib.linux-loongarch64-cpython-314/Bio/Sequencing 2026-10-10 03:37:29,531 root INFO copying Bio/Sequencing/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/Sequencing 2026-10-10 03:37:29,532 root INFO copying Bio/Sequencing/Ace.py -> build/lib.linux-loongarch64-cpython-314/Bio/Sequencing 2026-10-10 03:37:29,532 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/SVDSuperimposer 2026-10-10 03:37:29,533 root INFO copying Bio/SVDSuperimposer/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/SVDSuperimposer 2026-10-10 03:37:29,533 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/SwissProt 2026-10-10 03:37:29,533 root INFO copying Bio/SwissProt/KeyWList.py -> build/lib.linux-loongarch64-cpython-314/Bio/SwissProt 2026-10-10 03:37:29,534 root INFO copying Bio/SwissProt/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/SwissProt 2026-10-10 03:37:29,534 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/TogoWS 2026-10-10 03:37:29,535 root INFO copying Bio/TogoWS/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/TogoWS 2026-10-10 03:37:29,535 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/Phylo 2026-10-10 03:37:29,535 root INFO copying Bio/Phylo/NewickIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo 2026-10-10 03:37:29,536 root INFO copying Bio/Phylo/PhyloXML.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo 2026-10-10 03:37:29,536 root INFO copying Bio/Phylo/_utils.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo 2026-10-10 03:37:29,537 root INFO copying Bio/Phylo/NeXMLIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo 2026-10-10 03:37:29,537 root INFO copying Bio/Phylo/NeXML.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo 2026-10-10 03:37:29,538 root INFO copying Bio/Phylo/Newick.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo 2026-10-10 03:37:29,538 root INFO copying Bio/Phylo/BaseTree.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo 2026-10-10 03:37:29,538 root INFO copying Bio/Phylo/TreeConstruction.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo 2026-10-10 03:37:29,539 root INFO copying Bio/Phylo/PhyloXMLIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo 2026-10-10 03:37:29,539 root INFO copying Bio/Phylo/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo 2026-10-10 03:37:29,540 root INFO copying Bio/Phylo/Consensus.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo 2026-10-10 03:37:29,540 root INFO copying Bio/Phylo/CDAOIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo 2026-10-10 03:37:29,541 root INFO copying Bio/Phylo/_cdao_owl.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo 2026-10-10 03:37:29,541 root INFO copying Bio/Phylo/CDAO.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo 2026-10-10 03:37:29,541 root INFO copying Bio/Phylo/_io.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo 2026-10-10 03:37:29,542 root INFO copying Bio/Phylo/NexusIO.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo 2026-10-10 03:37:29,542 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/Phylo/PAML 2026-10-10 03:37:29,543 root INFO copying Bio/Phylo/PAML/chi2.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo/PAML 2026-10-10 03:37:29,543 root INFO copying Bio/Phylo/PAML/yn00.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo/PAML 2026-10-10 03:37:29,543 root INFO copying Bio/Phylo/PAML/codeml.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo/PAML 2026-10-10 03:37:29,544 root INFO copying Bio/Phylo/PAML/baseml.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo/PAML 2026-10-10 03:37:29,544 root INFO copying Bio/Phylo/PAML/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo/PAML 2026-10-10 03:37:29,545 root INFO copying Bio/Phylo/PAML/_paml.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo/PAML 2026-10-10 03:37:29,545 root INFO copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo/PAML 2026-10-10 03:37:29,546 root INFO copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo/PAML 2026-10-10 03:37:29,546 root INFO copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.linux-loongarch64-cpython-314/Bio/Phylo/PAML 2026-10-10 03:37:29,546 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/UniGene 2026-10-10 03:37:29,547 root INFO copying Bio/UniGene/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/UniGene 2026-10-10 03:37:29,547 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/UniProt 2026-10-10 03:37:29,547 root INFO copying Bio/UniProt/__init__.py -> build/lib.linux-loongarch64-cpython-314/Bio/UniProt 2026-10-10 03:37:29,548 root INFO copying Bio/UniProt/GOA.py -> build/lib.linux-loongarch64-cpython-314/Bio/UniProt 2026-10-10 03:37:29,548 root INFO creating build/lib.linux-loongarch64-cpython-314/BioSQL 2026-10-10 03:37:29,549 root INFO copying BioSQL/Loader.py -> build/lib.linux-loongarch64-cpython-314/BioSQL 2026-10-10 03:37:29,549 root INFO copying BioSQL/BioSeqDatabase.py -> build/lib.linux-loongarch64-cpython-314/BioSQL 2026-10-10 03:37:29,550 root INFO copying BioSQL/__init__.py -> build/lib.linux-loongarch64-cpython-314/BioSQL 2026-10-10 03:37:29,550 root INFO copying BioSQL/BioSeq.py -> build/lib.linux-loongarch64-cpython-314/BioSQL 2026-10-10 03:37:29,550 root INFO copying BioSQL/DBUtils.py -> build/lib.linux-loongarch64-cpython-314/BioSQL 2026-10-10 03:37:29,551 root INFO running egg_info 2026-10-10 03:37:29,554 root INFO writing biopython.egg-info/PKG-INFO 2026-10-10 03:37:29,555 root INFO writing dependency_links to biopython.egg-info/dependency_links.txt 2026-10-10 03:37:29,556 root INFO writing requirements to biopython.egg-info/requires.txt 2026-10-10 03:37:29,556 root INFO writing top-level names to biopython.egg-info/top_level.txt 2026-10-10 03:37:29,579 root INFO reading manifest file 'biopython.egg-info/SOURCES.txt' 2026-10-10 03:37:29,633 root INFO reading manifest template 'MANIFEST.in' 2026-10-10 03:37:29,737 root WARNING warning: no previously-included files found matching 'Doc/_build' 2026-10-10 03:37:29,746 root WARNING warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' 2026-10-10 03:37:29,751 root WARNING warning: no previously-included files matching '*.pyc' found anywhere in distribution 2026-10-10 03:37:29,757 root WARNING warning: no previously-included files matching '*.pyo' found anywhere in distribution 2026-10-10 03:37:29,763 root WARNING warning: no previously-included files matching '*.py{}' found anywhere in distribution 2026-10-10 03:37:29,768 root WARNING warning: no previously-included files matching '*.py-e' found anywhere in distribution 2026-10-10 03:37:29,778 root WARNING warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' 2026-10-10 03:37:29,778 root INFO adding license file 'LICENSE.rst' 2026-10-10 03:37:29,824 root INFO writing manifest file 'biopython.egg-info/SOURCES.txt' 2026-10-10 03:37:29,855 root INFO copying Bio/cpairwise2module.c -> build/lib.linux-loongarch64-cpython-314/Bio 2026-10-10 03:37:29,855 root INFO copying Bio/py.typed -> build/lib.linux-loongarch64-cpython-314/Bio 2026-10-10 03:37:29,856 root INFO copying Bio/Align/_aligncore.c -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,856 root INFO copying Bio/Align/_alignmentcounts.c -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,857 root INFO copying Bio/Align/_codonaligner.c -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,857 root INFO copying Bio/Align/_pairwisealigner.c -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,858 root INFO copying Bio/Align/_pairwisealigner.h -> build/lib.linux-loongarch64-cpython-314/Bio/Align 2026-10-10 03:37:29,858 root INFO copying Bio/Align/substitution_matrices/_arraycore.c -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices 2026-10-10 03:37:29,859 root INFO copying Bio/Align/substitution_matrices/_arraycore.h -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices 2026-10-10 03:37:29,859 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,859 root INFO copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,860 root INFO copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,860 root INFO copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,861 root INFO copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,861 root INFO copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,861 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,862 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,862 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,863 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,863 root INFO copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,864 root INFO copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,864 root INFO copying Bio/Align/substitution_matrices/data/FENG -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,864 root INFO copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,865 root INFO copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,865 root INFO copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,866 root INFO copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,866 root INFO copying Bio/Align/substitution_matrices/data/JONES -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,867 root INFO copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,867 root INFO copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,867 root INFO copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,868 root INFO copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,868 root INFO copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,869 root INFO copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,869 root INFO copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,869 root INFO copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,870 root INFO copying Bio/Align/substitution_matrices/data/RAO -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,870 root INFO copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,871 root INFO copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,871 root INFO copying Bio/Align/substitution_matrices/data/STR -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,872 root INFO copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data 2026-10-10 03:37:29,872 root INFO copying Bio/Cluster/cluster.c -> build/lib.linux-loongarch64-cpython-314/Bio/Cluster 2026-10-10 03:37:29,873 root INFO copying Bio/Cluster/cluster.h -> build/lib.linux-loongarch64-cpython-314/Bio/Cluster 2026-10-10 03:37:29,873 root INFO copying Bio/Cluster/clustermodule.c -> build/lib.linux-loongarch64-cpython-314/Bio/Cluster 2026-10-10 03:37:29,874 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,874 root INFO copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,874 root INFO copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,875 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,875 root INFO copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,876 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,876 root INFO copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,877 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,877 root INFO copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,877 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,878 root INFO copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,878 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,879 root INFO copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,879 root INFO copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,880 root INFO copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,880 root INFO copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,880 root INFO copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,881 root INFO copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,881 root INFO copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,882 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,882 root INFO copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,882 root INFO copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,883 root INFO copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,883 root INFO copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,884 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,884 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,885 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,885 root INFO copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,886 root INFO copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,886 root INFO copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,887 root INFO copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,887 root INFO copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,888 root INFO copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,888 root INFO copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,889 root INFO copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,889 root INFO copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,890 root INFO copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,890 root INFO copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,891 root INFO copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,891 root INFO copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,892 root INFO copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,892 root INFO copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,893 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,893 root INFO copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,894 root INFO copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,894 root INFO copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,895 root INFO copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,895 root INFO copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,896 root INFO copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,896 root INFO copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,897 root INFO copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,897 root INFO copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,897 root INFO copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,898 root INFO copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,898 root INFO copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,899 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,899 root INFO copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,900 root INFO copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,900 root INFO copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,900 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,901 root INFO copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,901 root INFO copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,902 root INFO copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,902 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,903 root INFO copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,903 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,903 root INFO copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,904 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,904 root INFO copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,905 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,905 root INFO copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,906 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,906 root INFO copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,906 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,907 root INFO copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,907 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,908 root INFO copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,908 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,909 root INFO copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,909 root INFO copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,909 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,910 root INFO copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,910 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,911 root INFO copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,911 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,912 root INFO copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,912 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,912 root INFO copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,913 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,913 root INFO copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,914 root INFO copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,914 root INFO copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,914 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,915 root INFO copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,915 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,916 root INFO copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,916 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,917 root INFO copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,917 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,917 root INFO copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,918 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,918 root INFO copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,919 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,919 root INFO copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,919 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,920 root INFO copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,920 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,921 root INFO copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,921 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,922 root INFO copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,922 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,922 root INFO copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,923 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,923 root INFO copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,924 root INFO copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,924 root INFO copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,925 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,925 root INFO copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,925 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,926 root INFO copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,926 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,927 root INFO copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,927 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,928 root INFO copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,928 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,928 root INFO copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,929 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,929 root INFO copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,930 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,930 root INFO copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,930 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,931 root INFO copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,931 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,932 root INFO copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,932 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,933 root INFO copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,933 root INFO copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,933 root INFO copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,934 root INFO copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,934 root INFO copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,935 root INFO copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,935 root INFO copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,936 root INFO copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,936 root INFO copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,936 root INFO copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,937 root INFO copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,937 root INFO copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,938 root INFO copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,938 root INFO copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,939 root INFO copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,939 root INFO copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,940 root INFO copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,940 root INFO copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,940 root INFO copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,941 root INFO copying 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build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,964 root INFO copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,964 root INFO copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,965 root INFO copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,965 root INFO copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,966 root INFO copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,966 root INFO copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,966 root INFO copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,967 root INFO copying Bio/Entrez/DTDs/isobox.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,967 root INFO copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,968 root INFO copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,968 root INFO copying Bio/Entrez/DTDs/isodia.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,968 root INFO copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,969 root INFO copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,969 root INFO copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,970 root INFO copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 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build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,974 root INFO copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,974 root INFO copying Bio/Entrez/DTDs/link.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,974 root INFO copying Bio/Entrez/DTDs/list.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,975 root INFO copying Bio/Entrez/DTDs/math.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,975 root INFO copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,976 root INFO copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,976 root INFO copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,977 root INFO copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,977 root INFO copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,978 root INFO copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,978 root INFO copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,979 root INFO copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,979 root INFO copying Bio/Entrez/DTDs/modules.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,979 root INFO copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,980 root INFO copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,980 root INFO copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,981 root INFO copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,981 root INFO copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,982 root INFO copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,982 root INFO copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,983 root INFO copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,983 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,983 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,984 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,984 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,985 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,985 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,986 root INFO copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,986 root INFO copying 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build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,992 root INFO copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,993 root INFO copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,993 root INFO copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,994 root INFO copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,994 root INFO copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,995 root INFO copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,995 root INFO copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,995 root INFO copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,996 root INFO copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,996 root INFO copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,997 root INFO copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,997 root INFO copying Bio/Entrez/DTDs/pubmed_230101.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,998 root INFO copying Bio/Entrez/DTDs/pubmed_240101.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,998 root INFO copying Bio/Entrez/DTDs/pubmed_250101.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,998 root INFO copying Bio/Entrez/DTDs/references.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,999 root INFO copying Bio/Entrez/DTDs/section.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:29,999 root INFO copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:30,000 root INFO copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:30,000 root INFO copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:30,001 root INFO copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs 2026-10-10 03:37:30,001 root INFO creating build/lib.linux-loongarch64-cpython-314/Bio/Entrez/XSDs 2026-10-10 03:37:30,001 root INFO copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/XSDs 2026-10-10 03:37:30,002 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/XSDs 2026-10-10 03:37:30,002 root INFO copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.linux-loongarch64-cpython-314/Bio/Entrez/XSDs 2026-10-10 03:37:30,003 root INFO copying Bio/motifs/_pwm.c -> build/lib.linux-loongarch64-cpython-314/Bio/motifs 2026-10-10 03:37:30,003 root INFO copying Bio/Nexus/cnexus.c -> build/lib.linux-loongarch64-cpython-314/Bio/Nexus 2026-10-10 03:37:30,003 root INFO copying Bio/PDB/bcifhelpermodule.c -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:30,004 root INFO copying Bio/PDB/ccealignmodule.c -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:30,004 root INFO copying Bio/PDB/kdtrees.c -> build/lib.linux-loongarch64-cpython-314/Bio/PDB 2026-10-10 03:37:30,005 root INFO copying Bio/SeqIO/_twoBitIO.c -> build/lib.linux-loongarch64-cpython-314/Bio/SeqIO 2026-10-10 03:37:30,005 root INFO copying BioSQL/py.typed -> build/lib.linux-loongarch64-cpython-314/BioSQL 2026-10-10 03:37:30,014 root INFO running build_ext 2026-10-10 03:37:30,018 root INFO building 'Bio.Align._aligncore' extension 2026-10-10 03:37:30,019 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Align/_aligncore.c -o build/temp.linux-loongarch64-cpython-314/Bio/Align/_aligncore.o 2026-10-10 03:37:30,405 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-314/Bio/Align/_aligncore.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-314/Bio/Align/_aligncore.cpython-314-loongarch64-linux-musl.so 2026-10-10 03:37:30,421 root INFO building 'Bio.Align._alignmentcounts' extension 2026-10-10 03:37:30,421 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Align/_alignmentcounts.c -o build/temp.linux-loongarch64-cpython-314/Bio/Align/_alignmentcounts.o 2026-10-10 03:37:31,553 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-314/Bio/Align/_alignmentcounts.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-314/Bio/Align/_alignmentcounts.cpython-314-loongarch64-linux-musl.so 2026-10-10 03:37:31,571 root INFO building 'Bio.Align._codonaligner' extension 2026-10-10 03:37:31,571 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Align/_codonaligner.c -o build/temp.linux-loongarch64-cpython-314/Bio/Align/_codonaligner.o 2026-10-10 03:37:32,432 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-314/Bio/Align/_codonaligner.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-314/Bio/Align/_codonaligner.cpython-314-loongarch64-linux-musl.so 2026-10-10 03:37:32,449 root INFO building 'Bio.Align._pairwisealigner' extension 2026-10-10 03:37:32,449 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-loongarch64-cpython-314/Bio/Align/_pairwisealigner.o 2026-10-10 03:37:42,473 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-314/Bio/Align/_pairwisealigner.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-314/Bio/Align/_pairwisealigner.cpython-314-loongarch64-linux-musl.so 2026-10-10 03:37:42,496 root INFO building 'Bio.Align.substitution_matrices._arraycore' extension 2026-10-10 03:37:42,497 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Align/substitution_matrices/_arraycore.c -o build/temp.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/_arraycore.o 2026-10-10 03:37:42,796 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/_arraycore.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/_arraycore.cpython-314-loongarch64-linux-musl.so 2026-10-10 03:37:42,811 root INFO building 'Bio.cpairwise2' extension 2026-10-10 03:37:42,812 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/cpairwise2module.c -o build/temp.linux-loongarch64-cpython-314/Bio/cpairwise2module.o 2026-10-10 03:37:43,289 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-314/Bio/cpairwise2module.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-314/Bio/cpairwise2.cpython-314-loongarch64-linux-musl.so 2026-10-10 03:37:43,304 root INFO building 'Bio.Nexus.cnexus' extension 2026-10-10 03:37:43,305 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Nexus/cnexus.c -o build/temp.linux-loongarch64-cpython-314/Bio/Nexus/cnexus.o 2026-10-10 03:37:43,509 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-314/Bio/Nexus/cnexus.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-314/Bio/Nexus/cnexus.cpython-314-loongarch64-linux-musl.so 2026-10-10 03:37:43,524 root INFO building 'Bio.motifs._pwm' extension 2026-10-10 03:37:43,525 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/motifs/_pwm.c -o build/temp.linux-loongarch64-cpython-314/Bio/motifs/_pwm.o 2026-10-10 03:37:43,758 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-314/Bio/motifs/_pwm.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-314/Bio/motifs/_pwm.cpython-314-loongarch64-linux-musl.so 2026-10-10 03:37:43,773 root INFO building 'Bio.Cluster._cluster' extension 2026-10-10 03:37:43,774 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Cluster/cluster.c -o build/temp.linux-loongarch64-cpython-314/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY 2026-10-10 03:37:47,016 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/Cluster/clustermodule.c -o build/temp.linux-loongarch64-cpython-314/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY 2026-10-10 03:37:48,126 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-314/Bio/Cluster/cluster.o build/temp.linux-loongarch64-cpython-314/Bio/Cluster/clustermodule.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-314/Bio/Cluster/_cluster.cpython-314-loongarch64-linux-musl.so 2026-10-10 03:37:48,146 root INFO building 'Bio.PDB.ccealign' extension 2026-10-10 03:37:48,146 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-loongarch64-cpython-314/Bio/PDB/ccealignmodule.o 2026-10-10 03:37:48,664 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-314/Bio/PDB/ccealignmodule.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-314/Bio/PDB/ccealign.cpython-314-loongarch64-linux-musl.so 2026-10-10 03:37:48,680 root INFO building 'Bio.PDB.kdtrees' extension 2026-10-10 03:37:48,681 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/PDB/kdtrees.c -o build/temp.linux-loongarch64-cpython-314/Bio/PDB/kdtrees.o 2026-10-10 03:37:49,353 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-314/Bio/PDB/kdtrees.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-314/Bio/PDB/kdtrees.cpython-314-loongarch64-linux-musl.so 2026-10-10 03:37:49,372 root INFO building 'Bio.PDB._bcif_helper' extension 2026-10-10 03:37:49,373 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/PDB/bcifhelpermodule.c -o build/temp.linux-loongarch64-cpython-314/Bio/PDB/bcifhelpermodule.o 2026-10-10 03:37:49,611 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-314/Bio/PDB/bcifhelpermodule.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-314/Bio/PDB/_bcif_helper.cpython-314-loongarch64-linux-musl.so 2026-10-10 03:37:49,627 root INFO building 'Bio.SeqIO._twoBitIO' extension 2026-10-10 03:37:49,627 compilers.C.base INFO cc -Os -fstack-clash-protection -Wformat -Werror=format-security -fPIC -I/usr/include/python3.14 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-loongarch64-cpython-314/Bio/SeqIO/_twoBitIO.o 2026-10-10 03:37:49,927 compilers.C.base INFO cc -shared -Wl,-z,stack-size=1048576 -Wl,--as-needed,-O1,--sort-common -Wl,-z,pack-relative-relocs -Os -fstack-clash-protection -Wformat -Werror=format-security build/temp.linux-loongarch64-cpython-314/Bio/SeqIO/_twoBitIO.o -L/usr/lib -o build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/_twoBitIO.cpython-314-loongarch64-linux-musl.so 2026-10-10 03:37:49,949 root INFO installing to build/bdist.linux-loongarch64/wheel 2026-10-10 03:37:49,949 root INFO running install 2026-10-10 03:37:49,963 root INFO running install_lib 2026-10-10 03:37:49,966 root INFO creating build/bdist.linux-loongarch64/wheel 2026-10-10 03:37:49,966 root INFO creating build/bdist.linux-loongarch64/wheel/Bio 2026-10-10 03:37:49,967 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/PopGen 2026-10-10 03:37:49,967 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/PopGen/GenePop 2026-10-10 03:37:49,967 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PopGen/GenePop/LargeFileParser.py -> build/bdist.linux-loongarch64/wheel/./Bio/PopGen/GenePop 2026-10-10 03:37:49,968 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PopGen/GenePop/FileParser.py -> build/bdist.linux-loongarch64/wheel/./Bio/PopGen/GenePop 2026-10-10 03:37:49,968 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PopGen/GenePop/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/PopGen/GenePop 2026-10-10 03:37:49,969 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PopGen/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/PopGen 2026-10-10 03:37:49,969 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/NMR 2026-10-10 03:37:49,969 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/NMR/xpktools.py -> build/bdist.linux-loongarch64/wheel/./Bio/NMR 2026-10-10 03:37:49,970 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/NMR/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/NMR 2026-10-10 03:37:49,970 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/NMR/NOEtools.py -> build/bdist.linux-loongarch64/wheel/./Bio/NMR 2026-10-10 03:37:49,971 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/ExPASy 2026-10-10 03:37:49,971 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/ExPASy/ScanProsite.py -> build/bdist.linux-loongarch64/wheel/./Bio/ExPASy 2026-10-10 03:37:49,971 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/ExPASy/Prodoc.py -> build/bdist.linux-loongarch64/wheel/./Bio/ExPASy 2026-10-10 03:37:49,972 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/ExPASy/Prosite.py -> build/bdist.linux-loongarch64/wheel/./Bio/ExPASy 2026-10-10 03:37:49,972 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/ExPASy/Enzyme.py -> build/bdist.linux-loongarch64/wheel/./Bio/ExPASy 2026-10-10 03:37:49,972 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/ExPASy/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/ExPASy 2026-10-10 03:37:49,973 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/ExPASy/cellosaurus.py -> build/bdist.linux-loongarch64/wheel/./Bio/ExPASy 2026-10-10 03:37:49,973 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/pairwise2.py -> build/bdist.linux-loongarch64/wheel/./Bio 2026-10-10 03:37:49,974 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/AlignIO 2026-10-10 03:37:49,974 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/AlignIO/MsfIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO 2026-10-10 03:37:49,974 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/AlignIO/EmbossIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO 2026-10-10 03:37:49,975 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/AlignIO/StockholmIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO 2026-10-10 03:37:49,975 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/AlignIO/ClustalIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO 2026-10-10 03:37:49,975 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/AlignIO/MafIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO 2026-10-10 03:37:49,976 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/AlignIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO 2026-10-10 03:37:49,976 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/AlignIO/FastaIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO 2026-10-10 03:37:49,977 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/AlignIO/PhylipIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO 2026-10-10 03:37:49,977 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/AlignIO/MauveIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO 2026-10-10 03:37:49,977 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/AlignIO/NexusIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO 2026-10-10 03:37:49,978 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/AlignIO/Interfaces.py -> build/bdist.linux-loongarch64/wheel/./Bio/AlignIO 2026-10-10 03:37:49,978 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqRecord.py -> build/bdist.linux-loongarch64/wheel/./Bio 2026-10-10 03:37:49,978 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/_utils.py -> build/bdist.linux-loongarch64/wheel/./Bio 2026-10-10 03:37:49,979 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/cpairwise2module.c -> build/bdist.linux-loongarch64/wheel/./Bio 2026-10-10 03:37:49,979 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/CAPS 2026-10-10 03:37:49,980 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/CAPS/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/CAPS 2026-10-10 03:37:49,980 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Blast 2026-10-10 03:37:49,980 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Blast/_writers.py -> build/bdist.linux-loongarch64/wheel/./Bio/Blast 2026-10-10 03:37:49,981 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Blast/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Blast 2026-10-10 03:37:49,981 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Blast/NCBIWWW.py -> build/bdist.linux-loongarch64/wheel/./Bio/Blast 2026-10-10 03:37:49,981 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Blast/NCBIXML.py -> build/bdist.linux-loongarch64/wheel/./Bio/Blast 2026-10-10 03:37:49,982 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Blast/_parser.py -> build/bdist.linux-loongarch64/wheel/./Bio/Blast 2026-10-10 03:37:49,982 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/cpairwise2.cpython-314-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio 2026-10-10 03:37:49,983 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Emboss 2026-10-10 03:37:49,983 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Emboss/PrimerSearch.py -> build/bdist.linux-loongarch64/wheel/./Bio/Emboss 2026-10-10 03:37:49,984 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Emboss/Primer3.py -> build/bdist.linux-loongarch64/wheel/./Bio/Emboss 2026-10-10 03:37:49,984 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Emboss/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Emboss 2026-10-10 03:37:49,984 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/TogoWS 2026-10-10 03:37:49,985 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/TogoWS/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/TogoWS 2026-10-10 03:37:49,985 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/PDB 2026-10-10 03:37:49,985 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/Chain.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,986 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/parse_pdb_header.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,986 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/Structure.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,986 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/NACCESS.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,987 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/MMCIFParser.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,987 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/internal_coords.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,988 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/StructureAlignment.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,988 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/Polypeptide.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,988 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/StructureBuilder.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,989 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/Selection.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,989 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/_bcif_helper.cpython-314-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,990 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/PICIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,990 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/PDBMLParser.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,990 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/Dice.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,991 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/ic_rebuild.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,991 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/kdtrees.cpython-314-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,992 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/AbstractPropertyMap.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,992 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/ccealign.cpython-314-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,993 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/cealign.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,993 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/DSSP.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,993 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/alphafold_db.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,994 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/HSExposure.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,994 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/PDBIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,994 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/Residue.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,995 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/ic_data.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,995 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/PSEA.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,996 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/FragmentMapper.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,996 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/vectors.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,996 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,997 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/MMCIF2Dict.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,997 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/mmcifio.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,997 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/binary_cif.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,998 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/NeighborSearch.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,998 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/bcifhelpermodule.c -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,999 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/Atom.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,999 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/ResidueDepth.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:49,999 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/PDBList.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:50,000 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/Model.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:50,000 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/Entity.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:50,000 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/PDBParser.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:50,001 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/kdtrees.c -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:50,001 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/Superimposer.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:50,002 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/ccealignmodule.c -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:50,002 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/qcprot.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:50,002 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/SCADIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:50,003 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/SASA.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:50,003 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/PDB/mmtf 2026-10-10 03:37:50,004 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/mmtf/DefaultParser.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB/mmtf 2026-10-10 03:37:50,004 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/mmtf/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB/mmtf 2026-10-10 03:37:50,004 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/mmtf/mmtfio.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB/mmtf 2026-10-10 03:37:50,005 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/PDB/PDBExceptions.py -> build/bdist.linux-loongarch64/wheel/./Bio/PDB 2026-10-10 03:37:50,005 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SwissProt 2026-10-10 03:37:50,005 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SwissProt/KeyWList.py -> build/bdist.linux-loongarch64/wheel/./Bio/SwissProt 2026-10-10 03:37:50,006 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SwissProt/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SwissProt 2026-10-10 03:37:50,006 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SeqUtils 2026-10-10 03:37:50,006 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqUtils/IsoelectricPoint.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqUtils 2026-10-10 03:37:50,007 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqUtils/ProtParam.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqUtils 2026-10-10 03:37:50,007 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqUtils/MeltingTemp.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqUtils 2026-10-10 03:37:50,008 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqUtils/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqUtils 2026-10-10 03:37:50,008 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqUtils/CheckSum.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqUtils 2026-10-10 03:37:50,008 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqUtils/lcc.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqUtils 2026-10-10 03:37:50,009 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqUtils/ProtParamData.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqUtils 2026-10-10 03:37:50,009 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Geo 2026-10-10 03:37:50,009 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Geo/Record.py -> build/bdist.linux-loongarch64/wheel/./Bio/Geo 2026-10-10 03:37:50,010 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Geo/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Geo 2026-10-10 03:37:50,010 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/py.typed -> build/bdist.linux-loongarch64/wheel/./Bio 2026-10-10 03:37:50,011 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/UniProt 2026-10-10 03:37:50,011 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/UniProt/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/UniProt 2026-10-10 03:37:50,011 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/UniProt/GOA.py -> build/bdist.linux-loongarch64/wheel/./Bio/UniProt 2026-10-10 03:37:50,012 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SCOP 2026-10-10 03:37:50,012 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SCOP/Hie.py -> build/bdist.linux-loongarch64/wheel/./Bio/SCOP 2026-10-10 03:37:50,012 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SCOP/Raf.py -> build/bdist.linux-loongarch64/wheel/./Bio/SCOP 2026-10-10 03:37:50,013 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SCOP/Dom.py -> build/bdist.linux-loongarch64/wheel/./Bio/SCOP 2026-10-10 03:37:50,013 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SCOP/Cla.py -> build/bdist.linux-loongarch64/wheel/./Bio/SCOP 2026-10-10 03:37:50,013 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SCOP/Des.py -> build/bdist.linux-loongarch64/wheel/./Bio/SCOP 2026-10-10 03:37:50,014 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SCOP/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SCOP 2026-10-10 03:37:50,014 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SCOP/Residues.py -> build/bdist.linux-loongarch64/wheel/./Bio/SCOP 2026-10-10 03:37:50,015 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SearchIO 2026-10-10 03:37:50,015 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SearchIO/InfernalIO 2026-10-10 03:37:50,015 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/InfernalIO/_base.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/InfernalIO 2026-10-10 03:37:50,016 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/InfernalIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/InfernalIO 2026-10-10 03:37:50,016 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/InfernalIO/infernal_tab.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/InfernalIO 2026-10-10 03:37:50,016 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/InfernalIO/infernal_text.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/InfernalIO 2026-10-10 03:37:50,017 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/_utils.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO 2026-10-10 03:37:50,017 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/_index.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO 2026-10-10 03:37:50,017 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SearchIO/_model 2026-10-10 03:37:50,018 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/_model/query.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/_model 2026-10-10 03:37:50,018 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/_model/_base.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/_model 2026-10-10 03:37:50,018 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/_model/hit.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/_model 2026-10-10 03:37:50,019 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/_model/hsp.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/_model 2026-10-10 03:37:50,019 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/_model/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/_model 2026-10-10 03:37:50,020 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SearchIO/BlastIO 2026-10-10 03:37:50,020 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/BlastIO/blast_tab.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/BlastIO 2026-10-10 03:37:50,020 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/BlastIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/BlastIO 2026-10-10 03:37:50,021 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/BlastIO/blast_xml.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/BlastIO 2026-10-10 03:37:50,021 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SearchIO/HmmerIO 2026-10-10 03:37:50,022 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/HmmerIO 2026-10-10 03:37:50,022 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/HmmerIO 2026-10-10 03:37:50,022 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/HmmerIO/_base.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/HmmerIO 2026-10-10 03:37:50,023 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/HmmerIO 2026-10-10 03:37:50,023 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/HmmerIO 2026-10-10 03:37:50,023 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/HmmerIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/HmmerIO 2026-10-10 03:37:50,024 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO 2026-10-10 03:37:50,024 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SearchIO/InterproscanIO 2026-10-10 03:37:50,025 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/InterproscanIO 2026-10-10 03:37:50,025 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/InterproscanIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/InterproscanIO 2026-10-10 03:37:50,025 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SearchIO/ExonerateIO 2026-10-10 03:37:50,026 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/ExonerateIO 2026-10-10 03:37:50,026 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/ExonerateIO 2026-10-10 03:37:50,026 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/ExonerateIO/_base.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/ExonerateIO 2026-10-10 03:37:50,027 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/ExonerateIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/ExonerateIO 2026-10-10 03:37:50,027 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/ExonerateIO 2026-10-10 03:37:50,028 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/FastaIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO 2026-10-10 03:37:50,028 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SearchIO/HHsuiteIO 2026-10-10 03:37:50,028 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/HHsuiteIO 2026-10-10 03:37:50,029 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/HHsuiteIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO/HHsuiteIO 2026-10-10 03:37:50,029 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SearchIO/BlatIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SearchIO 2026-10-10 03:37:50,030 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/codonalign 2026-10-10 03:37:50,030 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/codonalign/codonseq.py -> build/bdist.linux-loongarch64/wheel/./Bio/codonalign 2026-10-10 03:37:50,030 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/codonalign/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/codonalign 2026-10-10 03:37:50,031 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/codonalign/codonalignment.py -> build/bdist.linux-loongarch64/wheel/./Bio/codonalign 2026-10-10 03:37:50,031 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Sequencing 2026-10-10 03:37:50,031 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Sequencing/Phd.py -> build/bdist.linux-loongarch64/wheel/./Bio/Sequencing 2026-10-10 03:37:50,032 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Sequencing/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Sequencing 2026-10-10 03:37:50,032 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Sequencing/Ace.py -> build/bdist.linux-loongarch64/wheel/./Bio/Sequencing 2026-10-10 03:37:50,033 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Pathway 2026-10-10 03:37:50,033 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Pathway/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Pathway 2026-10-10 03:37:50,033 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Pathway/Rep 2026-10-10 03:37:50,034 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Pathway/Rep/MultiGraph.py -> build/bdist.linux-loongarch64/wheel/./Bio/Pathway/Rep 2026-10-10 03:37:50,034 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Pathway/Rep/Graph.py -> build/bdist.linux-loongarch64/wheel/./Bio/Pathway/Rep 2026-10-10 03:37:50,034 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Pathway/Rep/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Pathway/Rep 2026-10-10 03:37:50,035 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Compass 2026-10-10 03:37:50,035 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Compass/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Compass 2026-10-10 03:37:50,035 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/GenBank 2026-10-10 03:37:50,036 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/GenBank/utils.py -> build/bdist.linux-loongarch64/wheel/./Bio/GenBank 2026-10-10 03:37:50,036 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/GenBank/Record.py -> build/bdist.linux-loongarch64/wheel/./Bio/GenBank 2026-10-10 03:37:50,036 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/GenBank/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/GenBank 2026-10-10 03:37:50,037 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/GenBank/Scanner.py -> build/bdist.linux-loongarch64/wheel/./Bio/GenBank 2026-10-10 03:37:50,037 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/motifs 2026-10-10 03:37:50,038 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/motifs/thresholds.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-10-10 03:37:50,038 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/motifs/_pwm.cpython-314-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-10-10 03:37:50,038 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/motifs/clusterbuster.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-10-10 03:37:50,039 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/motifs/matrix.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-10-10 03:37:50,039 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/motifs/meme.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-10-10 03:37:50,040 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/motifs/mast.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-10-10 03:37:50,040 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/motifs/minimal.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-10-10 03:37:50,040 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/motifs/pfm.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-10-10 03:37:50,041 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/motifs/_pwm.c -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-10-10 03:37:50,041 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/motifs/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-10-10 03:37:50,041 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/motifs/xms.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-10-10 03:37:50,042 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/motifs/alignace.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-10-10 03:37:50,042 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/motifs/jaspar 2026-10-10 03:37:50,042 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/motifs/jaspar/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs/jaspar 2026-10-10 03:37:50,043 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/motifs/jaspar/db.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs/jaspar 2026-10-10 03:37:50,043 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/motifs/transfac.py -> build/bdist.linux-loongarch64/wheel/./Bio/motifs 2026-10-10 03:37:50,044 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Medline 2026-10-10 03:37:50,044 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Medline/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Medline 2026-10-10 03:37:50,044 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SeqIO 2026-10-10 03:37:50,045 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/GfaIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,045 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/SeqXmlIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,045 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/AbiIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,046 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/NibIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,046 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/SwissIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,047 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/_twoBitIO.cpython-314-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,047 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/TabIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,047 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/PirIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,048 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/_twoBitIO.c -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,048 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/SffIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,049 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/IgIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,049 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/InsdcIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,049 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/_index.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,050 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/PdbIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,050 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/UniprotIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,051 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/XdnaIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,051 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/SnapGeneIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,051 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,052 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/QualityIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,052 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/GckIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,053 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/PhdIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,053 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/FastaIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,053 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/TwoBitIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,054 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/AceIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,054 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqIO/Interfaces.py -> build/bdist.linux-loongarch64/wheel/./Bio/SeqIO 2026-10-10 03:37:50,054 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SeqFeature.py -> build/bdist.linux-loongarch64/wheel/./Bio 2026-10-10 03:37:50,055 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/UniGene 2026-10-10 03:37:50,055 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/UniGene/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/UniGene 2026-10-10 03:37:50,056 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Align 2026-10-10 03:37:50,056 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/chain.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,056 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/_pairwisealigner.cpython-314-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,057 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/AlignInfo.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,057 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/nexus.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,058 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/_pairwisealigner.h -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,058 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/interfaces.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,058 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/_codonaligner.cpython-314-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,059 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/_aligncore.cpython-314-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,059 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/exonerate.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,060 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Align/substitution_matrices 2026-10-10 03:37:50,060 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,060 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/MDM78 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,061 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/JOHNSON -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,061 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/STR -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,062 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM80 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,062 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/BENNER22 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,062 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/LEVIN -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,063 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/RAO -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,063 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/GENETIC -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,063 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/FENG -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,064 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/JONES -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,064 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM45 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,064 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/RISLER -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,065 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/NUC.4.4 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,065 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM62 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,066 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/PAM250 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,066 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/GONNET1992 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,066 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/BENNER74 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,067 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/MEGABLAST -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,067 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/MCLACHLAN -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,067 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/HOXD70 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,068 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/TRANS -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,068 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/DAYHOFF -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,068 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/BLASTP -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,069 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM50 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,069 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/BLOSUM90 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,069 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/SCHNEIDER -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,070 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/BENNER6 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,070 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/BLASTN -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,071 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/PAM30 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,071 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/data/PAM70 -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices/data 2026-10-10 03:37:50,071 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/_arraycore.c -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices 2026-10-10 03:37:50,072 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/_arraycore.h -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices 2026-10-10 03:37:50,072 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/_arraycore.cpython-314-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices 2026-10-10 03:37:50,073 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/substitution_matrices/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align/substitution_matrices 2026-10-10 03:37:50,073 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/bigmaf.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,073 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/sam.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,074 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/bed.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,074 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/hhr.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,074 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/phylip.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,075 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/_alignmentcounts.c -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,075 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/msf.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,076 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/bigbed.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,076 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/mauve.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,076 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/_pairwisealigner.c -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,077 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/_aligncore.c -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,078 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/emboss.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,078 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/tabular.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,078 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,079 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/_alignmentcounts.cpython-314-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,079 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/analysis.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,080 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/psl.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,080 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/_codonaligner.c -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,081 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/bigpsl.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,081 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/clustal.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,081 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/a2m.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,082 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/stockholm.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,082 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/fasta.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,083 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Align/maf.py -> build/bdist.linux-loongarch64/wheel/./Bio/Align 2026-10-10 03:37:50,083 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/File.py -> build/bdist.linux-loongarch64/wheel/./Bio 2026-10-10 03:37:50,083 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Phylo 2026-10-10 03:37:50,084 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/NewickIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-10-10 03:37:50,084 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/PhyloXML.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-10-10 03:37:50,084 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/_utils.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-10-10 03:37:50,085 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/NeXMLIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-10-10 03:37:50,085 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/NeXML.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-10-10 03:37:50,086 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Phylo/PAML 2026-10-10 03:37:50,086 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/PAML/chi2.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML 2026-10-10 03:37:50,086 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/PAML/yn00.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML 2026-10-10 03:37:50,087 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/PAML/codeml.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML 2026-10-10 03:37:50,087 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/PAML/baseml.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML 2026-10-10 03:37:50,087 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/PAML/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML 2026-10-10 03:37:50,088 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/PAML/_paml.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML 2026-10-10 03:37:50,088 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/PAML/_parse_codeml.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML 2026-10-10 03:37:50,088 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/PAML/_parse_baseml.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML 2026-10-10 03:37:50,089 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/PAML/_parse_yn00.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo/PAML 2026-10-10 03:37:50,089 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/Newick.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-10-10 03:37:50,090 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/BaseTree.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-10-10 03:37:50,090 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/TreeConstruction.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-10-10 03:37:50,090 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/PhyloXMLIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-10-10 03:37:50,091 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-10-10 03:37:50,091 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/Consensus.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-10-10 03:37:50,092 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/CDAOIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-10-10 03:37:50,092 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/_cdao_owl.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-10-10 03:37:50,092 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/CDAO.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-10-10 03:37:50,093 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/_io.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-10-10 03:37:50,093 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Phylo/NexusIO.py -> build/bdist.linux-loongarch64/wheel/./Bio/Phylo 2026-10-10 03:37:50,094 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/phenotype 2026-10-10 03:37:50,094 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/phenotype/phen_micro.py -> build/bdist.linux-loongarch64/wheel/./Bio/phenotype 2026-10-10 03:37:50,094 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/phenotype/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/phenotype 2026-10-10 03:37:50,095 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/phenotype/pm_fitting.py -> build/bdist.linux-loongarch64/wheel/./Bio/phenotype 2026-10-10 03:37:50,095 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Alphabet 2026-10-10 03:37:50,095 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Alphabet/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Alphabet 2026-10-10 03:37:50,096 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio 2026-10-10 03:37:50,096 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Restriction 2026-10-10 03:37:50,096 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Restriction/PrintFormat.py -> build/bdist.linux-loongarch64/wheel/./Bio/Restriction 2026-10-10 03:37:50,097 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Restriction/Restriction.py -> build/bdist.linux-loongarch64/wheel/./Bio/Restriction 2026-10-10 03:37:50,097 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Restriction/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Restriction 2026-10-10 03:37:50,098 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Restriction/Restriction_Dictionary.py -> build/bdist.linux-loongarch64/wheel/./Bio/Restriction 2026-10-10 03:37:50,099 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Entrez 2026-10-10 03:37:50,099 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Entrez/DTDs 2026-10-10 03:37:50,100 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/isoamsa.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,100 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/phrase.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,100 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,101 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/JATS-link1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,101 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/isonum.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,102 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/esummary_gene.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,102 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,102 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/ePost_020511.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,103 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,103 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/chars.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,103 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,104 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/isogrk3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,104 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/notat.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,104 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/references.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,105 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/EMBL_General.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,105 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/pubmed_240101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,106 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,106 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/isoamsr.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,106 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/journalmeta.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,107 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/elink_020122.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,107 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,108 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,108 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,108 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,109 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,109 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/isogrk2.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,109 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,110 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,110 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/pubmed_080101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,110 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,111 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,111 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,112 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/default-mixes.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,112 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,112 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,113 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,113 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,113 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,114 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/MMDB.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,114 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,115 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/JATS-para1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,115 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,115 root INFO copying 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build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,150 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,150 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/archivearticle.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,151 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,151 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,151 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,152 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,152 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/pubmed_100301.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,152 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/pubmed_020114.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,153 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/common.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,153 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,154 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,154 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/archivecustom-classes.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,154 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,155 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/mathml3.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,155 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,156 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/PIR_General.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,156 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/display.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,156 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,157 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/PRF_General.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,157 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/SP_General.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,158 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,158 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,158 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,159 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,159 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,159 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,160 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,160 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,161 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/articlemeta.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,161 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/HomoloGene.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,162 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,162 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/isogrk1.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,162 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,163 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,163 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,163 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,164 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,164 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/isoamsb.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 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build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,167 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,167 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/isoamso.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,167 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/isoamsc.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,168 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/isoamsn.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,168 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/pubmed_180101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,169 root INFO copying 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build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,171 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,171 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Access.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,172 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/pubmed_120101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,172 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,173 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,173 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/isolat1.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,173 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,174 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,174 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/isotech.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,174 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,175 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 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build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,178 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,178 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,178 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,179 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,179 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/archivecustom-modules.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,180 root INFO copying 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build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,184 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,184 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,185 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,185 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,186 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/isocyr2.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,186 root INFO copying 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build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,188 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,189 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,189 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_all.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,189 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/mathml2.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,190 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,190 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,191 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,191 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NSE.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,191 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/pubmed_150101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,192 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,192 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,193 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,193 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,193 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,194 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,194 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,195 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,195 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/pubmed_130501.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,195 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/einfo.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,196 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/pubmed_250101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,196 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/format.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,196 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,197 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,197 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/pubmed_230101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,198 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,198 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,198 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,199 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/isomopf.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,199 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/isopub.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,199 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,200 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/xmlspecchars.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,200 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,201 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,201 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/pubmed_130101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,201 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,202 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,202 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,202 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/pubmed_100101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,203 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,203 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,204 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,204 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,204 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/JATS-references1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,205 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/OMSSA.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,205 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,205 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,206 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,206 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/JATS-format1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,207 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,207 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NSE.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,207 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,208 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,208 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,208 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,209 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/elink.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,209 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,210 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,210 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/DTDs 2026-10-10 03:37:50,210 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez 2026-10-10 03:37:50,211 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/Parser.py -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez 2026-10-10 03:37:50,211 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Entrez/XSDs 2026-10-10 03:37:50,212 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/XSDs 2026-10-10 03:37:50,212 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/XSDs 2026-10-10 03:37:50,212 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Entrez/XSDs/IPGReportSet.xsd -> build/bdist.linux-loongarch64/wheel/./Bio/Entrez/XSDs 2026-10-10 03:37:50,213 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/SVDSuperimposer 2026-10-10 03:37:50,213 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/SVDSuperimposer/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/SVDSuperimposer 2026-10-10 03:37:50,214 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Cluster 2026-10-10 03:37:50,214 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Cluster/cluster.c -> build/bdist.linux-loongarch64/wheel/./Bio/Cluster 2026-10-10 03:37:50,214 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Cluster/clustermodule.c -> build/bdist.linux-loongarch64/wheel/./Bio/Cluster 2026-10-10 03:37:50,215 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Cluster/_cluster.cpython-314-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/Cluster 2026-10-10 03:37:50,215 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Cluster/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Cluster 2026-10-10 03:37:50,216 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Cluster/cluster.h -> build/bdist.linux-loongarch64/wheel/./Bio/Cluster 2026-10-10 03:37:50,216 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Nexus 2026-10-10 03:37:50,217 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Nexus/cnexus.c -> build/bdist.linux-loongarch64/wheel/./Bio/Nexus 2026-10-10 03:37:50,217 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Nexus/Trees.py -> build/bdist.linux-loongarch64/wheel/./Bio/Nexus 2026-10-10 03:37:50,217 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Nexus/Nodes.py -> build/bdist.linux-loongarch64/wheel/./Bio/Nexus 2026-10-10 03:37:50,218 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Nexus/StandardData.py -> build/bdist.linux-loongarch64/wheel/./Bio/Nexus 2026-10-10 03:37:50,218 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Nexus/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Nexus 2026-10-10 03:37:50,218 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Nexus/Nexus.py -> build/bdist.linux-loongarch64/wheel/./Bio/Nexus 2026-10-10 03:37:50,219 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Nexus/cnexus.cpython-314-loongarch64-linux-musl.so -> build/bdist.linux-loongarch64/wheel/./Bio/Nexus 2026-10-10 03:37:50,219 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Seq.py -> build/bdist.linux-loongarch64/wheel/./Bio 2026-10-10 03:37:50,220 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Data 2026-10-10 03:37:50,220 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Data/IUPACData.py -> build/bdist.linux-loongarch64/wheel/./Bio/Data 2026-10-10 03:37:50,221 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Data/PDBData.py -> build/bdist.linux-loongarch64/wheel/./Bio/Data 2026-10-10 03:37:50,221 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Data/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Data 2026-10-10 03:37:50,221 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Data/CodonTable.py -> build/bdist.linux-loongarch64/wheel/./Bio/Data 2026-10-10 03:37:50,222 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/bgzf.py -> build/bdist.linux-loongarch64/wheel/./Bio 2026-10-10 03:37:50,222 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/KEGG 2026-10-10 03:37:50,223 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/KEGG/Compound 2026-10-10 03:37:50,223 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/KEGG/Compound/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG/Compound 2026-10-10 03:37:50,223 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/KEGG/Gene 2026-10-10 03:37:50,224 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/KEGG/Gene/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG/Gene 2026-10-10 03:37:50,224 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/KEGG/Map 2026-10-10 03:37:50,224 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/KEGG/Map/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG/Map 2026-10-10 03:37:50,225 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/KEGG/Enzyme 2026-10-10 03:37:50,225 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/KEGG/Enzyme/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG/Enzyme 2026-10-10 03:37:50,225 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/KEGG/REST.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG 2026-10-10 03:37:50,226 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/KEGG/KGML 2026-10-10 03:37:50,226 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/KEGG/KGML/KGML_pathway.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG/KGML 2026-10-10 03:37:50,226 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/KEGG/KGML/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG/KGML 2026-10-10 03:37:50,227 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/KEGG/KGML/KGML_parser.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG/KGML 2026-10-10 03:37:50,227 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/KEGG/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/KEGG 2026-10-10 03:37:50,228 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Graphics 2026-10-10 03:37:50,228 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Graphics/Comparative.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics 2026-10-10 03:37:50,228 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Graphics/GenomeDiagram 2026-10-10 03:37:50,229 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-10-10 03:37:50,229 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram/_Colors.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-10-10 03:37:50,229 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-10-10 03:37:50,230 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-10-10 03:37:50,230 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-10-10 03:37:50,231 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-10-10 03:37:50,231 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram/_Graph.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-10-10 03:37:50,231 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram/_Track.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-10-10 03:37:50,232 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-10-10 03:37:50,232 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram/_Diagram.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-10-10 03:37:50,232 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram/_Feature.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-10-10 03:37:50,233 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics/GenomeDiagram 2026-10-10 03:37:50,233 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Graphics/KGML_vis.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics 2026-10-10 03:37:50,233 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Graphics/BasicChromosome.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics 2026-10-10 03:37:50,234 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Graphics/DisplayRepresentation.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics 2026-10-10 03:37:50,234 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Graphics/ColorSpiral.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics 2026-10-10 03:37:50,235 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Graphics/Distribution.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics 2026-10-10 03:37:50,235 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Graphics/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Graphics 2026-10-10 03:37:50,235 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/Affy 2026-10-10 03:37:50,236 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Affy/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/Affy 2026-10-10 03:37:50,236 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/Affy/CelFile.py -> build/bdist.linux-loongarch64/wheel/./Bio/Affy 2026-10-10 03:37:50,236 root INFO creating build/bdist.linux-loongarch64/wheel/Bio/HMM 2026-10-10 03:37:50,237 root INFO copying build/lib.linux-loongarch64-cpython-314/Bio/HMM/__init__.py -> build/bdist.linux-loongarch64/wheel/./Bio/HMM 2026-10-10 03:37:50,237 root INFO creating build/bdist.linux-loongarch64/wheel/BioSQL 2026-10-10 03:37:50,238 root INFO copying build/lib.linux-loongarch64-cpython-314/BioSQL/py.typed -> build/bdist.linux-loongarch64/wheel/./BioSQL 2026-10-10 03:37:50,238 root INFO copying build/lib.linux-loongarch64-cpython-314/BioSQL/Loader.py -> build/bdist.linux-loongarch64/wheel/./BioSQL 2026-10-10 03:37:50,238 root INFO copying build/lib.linux-loongarch64-cpython-314/BioSQL/BioSeqDatabase.py -> build/bdist.linux-loongarch64/wheel/./BioSQL 2026-10-10 03:37:50,239 root INFO copying build/lib.linux-loongarch64-cpython-314/BioSQL/__init__.py -> build/bdist.linux-loongarch64/wheel/./BioSQL 2026-10-10 03:37:50,239 root INFO copying build/lib.linux-loongarch64-cpython-314/BioSQL/BioSeq.py -> 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Please use `pip install` or `python -m build` instead of `python setup.py` commands. For further information see https://packaging.python.org/en/latest/discussions/setup-py-deprecated/ DEPRECATION WARNING: Invoking setup.py is deprecated and will be removed in a future release of Biopython. Please use `pip install` or `python -m build` instead of `python setup.py` commands. For further information see https://packaging.python.org/en/latest/discussions/setup-py-deprecated/ 2026-10-10 03:37:50,616 gpep517 INFO The backend produced .dist/biopython-1.88-cp314-cp314-linux_loongarch64.whl biopython-1.88-cp314-cp314-linux_loongarch64.whl >>> py3-biopython: Entering fakeroot... >>> py3-biopython-pyc*: Running split function pyc... 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'/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/UniProt/__pycache__' 'usr/lib/python3.14/site-packages/Bio/SCOP/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SCOP/__pycache__' 'usr/lib/python3.14/site-packages/Bio/SearchIO/InfernalIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/InfernalIO/__pycache__' 'usr/lib/python3.14/site-packages/Bio/SearchIO/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/__pycache__' 'usr/lib/python3.14/site-packages/Bio/SearchIO/_model/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/SearchIO/_model/__pycache__' 'usr/lib/python3.14/site-packages/Bio/SearchIO/BlastIO/__pycache__' -> 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'usr/lib/python3.14/site-packages/Bio/codonalign/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/codonalign/__pycache__' 'usr/lib/python3.14/site-packages/Bio/Sequencing/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Sequencing/__pycache__' 'usr/lib/python3.14/site-packages/Bio/Pathway/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Pathway/__pycache__' 'usr/lib/python3.14/site-packages/Bio/Pathway/Rep/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Pathway/Rep/__pycache__' 'usr/lib/python3.14/site-packages/Bio/Compass/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Compass/__pycache__' 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'usr/lib/python3.14/site-packages/Bio/Graphics/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Graphics/__pycache__' 'usr/lib/python3.14/site-packages/Bio/Affy/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/Affy/__pycache__' 'usr/lib/python3.14/site-packages/Bio/HMM/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/Bio/HMM/__pycache__' 'usr/lib/python3.14/site-packages/BioSQL/__pycache__' -> '/home/buildozer/aports/community/py3-biopython/pkg/py3-biopython-pyc/usr/lib/python3.14/site-packages/BioSQL/__pycache__' >>> py3-biopython-pyc*: Preparing subpackage py3-biopython-pyc... >>> py3-biopython-pyc*: Running postcheck for py3-biopython-pyc >>> py3-biopython*: Running postcheck for py3-biopython >>> py3-biopython*: Preparing package py3-biopython... >>> py3-biopython*: Stripping binaries >>> py3-biopython*: Scanning shared objects >>> py3-biopython*: Tracing dependencies... py3-numpy python3 python3~3.14 so:libc.musl-loongarch64.so.1 >>> py3-biopython*: Package size: 11.4 MB >>> py3-biopython*: Compressing data... >>> py3-biopython*: Create checksum... >>> py3-biopython*: Create py3-biopython-1.88-r0.apk >>> py3-biopython-pyc*: Tracing dependencies... python3~3.14 >>> py3-biopython-pyc*: Package size: 6.2 MB >>> py3-biopython-pyc*: Compressing data... >>> py3-biopython-pyc*: Create checksum... >>> py3-biopython-pyc*: Create py3-biopython-pyc-1.88-r0.apk >>> py3-biopython: Build complete at Sat, 10 Oct 2026 03:37:54 +0000 elapsed time 0h 0m 31s >>> py3-biopython: Cleaning up srcdir >>> py3-biopython: Cleaning up pkgdir >>> py3-biopython: Cleaning up tmpdir >>> py3-biopython: Uninstalling dependencies... ( 1/31) Purging .makedepends-py3-biopython (20261010.033724) ( 2/31) Purging py3-gpep517-pyc (20-r0) ( 3/31) Purging py3-gpep517 (20-r0) ( 4/31) Purging py3-installer-pyc (1.0.1-r0) ( 5/31) Purging py3-installer (1.0.1-r0) ( 6/31) Purging py3-setuptools-pyc (84.0.0-r0) ( 7/31) Purging py3-setuptools (84.0.0-r0) ( 8/31) Purging py3-wheel-pyc (0.48.0-r0) ( 9/31) Purging py3-wheel (0.48.0-r0) (10/31) Purging py3-packaging-pyc (26.2-r0) (11/31) Purging py3-packaging (26.2-r0) (12/31) Purging py3-parsing-pyc (3.3.3-r0) (13/31) Purging py3-parsing (3.3.3-r0) (14/31) Purging py3-numpy-dev (2.5.3-r0) (15/31) Purging py3-numpy-tests (2.5.3-r0) (16/31) Purging py3-numpy-pyc (2.5.3-r0) (17/31) Purging py3-numpy (2.5.3-r0) (18/31) Purging openblas (0.3.30-r2) (19/31) Purging python3-dev (3.14.8-r0) (20/31) Purging python3-pyc (3.14.8-r0) (21/31) Purging python3-pycache-pyc0 (3.14.8-r0) (22/31) Purging pyc (3.14.8-r0) (23/31) Purging python3 (3.14.8-r0) (24/31) Purging libbz2 (1.0.8-r6) (25/31) Purging libffi (3.8.0-r0) (26/31) Purging libgfortran (15.2.0-r9) (27/31) Purging libpanelw (6.6_p20260822-r0) (28/31) Purging mpdecimal (4.0.1-r0) (29/31) Purging readline (8.3.3-r1) (30/31) Purging sqlite-libs (3.53.4-r0) (31/31) Purging xz-libs (5.8.4-r0) Executing busybox-1.38.0-r7.trigger OK: 270.6 MiB in 103 packages >>> py3-biopython: Updating the community/loongarch64 repository index... >>> py3-biopython: Signing the index...